RNA–Protein interactions for RNA: ENST00000400946.2

LINC01139-201, Transcript of long intergenic non-protein coding RNA 1139, humanhuman

TSL 1 (best) BASIC

Gene LINC01139, Length 1,537 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01139-201ENST00000400946 ADGRB2O60241 1585 aa11.31□□□□□ -0.6
LINC01139-201ENST00000400946 VIRMAQ69YN4 1812 aaKnown RBP11.31□□□□□ -0.6
LINC01139-201ENST00000400946 C20orf194Q5TEA3 1177 aa11.3□□□□□ -0.6
LINC01139-201ENST00000400946 CLEC11AQ9Y240 323 aa11.3□□□□□ -0.6
LINC01139-201ENST00000400946 MAPK8IP3Q9UPT6 1336 aa11.3□□□□□ -0.6
LINC01139-201ENST00000400946 ATAD2Q6PL18 1390 aa11.3□□□□□ -0.6
LINC01139-201ENST00000400946 PREX1Q8TCU6 1659 aa11.3□□□□□ -0.6
LINC01139-201ENST00000400946 TMEM131LA2VDJ0 1609 aa11.3□□□□□ -0.6
LINC01139-201ENST00000400946 GGT6Q6P531 493 aa11.3□□□□□ -0.6
LINC01139-201ENST00000400946 TRAK1Q9UPV9 953 aa11.3□□□□□ -0.6
LINC01139-201ENST00000400946 ABCC11Q96J66 1382 aa11.29□□□□□ -0.6
LINC01139-201ENST00000400946 PRKAR2AP13861 404 aaKnown RBP11.29□□□□□ -0.6
LINC01139-201ENST00000400946 CCDC146Q8IYE0 955 aa11.29□□□□□ -0.6
LINC01139-201ENST00000400946 CHGAP10645 457 aaKnown RBP11.28□□□□□ -0.6
LINC01139-201ENST00000400946 SLC12A5Q9H2X9 1139 aa11.28□□□□□ -0.6
LINC01139-201ENST00000400946 MYH16Q9H6N6 1097 aa11.28□□□□□ -0.6
LINC01139-201ENST00000400946 DEKP35659 375 aaKnown RBP11.27□□□□□ -0.61
LINC01139-201ENST00000400946 PMFBP1Q8TBY8 1022 aa11.27□□□□□ -0.61
LINC01139-201ENST00000400946 PNNQ9H307 717 aaKnown RBP11.27□□□□□ -0.61
LINC01139-201ENST00000400946 IL16Q14005 1332 aa11.26□□□□□ -0.61
LINC01139-201ENST00000400946 CLUAP1Q96AJ1 413 aa11.26□□□□□ -0.61
LINC01139-201ENST00000400946 DLC1Q96QB1 1528 aa11.26□□□□□ -0.61
LINC01139-201ENST00000400946 CFAP65Q6ZU64 1925 aaKnown RBP11.26□□□□□ -0.61
LINC01139-201ENST00000400946 C19orf67A6NJJ6 358 aa11.25□□□□□ -0.61
LINC01139-201ENST00000400946 CEBPAP49715 358 aaPredicted RBP11.25□□□□□ -0.61
LINC01139-201ENST00000400946 MTHFSP49914 203 aa11.25□□□□□ -0.61
LINC01139-201ENST00000400946 TCP11L2Q8N4U5 519 aa11.25□□□□□ -0.61
LINC01139-201ENST00000400946 ZNF692Q9BU19 519 aaPredicted RBP11.25□□□□□ -0.61
LINC01139-201ENST00000400946 TERF2IPQ9NYB0 399 aa11.25□□□□□ -0.61
LINC01139-201ENST00000400946 C8orf34Q49A92 452 aa11.25□□□□□ -0.61
LINC01139-201ENST00000400946 BCL11AQ9H165 835 aa11.25□□□□□ -0.61
LINC01139-201ENST00000400946 LMTK3Q96Q04 1460 aa11.24□□□□□ -0.61
LINC01139-201ENST00000400946 RARSP54136 660 aaKnown RBP11.24□□□□□ -0.61
LINC01139-201ENST00000400946 MKRN4PQ13434 485 aaPredicted RBP11.24□□□□□ -0.61
LINC01139-201ENST00000400946 IDI1Q13907 227 aa11.24□□□□□ -0.61
LINC01139-201ENST00000400946 ESF1Q9H501 851 aaKnown RBP11.24□□□□□ -0.61
LINC01139-201ENST00000400946 CDC42BPGQ6DT37 1551 aa11.24□□□□□ -0.61
LINC01139-201ENST00000400946 C3P01024 1663 aa11.23□□□□□ -0.61
LINC01139-201ENST00000400946 BCAR3O75815 825 aa11.23□□□□□ -0.61
LINC01139-201ENST00000400946 TMEM132EQ6IEE7 984 aa11.23□□□□□ -0.61
LINC01139-201ENST00000400946 NPM2Q86SE8 214 aaKnown RBP11.23□□□□□ -0.61
LINC01139-201ENST00000400946 SSUH2Q9Y2M2 353 aa11.23□□□□□ -0.61
LINC01139-201ENST00000400946 COL3A1P02461 1466 aaPredicted RBP11.22□□□□□ -0.61
LINC01139-201ENST00000400946 YTHDC2Q9H6S0 1430 aaKnown RBP11.22□□□□□ -0.61
LINC01139-201ENST00000400946 PNPLA6Q8IY17 1366 aa11.22□□□□□ -0.61
LINC01139-201ENST00000400946 CANXP27824 592 aaKnown RBP11.21□□□□□ -0.61
LINC01139-201ENST00000400946 ZNF428Q96B54 188 aa11.21□□□□□ -0.61
LINC01139-201ENST00000400946 ATP7BP35670 1465 aa11.21□□□□□ -0.62
LINC01139-201ENST00000400946 MYO5BQ9ULV0 1848 aa11.21□□□□□ -0.62
LINC01139-201ENST00000400946 ALKQ9UM73 1620 aa11.2□□□□□ -0.62
LINC01139-201ENST00000400946 NBR1Q14596 966 aa11.2□□□□□ -0.62
LINC01139-201ENST00000400946 KIF20BQ96Q89 1820 aa11.2□□□□□ -0.62
LINC01139-201ENST00000400946 A0A1W2PP64 1363 aa11.2□□□□□ -0.62
LINC01139-201ENST00000400946 NLRP1Q9C000 1473 aa11.2□□□□□ -0.62
LINC01139-201ENST00000400946 RWDD1Q9H446 243 aaPredicted RBP11.19□□□□□ -0.62
LINC01139-201ENST00000400946 SPATA31D1Q6ZQQ2 1576 aa11.19□□□□□ -0.62
LINC01139-201ENST00000400946 SETD1BQ9UPS6 1966 aaKnown RBP11.19□□□□□ -0.62
LINC01139-201ENST00000400946 HDGFL2Q7Z4V5 671 aaPredicted RBP11.19□□□□□ -0.62
LINC01139-201ENST00000400946 CD163L1Q9NR16 1453 aa11.18□□□□□ -0.62
LINC01139-201ENST00000400946 U2AF1L5P0DN76 240 aaPredicted RBP11.18□□□□□ -0.62
LINC01139-201ENST00000400946 U2AF1Q01081 240 aaKnown RBP eCLIP11.18□□□□□ -0.62
LINC01139-201ENST00000400946 ZKSCAN2Q63HK3 967 aa11.18□□□□□ -0.62
LINC01139-201ENST00000400946 SIRT1Q96EB6 747 aa11.18□□□□□ -0.62
LINC01139-201ENST00000400946 PLEKHF1Q96S99 279 aa11.18□□□□□ -0.62
LINC01139-201ENST00000400946 TULP1O00294 542 aaPredicted RBP11.17□□□□□ -0.62
LINC01139-201ENST00000400946 IGHDP01880 384 aa11.17□□□□□ -0.62
LINC01139-201ENST00000400946 NEFMP07197 916 aa11.17□□□□□ -0.62
LINC01139-201ENST00000400946 HSPA2P54652 639 aa11.17□□□□□ -0.62
LINC01139-201ENST00000400946 BRPF1P55201 1214 aaPredicted RBP11.17□□□□□ -0.62
LINC01139-201ENST00000400946 PPIP5K1Q6PFW1 1433 aa11.17□□□□□ -0.62
LINC01139-201ENST00000400946 EIF5BO60841 1220 aaKnown RBP11.16□□□□□ -0.62
LINC01139-201ENST00000400946 TMPOP42166 694 aaKnown RBP11.16□□□□□ -0.62
LINC01139-201ENST00000400946 SRPK2P78362 688 aaKnown RBP11.16□□□□□ -0.62
LINC01139-201ENST00000400946 MVPQ14764 893 aaKnown RBP11.16□□□□□ -0.62
LINC01139-201ENST00000400946 CHMP4BQ9H444 224 aaKnown RBP11.16□□□□□ -0.62
LINC01139-201ENST00000400946 CABP2Q9NPB3 220 aa11.16□□□□□ -0.62
LINC01139-201ENST00000400946 COG6Q9Y2V7 657 aa11.16□□□□□ -0.62
LINC01139-201ENST00000400946 SETD1AO15047 1707 aaKnown RBP11.16□□□□□ -0.62
LINC01139-201ENST00000400946 FYB1O15117 783 aa11.15□□□□□ -0.62
LINC01139-201ENST00000400946 FCHSD2O94868 740 aa11.15□□□□□ -0.62
LINC01139-201ENST00000400946 CALD1Q05682 793 aaKnown RBP11.15□□□□□ -0.62
LINC01139-201ENST00000400946 BECN1Q14457 450 aa11.15□□□□□ -0.62
LINC01139-201ENST00000400946 ALDH1L2Q3SY69 923 aa11.15□□□□□ -0.62
LINC01139-201ENST00000400946 PANK1Q8TE04 598 aa11.15□□□□□ -0.62
LINC01139-201ENST00000400946 POGKQ9P215 609 aa11.15□□□□□ -0.62
LINC01139-201ENST00000400946 KNDC1Q76NI1 1749 aa11.15□□□□□ -0.62
LINC01139-201ENST00000400946 IPO8O15397 1037 aaKnown RBP11.14□□□□□ -0.63
LINC01139-201ENST00000400946 DIAPH1O60610 1272 aaKnown RBP11.14□□□□□ -0.63
LINC01139-201ENST00000400946 RGS3P49796 1198 aa11.14□□□□□ -0.63
LINC01139-201ENST00000400946 HDAC1Q13547 482 aaPredicted RBP11.14□□□□□ -0.63
LINC01139-201ENST00000400946 HOMEZQ8IX15 550 aa11.14□□□□□ -0.63
LINC01139-201ENST00000400946 DZIP1LQ8IYY4 767 aaKnown RBP11.14□□□□□ -0.63
LINC01139-201ENST00000400946 UPF2Q9HAU5 1272 aaKnown RBP11.14□□□□□ -0.63
LINC01139-201ENST00000400946 DDX19BQ9UMR2 479 aa11.14□□□□□ -0.63
LINC01139-201ENST00000400946 KIF16BQ96L93 1317 aa11.14□□□□□ -0.63
LINC01139-201ENST00000400946 A2ML1A8K2U0 1454 aa11.14□□□□□ -0.63
LINC01139-201ENST00000400946 PRAM1Q96QH2 718 aa11.14□□□□□ -0.63
LINC01139-201ENST00000400946 TAOK2Q9UL54 1235 aa11.14□□□□□ -0.63
LINC01139-201ENST00000400946 POTEMA6NI47 508 aa11.13□□□□□ -0.63
LINC01139-201ENST00000400946 TNNT2P45379 298 aaPredicted RBP11.13□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms