RNA–Protein interactions for RNA: ENST00000393546.8

PDLIM7-204, Transcript of PDZ and LIM domain 7, humanhuman

TSL 3

Gene PDLIM7, Length 671 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM7-204ENST00000393546 BRD4O60885 1362 aaPredicted RBP26.56■■□□□ 1.84
PDLIM7-204ENST00000393546 PLEKHG5O94827 1062 aa26.55■■□□□ 1.84
PDLIM7-204ENST00000393546 HAP1P54257 671 aaPredicted RBP26.55■■□□□ 1.84
PDLIM7-204ENST00000393546 SLC12A5Q9H2X9 1139 aa26.54■■□□□ 1.84
PDLIM7-204ENST00000393546 CABLES1Q8TDN4 633 aa26.53■■□□□ 1.84
PDLIM7-204ENST00000393546 USP6P35125 1406 aa26.52■■□□□ 1.84
PDLIM7-204ENST00000393546 ABTB2Q8N961 1025 aa26.52■■□□□ 1.84
PDLIM7-204ENST00000393546 C8orf37Q96NL8 207 aa26.52■■□□□ 1.84
PDLIM7-204ENST00000393546 ALS2Q96Q42 1657 aa26.52■■□□□ 1.84
PDLIM7-204ENST00000393546 HDGFL2Q7Z4V5 671 aaPredicted RBP26.51■■□□□ 1.83
PDLIM7-204ENST00000393546 NGLY1Q96IV0 654 aa26.51■■□□□ 1.83
PDLIM7-204ENST00000393546 CPSF1Q10570 1443 aaKnown RBP26.5■■□□□ 1.83
PDLIM7-204ENST00000393546 TERF2IPQ9NYB0 399 aa26.5■■□□□ 1.83
PDLIM7-204ENST00000393546 RGS17Q9UGC6 210 aaPredicted RBP26.5■■□□□ 1.83
PDLIM7-204ENST00000393546 KTN1Q86UP2 1357 aaKnown RBP26.49■■□□□ 1.83
PDLIM7-204ENST00000393546 NINLQ9Y2I6 1382 aa26.49■■□□□ 1.83
PDLIM7-204ENST00000393546 NUTM2GQ5VZR2 741 aa26.48■■□□□ 1.83
PDLIM7-204ENST00000393546 ZNF772Q68DY9 489 aaPredicted RBP26.47■■□□□ 1.83
PDLIM7-204ENST00000393546 AKAP12Q02952 1782 aa26.46■■□□□ 1.83
PDLIM7-204ENST00000393546 NLRP13Q86W25 1043 aa26.46■■□□□ 1.83
PDLIM7-204ENST00000393546 AFF2P51816 1311 aa26.45■■□□□ 1.83
PDLIM7-204ENST00000393546 TTC21BQ7Z4L5 1316 aa26.45■■□□□ 1.83
PDLIM7-204ENST00000393546 SSH2Q76I76 1423 aa26.45■■□□□ 1.82
PDLIM7-204ENST00000393546 TTC21AQ8NDW8 1320 aa26.43■■□□□ 1.82
PDLIM7-204ENST00000393546 NLRP6P59044 892 aa26.43■■□□□ 1.82
PDLIM7-204ENST00000393546 CD163L1Q9NR16 1453 aa26.42■■□□□ 1.82
PDLIM7-204ENST00000393546 FNBP4Q8N3X1 1017 aaPredicted RBP26.41■■□□□ 1.82
PDLIM7-204ENST00000393546 POLR3GLQ9BT43 218 aa26.41■■□□□ 1.82
PDLIM7-204ENST00000393546 MARF1Q9Y4F3 1742 aaKnown RBP26.41■■□□□ 1.82
PDLIM7-204ENST00000393546 POTEAQ6S8J7 498 aa26.4■■□□□ 1.82
PDLIM7-204ENST00000393546 A0A1W2PP64 1363 aa26.4■■□□□ 1.82
PDLIM7-204ENST00000393546 SUGP2Q8IX01 1082 aaKnown RBP eCLIP26.39■■□□□ 1.82
PDLIM7-204ENST00000393546 USP21Q9UK80 565 aa26.39■■□□□ 1.82
PDLIM7-204ENST00000393546 MON2Q7Z3U7 1717 aa26.39■■□□□ 1.81
PDLIM7-204ENST00000393546 ABCA3Q99758 1704 aa26.39■■□□□ 1.81
PDLIM7-204ENST00000393546 EDC4Q6P2E9 1401 aaKnown RBP26.37■■□□□ 1.81
PDLIM7-204ENST00000393546 USP19O94966 1318 aa26.37■■□□□ 1.81
PDLIM7-204ENST00000393546 ANKRD36BQ8N2N9 1353 aa26.36■■□□□ 1.81
PDLIM7-204ENST00000393546 FAM83GA6ND36 823 aa26.36■■□□□ 1.81
PDLIM7-204ENST00000393546 GCP02774 474 aa26.35■■□□□ 1.81
PDLIM7-204ENST00000393546 QTRT2Q9H974 415 aaKnown RBP26.35■■□□□ 1.81
PDLIM7-204ENST00000393546 CRYBG1Q9Y4K1 1723 aa26.34■■□□□ 1.81
PDLIM7-204ENST00000393546 ZC3H6P61129 1189 aaKnown RBP26.34■■□□□ 1.81
PDLIM7-204ENST00000393546 NRKQ7Z2Y5 1582 aa26.33■■□□□ 1.81
PDLIM7-204ENST00000393546 PRDM11Q9NQV5 511 aa26.33■■□□□ 1.81
PDLIM7-204ENST00000393546 PIK3C2AO00443 1686 aa26.32■■□□□ 1.8
PDLIM7-204ENST00000393546 C11orf95C9JLR9 678 aaPredicted RBP26.32■■□□□ 1.8
PDLIM7-204ENST00000393546 NME9Q86XW9 330 aa26.32■■□□□ 1.8
PDLIM7-204ENST00000393546 PHRF1Q9P1Y6 1649 aaKnown RBP26.32■■□□□ 1.8
PDLIM7-204ENST00000393546 TRPC5Q9UL62 973 aaPredicted RBP26.31■■□□□ 1.8
PDLIM7-204ENST00000393546 RXRBP28702 533 aa26.3■■□□□ 1.8
PDLIM7-204ENST00000393546 UNC5CLQ8IV45 518 aa26.3■■□□□ 1.8
PDLIM7-204ENST00000393546 KCNH5Q8NCM2 988 aa26.3■■□□□ 1.8
PDLIM7-204ENST00000393546 KIAA0232Q92628 1395 aa26.3■■□□□ 1.8
PDLIM7-204ENST00000393546 SLIT2O94813 1529 aa26.29■■□□□ 1.8
PDLIM7-204ENST00000393546 ZRANB1Q9UGI0 708 aa26.29■■□□□ 1.8
PDLIM7-204ENST00000393546 USP31Q70CQ4 1352 aa26.29■■□□□ 1.8
PDLIM7-204ENST00000393546 BCL9LQ86UU0 1499 aa26.29■■□□□ 1.8
PDLIM7-204ENST00000393546 CHRNA2Q15822 529 aa26.27■■□□□ 1.8
PDLIM7-204ENST00000393546 BTG4Q9NY30 223 aa26.27■■□□□ 1.8
PDLIM7-204ENST00000393546 COL14A1Q05707 1796 aaKnown RBP26.26■■□□□ 1.79
PDLIM7-204ENST00000393546 MYOM1P52179 1685 aa26.26■■□□□ 1.79
PDLIM7-204ENST00000393546 SLIT3O75094 1523 aa26.26■■□□□ 1.79
PDLIM7-204ENST00000393546 CPDO75976 1380 aa26.26■■□□□ 1.79
PDLIM7-204ENST00000393546 RBM6P78332 1123 aaKnown RBP26.26■■□□□ 1.79
PDLIM7-204ENST00000393546 SOX12O15370 315 aa26.24■■□□□ 1.79
PDLIM7-204ENST00000393546 ZEB1P37275 1124 aaPredicted RBP26.24■■□□□ 1.79
PDLIM7-204ENST00000393546 CARD14Q9BXL6 1004 aa26.24■■□□□ 1.79
PDLIM7-204ENST00000393546 ATRNO75882 1429 aa26.23■■□□□ 1.79
PDLIM7-204ENST00000393546 NWD2Q9ULI1 1742 aa26.23■■□□□ 1.79
PDLIM7-204ENST00000393546 KIF7Q2M1P5 1343 aa26.23■■□□□ 1.79
PDLIM7-204ENST00000393546 PLCH1Q4KWH8 1693 aa26.23■■□□□ 1.79
PDLIM7-204ENST00000393546 ZBTB7CA1YPR0 619 aa26.23■■□□□ 1.79
PDLIM7-204ENST00000393546 COG3Q96JB2 828 aa26.23■■□□□ 1.79
PDLIM7-204ENST00000393546 FYB1O15117 783 aa26.21■■□□□ 1.79
PDLIM7-204ENST00000393546 TNKS1BP1Q9C0C2 1729 aaKnown RBP26.21■■□□□ 1.79
PDLIM7-204ENST00000393546 VPS72Q15906 364 aa26.2■■□□□ 1.78
PDLIM7-204ENST00000393546 GJD4Q96KN9 370 aaPredicted RBP26.2■■□□□ 1.78
PDLIM7-204ENST00000393546 PANK3Q9H999 370 aa26.2■■□□□ 1.78
PDLIM7-204ENST00000393546 ARHGEF25Q86VW2 580 aa26.19■■□□□ 1.78
PDLIM7-204ENST00000393546 CCDC9Q9Y3X0 531 aaKnown RBP26.19■■□□□ 1.78
PDLIM7-204ENST00000393546 NSD3Q9BZ95 1437 aa26.19■■□□□ 1.78
PDLIM7-204ENST00000393546 USP54Q70EL1 1684 aa26.19■■□□□ 1.78
PDLIM7-204ENST00000393546 EVA1CP58658 441 aa26.18■■□□□ 1.78
PDLIM7-204ENST00000393546 GGNBP2Q9H3C7 697 aa26.18■■□□□ 1.78
PDLIM7-204ENST00000393546 OVOS2A0A0J9YW53 1432 aa26.17■■□□□ 1.78
PDLIM7-204ENST00000393546 OVOS2Q6IE36 1432 aa26.17■■□□□ 1.78
PDLIM7-204ENST00000393546 STRN4Q9NRL3 753 aa26.16■■□□□ 1.78
PDLIM7-204ENST00000393546 AATKQ6ZMQ8 1374 aa26.16■■□□□ 1.78
PDLIM7-204ENST00000393546 CGNL1Q0VF96 1302 aa26.14■■□□□ 1.78
PDLIM7-204ENST00000393546 CCDC7Q96M83 1385 aa26.14■■□□□ 1.78
PDLIM7-204ENST00000393546 NFAT5O94916 1531 aa26.14■■□□□ 1.77
PDLIM7-204ENST00000393546 NRAPQ86VF7 1730 aa26.13■■□□□ 1.77
PDLIM7-204ENST00000393546 WASHC2AQ641Q2 1341 aa26.13■■□□□ 1.77
PDLIM7-204ENST00000393546 CAMTA1Q9Y6Y1 1673 aa26.12■■□□□ 1.77
PDLIM7-204ENST00000393546 CDK12Q9NYV4 1490 aaPredicted RBP26.12■■□□□ 1.77
PDLIM7-204ENST00000393546 LMO7Q8WWI1 1683 aa26.1■■□□□ 1.77
PDLIM7-204ENST00000393546 KIF20BQ96Q89 1820 aa26.1■■□□□ 1.77
PDLIM7-204ENST00000393546 AXIN2Q9Y2T1 843 aa26.09■■□□□ 1.77
PDLIM7-204ENST00000393546 KNSTRNQ9Y448 316 aa26.09■■□□□ 1.77
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms