RNA–Protein interactions for RNA: ENST00000401921.5

HDAC9-201, Transcript of histone deacetylase 9, humanhuman

TSL 1 (best) BASIC

Gene HDAC9, Length 3,254 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC9-201ENST00000401921 ATF7IPQ6VMQ6 1270 aa9.71□□□□□ -0.85
HDAC9-201ENST00000401921 RRS1Q15050 365 aaKnown RBP9.71□□□□□ -0.86
HDAC9-201ENST00000401921 DNAJC5Q9H3Z4 198 aa9.71□□□□□ -0.86
HDAC9-201ENST00000401921 APBB1O00213 710 aa9.71□□□□□ -0.86
HDAC9-201ENST00000401921 TMEM57Q8N5G2 664 aa9.71□□□□□ -0.86
HDAC9-201ENST00000401921 COG3Q96JB2 828 aa9.71□□□□□ -0.86
HDAC9-201ENST00000401921 C1orf115Q9H7X2 142 aa9.71□□□□□ -0.86
HDAC9-201ENST00000401921 EMILIN1Q9Y6C2 1016 aa9.71□□□□□ -0.86
HDAC9-201ENST00000401921 PPRC1Q5VV67 1664 aaKnown RBP9.7□□□□□ -0.86
HDAC9-201ENST00000401921 ZMYND15Q9H091 742 aa9.7□□□□□ -0.86
HDAC9-201ENST00000401921 YEATS2Q9ULM3 1422 aa9.7□□□□□ -0.86
HDAC9-201ENST00000401921 KIDINS220Q9ULH0 1771 aa9.7□□□□□ -0.86
HDAC9-201ENST00000401921 NINLQ9Y2I6 1382 aa9.7□□□□□ -0.86
HDAC9-201ENST00000401921 ANKRD45Q5TZF3 282 aa9.7□□□□□ -0.86
HDAC9-201ENST00000401921 NME9Q86XW9 330 aa9.7□□□□□ -0.86
HDAC9-201ENST00000401921 ZRANB1Q9UGI0 708 aa9.69□□□□□ -0.86
HDAC9-201ENST00000401921 CCDC27Q2M243 656 aa9.69□□□□□ -0.86
HDAC9-201ENST00000401921 RSPH6AQ9H0K4 717 aa9.69□□□□□ -0.86
HDAC9-201ENST00000401921 NCKAP5LQ9HCH0 1330 aa9.69□□□□□ -0.86
HDAC9-201ENST00000401921 C14orf37Q86TY3 774 aa9.69□□□□□ -0.86
HDAC9-201ENST00000401921 BRPF3Q9ULD4 1205 aa9.68□□□□□ -0.86
HDAC9-201ENST00000401921 MLH3Q9UHC1 1453 aa9.68□□□□□ -0.86
HDAC9-201ENST00000401921 NSD2O96028 1365 aa9.68□□□□□ -0.86
HDAC9-201ENST00000401921 HDGFP51858 240 aaKnown RBP9.68□□□□□ -0.86
HDAC9-201ENST00000401921 AAMPQ13685 434 aa9.68□□□□□ -0.86
HDAC9-201ENST00000401921 DCTN1Q14203 1278 aa9.68□□□□□ -0.86
HDAC9-201ENST00000401921 GZF1Q9H116 711 aaPredicted RBP9.68□□□□□ -0.86
HDAC9-201ENST00000401921 TRIM35Q9UPQ4 493 aa9.68□□□□□ -0.86
HDAC9-201ENST00000401921 KIF16BQ96L93 1317 aa9.68□□□□□ -0.86
HDAC9-201ENST00000401921 FCHSD2O94868 740 aa9.67□□□□□ -0.86
HDAC9-201ENST00000401921 DEPDC5O75140 1603 aa9.67□□□□□ -0.86
HDAC9-201ENST00000401921 CALD1Q05682 793 aaKnown RBP9.67□□□□□ -0.86
HDAC9-201ENST00000401921 MROH2AA6NES4 1674 aa9.67□□□□□ -0.86
HDAC9-201ENST00000401921 ZBTB7CA1YPR0 619 aa9.67□□□□□ -0.86
HDAC9-201ENST00000401921 PUS7Q96PZ0 661 aaKnown RBP9.67□□□□□ -0.86
HDAC9-201ENST00000401921 C22orf23Q9BZE7 217 aa9.67□□□□□ -0.86
HDAC9-201ENST00000401921 POLKQ9UBT6 870 aa9.67□□□□□ -0.86
HDAC9-201ENST00000401921 HSCBQ8IWL3 235 aa9.66□□□□□ -0.86
HDAC9-201ENST00000401921 VWDEQ8N2E2 1590 aa9.66□□□□□ -0.86
HDAC9-201ENST00000401921 PHACTR3Q96KR7 559 aa9.66□□□□□ -0.86
HDAC9-201ENST00000401921 ABCC3O15438 1527 aa9.66□□□□□ -0.86
HDAC9-201ENST00000401921 YTHDC2Q9H6S0 1430 aaKnown RBP9.66□□□□□ -0.86
HDAC9-201ENST00000401921 NUDT16Q96DE0 195 aaKnown RBP9.66□□□□□ -0.86
HDAC9-201ENST00000401921 FOXD4L1Q9NU39 408 aa9.66□□□□□ -0.86
HDAC9-201ENST00000401921 ADGRB3O60242 1522 aa9.66□□□□□ -0.86
HDAC9-201ENST00000401921 MROH1Q8NDA8 1641 aa9.66□□□□□ -0.86
HDAC9-201ENST00000401921 CT47B1P0C2W7 299 aaPredicted RBP9.65□□□□□ -0.86
HDAC9-201ENST00000401921 GNAI1P63096 354 aa9.65□□□□□ -0.86
HDAC9-201ENST00000401921 MYOM1P52179 1685 aa9.65□□□□□ -0.86
HDAC9-201ENST00000401921 FAM83GA6ND36 823 aa9.65□□□□□ -0.86
HDAC9-201ENST00000401921 HECW2Q9P2P5 1572 aa9.65□□□□□ -0.86
HDAC9-201ENST00000401921 TWISTNBQ3B726 338 aaPredicted RBP9.65□□□□□ -0.87
HDAC9-201ENST00000401921 QRICH2Q9H0J4 1663 aa9.65□□□□□ -0.87
HDAC9-201ENST00000401921 HSP90AB1P08238 724 aaKnown RBP9.64□□□□□ -0.87
HDAC9-201ENST00000401921 NFE2L2Q16236 605 aa9.64□□□□□ -0.87
HDAC9-201ENST00000401921 ABCC11Q96J66 1382 aa9.64□□□□□ -0.87
HDAC9-201ENST00000401921 KIAA1210Q9ULL0 1709 aa9.64□□□□□ -0.87
HDAC9-201ENST00000401921 WASLO00401 505 aaPredicted RBP9.64□□□□□ -0.87
HDAC9-201ENST00000401921 SULT6B1Q6IMI4 303 aa9.64□□□□□ -0.87
HDAC9-201ENST00000401921 TSPYL6Q8N831 410 aa9.64□□□□□ -0.87
HDAC9-201ENST00000401921 PLEKHF1Q96S99 279 aa9.64□□□□□ -0.87
HDAC9-201ENST00000401921 CHMP4BQ9H444 224 aaKnown RBP9.64□□□□□ -0.87
HDAC9-201ENST00000401921 CCDC61Q9Y6R9 512 aa9.64□□□□□ -0.87
HDAC9-201ENST00000401921 SLC4A10Q6U841 1118 aa9.64□□□□□ -0.87
HDAC9-201ENST00000401921 SLC26A8Q96RN1 970 aa9.64□□□□□ -0.87
HDAC9-201ENST00000401921 LMOD3Q0VAK6 560 aa9.63□□□□□ -0.87
HDAC9-201ENST00000401921 ABCF1Q8NE71 845 aaKnown RBP eCLIP9.63□□□□□ -0.87
HDAC9-201ENST00000401921 NGDNQ8NEJ9 315 aaKnown RBP9.63□□□□□ -0.87
HDAC9-201ENST00000401921 GLI2P10070 1586 aa9.62□□□□□ -0.87
HDAC9-201ENST00000401921 TBC1D2Q9BYX2 928 aa9.62□□□□□ -0.87
HDAC9-201ENST00000401921 LMTK2Q8IWU2 1503 aa9.62□□□□□ -0.87
HDAC9-201ENST00000401921 RTF1Q92541 710 aaKnown RBP9.62□□□□□ -0.87
HDAC9-201ENST00000401921 LTV1Q96GA3 475 aaPredicted RBP9.62□□□□□ -0.87
HDAC9-201ENST00000401921 NEO1Q92859 1461 aa9.62□□□□□ -0.87
HDAC9-201ENST00000401921 NRXN1Q9ULB1 1477 aa9.61□□□□□ -0.87
HDAC9-201ENST00000401921 A0A0U1RQG5 324 aaPredicted RBP9.61□□□□□ -0.87
HDAC9-201ENST00000401921 NUTM2GQ5VZR2 741 aa9.61□□□□□ -0.87
HDAC9-201ENST00000401921 TBC1D32Q96NH3 1257 aa9.61□□□□□ -0.87
HDAC9-201ENST00000401921 TULP4Q9NRJ4 1543 aa9.61□□□□□ -0.87
HDAC9-201ENST00000401921 CHD1LQ86WJ1 897 aa9.61□□□□□ -0.87
HDAC9-201ENST00000401921 NECTIN2Q92692 538 aa9.61□□□□□ -0.87
HDAC9-201ENST00000401921 MBIPQ9NS73 344 aa9.61□□□□□ -0.87
HDAC9-201ENST00000401921 ADGRB1O14514 1584 aa9.61□□□□□ -0.87
HDAC9-201ENST00000401921 SETBP1Q9Y6X0 1596 aa9.61□□□□□ -0.87
HDAC9-201ENST00000401921 AMPHP49418 695 aa9.6□□□□□ -0.87
HDAC9-201ENST00000401921 MCM10Q7L590 875 aa9.6□□□□□ -0.87
HDAC9-201ENST00000401921 MIS18AQ9NYP9 233 aa9.6□□□□□ -0.87
HDAC9-201ENST00000401921 IL16Q14005 1332 aa9.6□□□□□ -0.87
HDAC9-201ENST00000401921 CEBPAP49715 358 aaPredicted RBP9.6□□□□□ -0.87
HDAC9-201ENST00000401921 ZBTB40Q9NUA8 1239 aa9.6□□□□□ -0.87
HDAC9-201ENST00000401921 ALDH1L2Q3SY69 923 aa9.6□□□□□ -0.87
HDAC9-201ENST00000401921 AEBP1Q8IUX7 1158 aa9.6□□□□□ -0.87
HDAC9-201ENST00000401921 C8orf58Q8NAV2 365 aa9.6□□□□□ -0.87
HDAC9-201ENST00000401921 API5Q9BZZ5 524 aaKnown RBP9.6□□□□□ -0.87
HDAC9-201ENST00000401921 CFAP74Q9C0B2 1584 aa9.6□□□□□ -0.87
HDAC9-201ENST00000401921 RIMS2Q9UQ26 1411 aa9.6□□□□□ -0.87
HDAC9-201ENST00000401921 USP19O94966 1318 aa9.59□□□□□ -0.87
HDAC9-201ENST00000401921 FRMPD1Q5SYB0 1578 aa9.59□□□□□ -0.87
HDAC9-201ENST00000401921 VAMP4O75379 141 aa9.59□□□□□ -0.87
HDAC9-201ENST00000401921 KRT24Q2M2I5 525 aa9.59□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms