RNA–Protein interactions for RNA: ENST00000395667.7

CDRT1-203, CMT1A duplicated region transcript 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CDRT1, Length 3,016 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDRT1-203ENST00000395667 ADGRB2O60241 1585 aa11.84□□□□□ -0.51
CDRT1-203ENST00000395667 EXOSC9Q06265 439 aaKnown RBP11.84□□□□□ -0.51
CDRT1-203ENST00000395667 WAPLQ7Z5K2 1190 aa11.84□□□□□ -0.51
CDRT1-203ENST00000395667 SMC4Q9NTJ3 1288 aa11.84□□□□□ -0.51
CDRT1-203ENST00000395667 PCDHB15Q9Y5E8 787 aa11.84□□□□□ -0.51
CDRT1-203ENST00000395667 CD163L1Q9NR16 1453 aa11.83□□□□□ -0.52
CDRT1-203ENST00000395667 CT47B1P0C2W7 299 aaPredicted RBP11.83□□□□□ -0.52
CDRT1-203ENST00000395667 RIPK4P57078 832 aa11.83□□□□□ -0.52
CDRT1-203ENST00000395667 PNNQ9H307 717 aaKnown RBP11.83□□□□□ -0.52
CDRT1-203ENST00000395667 USP35Q9P2H5 1018 aa11.82□□□□□ -0.52
CDRT1-203ENST00000395667 PPP6R1Q9UPN7 881 aa11.82□□□□□ -0.52
CDRT1-203ENST00000395667 TRIM35Q9UPQ4 493 aa11.82□□□□□ -0.52
CDRT1-203ENST00000395667 CLTCQ00610 1675 aaKnown RBP11.82□□□□□ -0.52
CDRT1-203ENST00000395667 MED14O60244 1454 aa11.82□□□□□ -0.52
CDRT1-203ENST00000395667 DZIP1LQ8IYY4 767 aaKnown RBP11.82□□□□□ -0.52
CDRT1-203ENST00000395667 RWDD1Q9H446 243 aaPredicted RBP11.82□□□□□ -0.52
CDRT1-203ENST00000395667 COL3A1P02461 1466 aaPredicted RBP11.82□□□□□ -0.52
CDRT1-203ENST00000395667 MVPQ14764 893 aaKnown RBP11.81□□□□□ -0.52
CDRT1-203ENST00000395667 ARHGEF40Q8TER5 1519 aa11.81□□□□□ -0.52
CDRT1-203ENST00000395667 NLRP1Q9C000 1473 aa11.81□□□□□ -0.52
CDRT1-203ENST00000395667 RIMS2Q9UQ26 1411 aa11.81□□□□□ -0.52
CDRT1-203ENST00000395667 ANKRD26Q9UPS8 1709 aa11.81□□□□□ -0.52
CDRT1-203ENST00000395667 ESF1Q9H501 851 aaKnown RBP11.8□□□□□ -0.52
CDRT1-203ENST00000395667 DIP2BQ9P265 1576 aa11.8□□□□□ -0.52
CDRT1-203ENST00000395667 PDZRN3Q9UPQ7 1066 aa11.8□□□□□ -0.52
CDRT1-203ENST00000395667 A2ML1A8K2U0 1454 aa11.79□□□□□ -0.52
CDRT1-203ENST00000395667 FBLN1P23142 703 aa11.79□□□□□ -0.52
CDRT1-203ENST00000395667 SSH1Q8WYL5 1049 aa11.79□□□□□ -0.52
CDRT1-203ENST00000395667 IL16Q14005 1332 aa11.79□□□□□ -0.52
CDRT1-203ENST00000395667 ITPRIPQ8IWB1 547 aa11.78□□□□□ -0.52
CDRT1-203ENST00000395667 FCHSD2O94868 740 aa11.78□□□□□ -0.52
CDRT1-203ENST00000395667 TRIM27P14373 513 aa11.78□□□□□ -0.52
CDRT1-203ENST00000395667 AGLP35573 1532 aa11.78□□□□□ -0.52
CDRT1-203ENST00000395667 PNPLA6Q8IY17 1366 aa11.78□□□□□ -0.52
CDRT1-203ENST00000395667 PRKAR2BP31323 418 aa11.78□□□□□ -0.52
CDRT1-203ENST00000395667 KIF20BQ96Q89 1820 aa11.78□□□□□ -0.52
CDRT1-203ENST00000395667 POLKQ9UBT6 870 aa11.77□□□□□ -0.52
CDRT1-203ENST00000395667 SEC24BO95487 1268 aa11.77□□□□□ -0.53
CDRT1-203ENST00000395667 ATF7IPQ6VMQ6 1270 aa11.77□□□□□ -0.53
CDRT1-203ENST00000395667 NOB1Q9ULX3 412 aaKnown RBP11.77□□□□□ -0.53
CDRT1-203ENST00000395667 DDX19BQ9UMR2 479 aa11.77□□□□□ -0.53
CDRT1-203ENST00000395667 UPF2Q9HAU5 1272 aaKnown RBP11.76□□□□□ -0.53
CDRT1-203ENST00000395667 RIMBP3CA6NJZ7 1639 aa11.76□□□□□ -0.53
CDRT1-203ENST00000395667 RIMBP3BA6NNM3 1639 aa11.76□□□□□ -0.53
CDRT1-203ENST00000395667 RIMBP3Q9UFD9 1639 aa11.76□□□□□ -0.53
CDRT1-203ENST00000395667 DLC1Q96QB1 1528 aa11.76□□□□□ -0.53
CDRT1-203ENST00000395667 REREQ9P2R6 1566 aa11.76□□□□□ -0.53
CDRT1-203ENST00000395667 VIRMAQ69YN4 1812 aaKnown RBP11.76□□□□□ -0.53
CDRT1-203ENST00000395667 ATP7BP35670 1465 aa11.76□□□□□ -0.53
CDRT1-203ENST00000395667 HMOX1P09601 288 aa11.76□□□□□ -0.53
CDRT1-203ENST00000395667 TXNDC2Q86VQ3 553 aa11.76□□□□□ -0.53
CDRT1-203ENST00000395667 ABCF1Q8NE71 845 aaKnown RBP eCLIP11.76□□□□□ -0.53
CDRT1-203ENST00000395667 SPATA31D1Q6ZQQ2 1576 aa11.76□□□□□ -0.53
CDRT1-203ENST00000395667 WASLO00401 505 aaPredicted RBP11.76□□□□□ -0.53
CDRT1-203ENST00000395667 IPO8O15397 1037 aaKnown RBP11.76□□□□□ -0.53
CDRT1-203ENST00000395667 NFKBIBQ15653 356 aa11.76□□□□□ -0.53
CDRT1-203ENST00000395667 RSPH6AQ9H0K4 717 aa11.75□□□□□ -0.53
CDRT1-203ENST00000395667 USP19O94966 1318 aa11.75□□□□□ -0.53
CDRT1-203ENST00000395667 KIF16BQ96L93 1317 aa11.75□□□□□ -0.53
CDRT1-203ENST00000395667 NME9Q86XW9 330 aa11.75□□□□□ -0.53
CDRT1-203ENST00000395667 EMILIN1Q9Y6C2 1016 aa11.75□□□□□ -0.53
CDRT1-203ENST00000395667 PPIP5K1Q6PFW1 1433 aa11.74□□□□□ -0.53
CDRT1-203ENST00000395667 LRRC7Q96NW7 1537 aa11.74□□□□□ -0.53
CDRT1-203ENST00000395667 BECN1Q14457 450 aa11.73□□□□□ -0.53
CDRT1-203ENST00000395667 TMEM57Q8N5G2 664 aa11.73□□□□□ -0.53
CDRT1-203ENST00000395667 METP08581 1390 aa11.73□□□□□ -0.53
CDRT1-203ENST00000395667 HDGFP51858 240 aaKnown RBP11.73□□□□□ -0.53
CDRT1-203ENST00000395667 NUDT16Q96DE0 195 aaKnown RBP11.73□□□□□ -0.53
CDRT1-203ENST00000395667 NFE2L2Q16236 605 aa11.73□□□□□ -0.53
CDRT1-203ENST00000395667 COG3Q96JB2 828 aa11.73□□□□□ -0.53
CDRT1-203ENST00000395667 PHACTR3Q96KR7 559 aa11.73□□□□□ -0.53
CDRT1-203ENST00000395667 MAP2P11137 1827 aaKnown RBP11.73□□□□□ -0.53
CDRT1-203ENST00000395667 FAM135BQ49AJ0 1406 aa11.72□□□□□ -0.53
CDRT1-203ENST00000395667 EDC4Q6P2E9 1401 aaKnown RBP11.72□□□□□ -0.53
CDRT1-203ENST00000395667 ZRANB1Q9UGI0 708 aa11.72□□□□□ -0.53
CDRT1-203ENST00000395667 CALD1Q05682 793 aaKnown RBP11.72□□□□□ -0.53
CDRT1-203ENST00000395667 ALDH1L2Q3SY69 923 aa11.72□□□□□ -0.53
CDRT1-203ENST00000395667 THUMPD2Q9BTF0 503 aaKnown RBP11.72□□□□□ -0.53
CDRT1-203ENST00000395667 CCDC61Q9Y6R9 512 aa11.72□□□□□ -0.53
CDRT1-203ENST00000395667 NCKAP5LQ9HCH0 1330 aa11.72□□□□□ -0.53
CDRT1-203ENST00000395667 ZMYM3Q14202 1370 aa11.72□□□□□ -0.53
CDRT1-203ENST00000395667 HDAC1Q13547 482 aaPredicted RBP11.71□□□□□ -0.53
CDRT1-203ENST00000395667 SETD1AO15047 1707 aaKnown RBP11.71□□□□□ -0.53
CDRT1-203ENST00000395667 CDC42BPGQ6DT37 1551 aa11.71□□□□□ -0.54
CDRT1-203ENST00000395667 CPSF1Q10570 1443 aaKnown RBP11.71□□□□□ -0.54
CDRT1-203ENST00000395667 IL13P35225 146 aa11.7□□□□□ -0.54
CDRT1-203ENST00000395667 RRS1Q15050 365 aaKnown RBP11.7□□□□□ -0.54
CDRT1-203ENST00000395667 ZNF428Q96B54 188 aa11.7□□□□□ -0.54
CDRT1-203ENST00000395667 GNAI1P63096 354 aa11.69□□□□□ -0.54
CDRT1-203ENST00000395667 ZBTB40Q9NUA8 1239 aa11.69□□□□□ -0.54
CDRT1-203ENST00000395667 ELL2O00472 640 aaPredicted RBP11.69□□□□□ -0.54
CDRT1-203ENST00000395667 NRXN3Q9Y4C0 1643 aa11.68□□□□□ -0.54
CDRT1-203ENST00000395667 TBC1D32Q96NH3 1257 aa11.68□□□□□ -0.54
CDRT1-203ENST00000395667 FRAT2O75474 233 aaPredicted RBP11.68□□□□□ -0.54
CDRT1-203ENST00000395667 TNRQ92752 1358 aa11.68□□□□□ -0.54
CDRT1-203ENST00000395667 CDK12Q9NYV4 1490 aaPredicted RBP11.68□□□□□ -0.54
CDRT1-203ENST00000395667 LMOD3Q0VAK6 560 aa11.68□□□□□ -0.54
CDRT1-203ENST00000395667 SMC5Q8IY18 1101 aa11.68□□□□□ -0.54
CDRT1-203ENST00000395667 SLKQ9H2G2 1235 aaPredicted RBP11.68□□□□□ -0.54
CDRT1-203ENST00000395667 IFT57Q9NWB7 429 aa11.68□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms