RNA–Protein interactions for RNA: ENST00000394299.6

GPC3-202, Transcript of glypican 3, humanhuman

TSL 1 (best) BASIC

Gene GPC3, Length 2,379 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPC3-202ENST00000394299 CPSF1Q10570 1443 aaKnown RBP19.68■□□□□ 0.74
GPC3-202ENST00000394299 DIAPH1O60610 1272 aaKnown RBP19.68■□□□□ 0.74
GPC3-202ENST00000394299 SKAP1Q86WV1 359 aa19.68■□□□□ 0.74
GPC3-202ENST00000394299 AMOTL2Q9Y2J4 779 aa19.68■□□□□ 0.74
GPC3-202ENST00000394299 EMILIN1Q9Y6C2 1016 aa19.68■□□□□ 0.74
GPC3-202ENST00000394299 MED14O60244 1454 aa19.68■□□□□ 0.74
GPC3-202ENST00000394299 COL3A1P02461 1466 aaPredicted RBP19.68■□□□□ 0.74
GPC3-202ENST00000394299 ATP7BP35670 1465 aa19.68■□□□□ 0.74
GPC3-202ENST00000394299 CPS1P31327 1500 aa19.65■□□□□ 0.74
GPC3-202ENST00000394299 RRS1Q15050 365 aaKnown RBP19.64■□□□□ 0.74
GPC3-202ENST00000394299 THEMISQ8N1K5 641 aaPredicted RBP19.64■□□□□ 0.74
GPC3-202ENST00000394299 PNPLA6Q8IY17 1366 aa19.64■□□□□ 0.73
GPC3-202ENST00000394299 TMPOP42166 694 aaKnown RBP19.64■□□□□ 0.73
GPC3-202ENST00000394299 WDR63Q8IWG1 891 aa19.64■□□□□ 0.73
GPC3-202ENST00000394299 FER1L4A9Z1Z3 1794 aa19.63■□□□□ 0.73
GPC3-202ENST00000394299 SIPA1L2Q9P2F8 1722 aaPredicted RBP19.63■□□□□ 0.73
GPC3-202ENST00000394299 EDC4Q6P2E9 1401 aaKnown RBP19.63■□□□□ 0.73
GPC3-202ENST00000394299 ANKRD26Q9UPS8 1709 aa19.63■□□□□ 0.73
GPC3-202ENST00000394299 CCDC27Q2M243 656 aa19.62■□□□□ 0.73
GPC3-202ENST00000394299 GOLGA6L2Q8N9W4 650 aaPredicted RBP19.62■□□□□ 0.73
GPC3-202ENST00000394299 TRIM35Q9UPQ4 493 aa19.62■□□□□ 0.73
GPC3-202ENST00000394299 KIF20BQ96Q89 1820 aa19.62■□□□□ 0.73
GPC3-202ENST00000394299 KNDC1Q76NI1 1749 aa19.62■□□□□ 0.73
GPC3-202ENST00000394299 HMOX1P09601 288 aa19.62■□□□□ 0.73
GPC3-202ENST00000394299 TSR2Q969E8 191 aaKnown RBP19.62■□□□□ 0.73
GPC3-202ENST00000394299 BCL2L13Q9BXK5 485 aa19.62■□□□□ 0.73
GPC3-202ENST00000394299 TBX22Q9Y458 520 aa19.61■□□□□ 0.73
GPC3-202ENST00000394299 ACEP12821 1306 aa19.61■□□□□ 0.73
GPC3-202ENST00000394299 COG3Q96JB2 828 aa19.61■□□□□ 0.73
GPC3-202ENST00000394299 MAPK8IP3Q9UPT6 1336 aa19.6■□□□□ 0.73
GPC3-202ENST00000394299 PMFBP1Q8TBY8 1022 aa19.6■□□□□ 0.73
GPC3-202ENST00000394299 ARHGAP23Q9P227 1491 aa19.6■□□□□ 0.73
GPC3-202ENST00000394299 RIPK4P57078 832 aa19.59■□□□□ 0.73
GPC3-202ENST00000394299 FRAT1Q92837 279 aaPredicted RBP19.59■□□□□ 0.73
GPC3-202ENST00000394299 TNNQ9UQP3 1299 aa19.59■□□□□ 0.73
GPC3-202ENST00000394299 RARSP54136 660 aaKnown RBP19.58■□□□□ 0.73
GPC3-202ENST00000394299 SLIT1O75093 1534 aa19.58■□□□□ 0.73
GPC3-202ENST00000394299 PRKAR2BP31323 418 aa19.58■□□□□ 0.72
GPC3-202ENST00000394299 PANK1Q8TE04 598 aa19.58■□□□□ 0.72
GPC3-202ENST00000394299 ZNF692Q9BU19 519 aaPredicted RBP19.58■□□□□ 0.72
GPC3-202ENST00000394299 CDC42BPGQ6DT37 1551 aa19.58■□□□□ 0.72
GPC3-202ENST00000394299 PHACTR3Q96KR7 559 aa19.57■□□□□ 0.72
GPC3-202ENST00000394299 MAP2P11137 1827 aaKnown RBP19.56■□□□□ 0.72
GPC3-202ENST00000394299 SOX12O15370 315 aa19.56■□□□□ 0.72
GPC3-202ENST00000394299 RSPH6AQ9H0K4 717 aa19.56■□□□□ 0.72
GPC3-202ENST00000394299 TTC21BQ7Z4L5 1316 aa19.56■□□□□ 0.72
GPC3-202ENST00000394299 KCNA6P17658 529 aa19.56■□□□□ 0.72
GPC3-202ENST00000394299 IL13P35225 146 aa19.56■□□□□ 0.72
GPC3-202ENST00000394299 RBM33Q96EV2 1170 aaKnown RBP19.56■□□□□ 0.72
GPC3-202ENST00000394299 ADGRB2O60241 1585 aa19.55■□□□□ 0.72
GPC3-202ENST00000394299 MSH5O43196 834 aa19.55■□□□□ 0.72
GPC3-202ENST00000394299 PLEKHG3A1L390 1219 aa19.55■□□□□ 0.72
GPC3-202ENST00000394299 FCHSD2O94868 740 aa19.55■□□□□ 0.72
GPC3-202ENST00000394299 CANXP27824 592 aaKnown RBP19.55■□□□□ 0.72
GPC3-202ENST00000394299 COG6Q9Y2V7 657 aa19.55■□□□□ 0.72
GPC3-202ENST00000394299 MYH16Q9H6N6 1097 aa19.54■□□□□ 0.72
GPC3-202ENST00000394299 FANCIQ9NVI1 1328 aa19.53■□□□□ 0.72
GPC3-202ENST00000394299 EXOSC9Q06265 439 aaKnown RBP19.53■□□□□ 0.72
GPC3-202ENST00000394299 THUMPD2Q9BTF0 503 aaKnown RBP19.52■□□□□ 0.72
GPC3-202ENST00000394299 KDM2BQ8NHM5 1336 aa19.51■□□□□ 0.71
GPC3-202ENST00000394299 RLBP1P12271 317 aa19.51■□□□□ 0.71
GPC3-202ENST00000394299 NCBP3Q53F19 620 aaKnown RBP19.51■□□□□ 0.71
GPC3-202ENST00000394299 CLUAP1Q96AJ1 413 aa19.51■□□□□ 0.71
GPC3-202ENST00000394299 MON2Q7Z3U7 1717 aa19.5■□□□□ 0.71
GPC3-202ENST00000394299 AATKQ6ZMQ8 1374 aa19.5■□□□□ 0.71
GPC3-202ENST00000394299 LRRC7Q96NW7 1537 aa19.49■□□□□ 0.71
GPC3-202ENST00000394299 LAS1LQ9Y4W2 734 aaKnown RBP19.49■□□□□ 0.71
GPC3-202ENST00000394299 AKAP12Q02952 1782 aa19.49■□□□□ 0.71
GPC3-202ENST00000394299 PDE3AQ14432 1141 aa19.48■□□□□ 0.71
GPC3-202ENST00000394299 NGDNQ8NEJ9 315 aaKnown RBP19.48■□□□□ 0.71
GPC3-202ENST00000394299 PNNQ9H307 717 aaKnown RBP19.48■□□□□ 0.71
GPC3-202ENST00000394299 RIMS1Q86UR5 1692 aaKnown RBP19.48■□□□□ 0.71
GPC3-202ENST00000394299 USP6P35125 1406 aa19.48■□□□□ 0.71
GPC3-202ENST00000394299 ITSN1Q15811 1721 aa19.47■□□□□ 0.71
GPC3-202ENST00000394299 TCERG1O14776 1098 aaKnown RBP19.47■□□□□ 0.71
GPC3-202ENST00000394299 IGHDP01880 384 aa19.47■□□□□ 0.71
GPC3-202ENST00000394299 HSP90AB2PQ58FF8 381 aa19.46■□□□□ 0.71
GPC3-202ENST00000394299 AEBP1Q8IUX7 1158 aa19.46■□□□□ 0.71
GPC3-202ENST00000394299 CEP170BQ9Y4F5 1589 aaPredicted RBP19.46■□□□□ 0.71
GPC3-202ENST00000394299 NEFMP07197 916 aa19.45■□□□□ 0.7
GPC3-202ENST00000394299 EIF4A2Q14240 407 aaKnown RBP19.45■□□□□ 0.7
GPC3-202ENST00000394299 NFE2L2Q16236 605 aa19.45■□□□□ 0.7
GPC3-202ENST00000394299 NUTM2GQ5VZR2 741 aa19.45■□□□□ 0.7
GPC3-202ENST00000394299 ANKLE2Q86XL3 938 aa19.45■□□□□ 0.7
GPC3-202ENST00000394299 PTCH1Q13635 1447 aa19.45■□□□□ 0.7
GPC3-202ENST00000394299 CENPQQ7L2Z9 268 aaPredicted RBP19.44■□□□□ 0.7
GPC3-202ENST00000394299 CDK12Q9NYV4 1490 aaPredicted RBP19.44■□□□□ 0.7
GPC3-202ENST00000394299 SSH1Q8WYL5 1049 aa19.44■□□□□ 0.7
GPC3-202ENST00000394299 FAM83GA6ND36 823 aa19.43■□□□□ 0.7
GPC3-202ENST00000394299 PDE4AP27815 886 aa19.43■□□□□ 0.7
GPC3-202ENST00000394299 RGPD8O14715 1765 aaPredicted RBP19.43■□□□□ 0.7
GPC3-202ENST00000394299 TOPAZ1Q8N9V7 1692 aa19.43■□□□□ 0.7
GPC3-202ENST00000394299 DCTN1Q14203 1278 aa19.42■□□□□ 0.7
GPC3-202ENST00000394299 SMC4Q9NTJ3 1288 aa19.42■□□□□ 0.7
GPC3-202ENST00000394299 OVOS2A0A0J9YW53 1432 aa19.42■□□□□ 0.7
GPC3-202ENST00000394299 OVOS2Q6IE36 1432 aa19.42■□□□□ 0.7
GPC3-202ENST00000394299 SSH2Q76I76 1423 aa19.42■□□□□ 0.7
GPC3-202ENST00000394299 SULT6B1Q6IMI4 303 aa19.42■□□□□ 0.7
GPC3-202ENST00000394299 DIP2AQ14689 1571 aa19.42■□□□□ 0.7
GPC3-202ENST00000394299 IL16Q14005 1332 aa19.41■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms