RNA–Protein interactions for RNA: ENST00000392770.6

SCN3B-202, Transcript of sodium voltage-gated channel beta subunit 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SCN3B, Length 6,061 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN3B-202ENST00000392770 SLC4A2P04920 1241 aa20.3■□□□□ 0.84
SCN3B-202ENST00000392770 XPCQ01831 940 aaPredicted RBP20.3■□□□□ 0.84
SCN3B-202ENST00000392770 STRN4Q9NRL3 753 aa20.3■□□□□ 0.84
SCN3B-202ENST00000392770 DNMT1P26358 1616 aaKnown RBP20.3■□□□□ 0.84
SCN3B-202ENST00000392770 CEBPAP49715 358 aaPredicted RBP20.3■□□□□ 0.84
SCN3B-202ENST00000392770 SLFN5Q08AF3 891 aa20.29■□□□□ 0.84
SCN3B-202ENST00000392770 PDZRN3Q9UPQ7 1066 aa20.29■□□□□ 0.84
SCN3B-202ENST00000392770 ERC2O15083 957 aa20.29■□□□□ 0.84
SCN3B-202ENST00000392770 MSH5O43196 834 aa20.29■□□□□ 0.84
SCN3B-202ENST00000392770 GNAI3P08754 354 aa20.29■□□□□ 0.84
SCN3B-202ENST00000392770 SHANK2Q9UPX8 1470 aa20.29■□□□□ 0.84
SCN3B-202ENST00000392770 KIF3AQ9Y496 699 aa20.28■□□□□ 0.84
SCN3B-202ENST00000392770 SAMD9Q5K651 1589 aa20.28■□□□□ 0.84
SCN3B-202ENST00000392770 H3BQV1 296 aa20.28■□□□□ 0.84
SCN3B-202ENST00000392770 IFFO2Q5TF58 517 aa20.28■□□□□ 0.84
SCN3B-202ENST00000392770 CDC45O75419 566 aa20.28■□□□□ 0.84
SCN3B-202ENST00000392770 TMPOP42166 694 aaKnown RBP20.28■□□□□ 0.84
SCN3B-202ENST00000392770 C22orf23Q9BZE7 217 aa20.28■□□□□ 0.84
SCN3B-202ENST00000392770 ZKSCAN1P17029 563 aaPredicted RBP20.27■□□□□ 0.84
SCN3B-202ENST00000392770 ZNF530Q6P9A1 599 aaPredicted RBP20.27■□□□□ 0.84
SCN3B-202ENST00000392770 ABCC2Q92887 1545 aa20.27■□□□□ 0.84
SCN3B-202ENST00000392770 NFE2L2Q16236 605 aa20.27■□□□□ 0.84
SCN3B-202ENST00000392770 NME9Q86XW9 330 aa20.27■□□□□ 0.83
SCN3B-202ENST00000392770 CHAF1AQ13111 956 aaPredicted RBP20.26■□□□□ 0.83
SCN3B-202ENST00000392770 WASLO00401 505 aaPredicted RBP20.26■□□□□ 0.83
SCN3B-202ENST00000392770 FAM184AQ8NB25 1140 aa20.26■□□□□ 0.83
SCN3B-202ENST00000392770 CEP170Q5SW79 1584 aa20.26■□□□□ 0.83
SCN3B-202ENST00000392770 TEX14Q8IWB6 1497 aa20.25■□□□□ 0.83
SCN3B-202ENST00000392770 HDGFL1Q5TGJ6 251 aa20.25■□□□□ 0.83
SCN3B-202ENST00000392770 ATF7IPQ6VMQ6 1270 aa20.25■□□□□ 0.83
SCN3B-202ENST00000392770 AMOTL2Q9Y2J4 779 aa20.24■□□□□ 0.83
SCN3B-202ENST00000392770 MVPQ14764 893 aaKnown RBP20.24■□□□□ 0.83
SCN3B-202ENST00000392770 FOXD4L6Q3SYB3 417 aaPredicted RBP20.24■□□□□ 0.83
SCN3B-202ENST00000392770 FOXD4L3Q6VB84 417 aaPredicted RBP20.24■□□□□ 0.83
SCN3B-202ENST00000392770 PRAG1Q86YV5 1406 aa20.24■□□□□ 0.83
SCN3B-202ENST00000392770 AEBP2Q6ZN18 517 aaPredicted RBP20.23■□□□□ 0.83
SCN3B-202ENST00000392770 TOM1L2Q6ZVM7 507 aa20.23■□□□□ 0.83
SCN3B-202ENST00000392770 SPG7Q9UQ90 795 aa20.23■□□□□ 0.83
SCN3B-202ENST00000392770 GNAI2P04899 355 aa20.23■□□□□ 0.83
SCN3B-202ENST00000392770 GCC1Q96CN9 775 aa20.23■□□□□ 0.83
SCN3B-202ENST00000392770 NEUROD6Q96NK8 337 aa20.23■□□□□ 0.83
SCN3B-202ENST00000392770 CABP4P57796 275 aa20.23■□□□□ 0.83
SCN3B-202ENST00000392770 PHF14O94880 888 aa20.22■□□□□ 0.83
SCN3B-202ENST00000392770 SURF6O75683 361 aaKnown RBP20.22■□□□□ 0.83
SCN3B-202ENST00000392770 RBM42Q9BTD8 480 aaKnown RBP20.22■□□□□ 0.83
SCN3B-202ENST00000392770 EIF2AK4Q9P2K8 1649 aaKnown RBP20.22■□□□□ 0.83
SCN3B-202ENST00000392770 TPM4P67936 248 aa20.22■□□□□ 0.83
SCN3B-202ENST00000392770 RNF20Q5VTR2 975 aa20.22■□□□□ 0.83
SCN3B-202ENST00000392770 APPP05067 770 aa20.21■□□□□ 0.83
SCN3B-202ENST00000392770 CCT4P50991 539 aaKnown RBP20.21■□□□□ 0.83
SCN3B-202ENST00000392770 VPS37DQ86XT2 251 aa20.21■□□□□ 0.83
SCN3B-202ENST00000392770 TARBP1Q13395 1621 aaKnown RBP20.2■□□□□ 0.82
SCN3B-202ENST00000392770 TNRQ92752 1358 aa20.2■□□□□ 0.82
SCN3B-202ENST00000392770 SF3A1Q15459 793 aaKnown RBP20.2■□□□□ 0.82
SCN3B-202ENST00000392770 KIF6Q6ZMV9 814 aa20.2■□□□□ 0.82
SCN3B-202ENST00000392770 CHMP4CQ96CF2 233 aa20.2■□□□□ 0.82
SCN3B-202ENST00000392770 DDX49Q9Y6V7 483 aaKnown RBP20.2■□□□□ 0.82
SCN3B-202ENST00000392770 ATP6V1DQ9Y5K8 247 aa20.19■□□□□ 0.82
SCN3B-202ENST00000392770 EMILIN1Q9Y6C2 1016 aa20.19■□□□□ 0.82
SCN3B-202ENST00000392770 CNTROBQ8N137 903 aa20.19■□□□□ 0.82
SCN3B-202ENST00000392770 ABCC10Q5T3U5 1492 aa20.19■□□□□ 0.82
SCN3B-202ENST00000392770 NSD2O96028 1365 aa20.19■□□□□ 0.82
SCN3B-202ENST00000392770 BTBD11A6QL63 1104 aa20.19■□□□□ 0.82
SCN3B-202ENST00000392770 GNAT3A8MTJ3 354 aa20.19■□□□□ 0.82
SCN3B-202ENST00000392770 KIAA2012Q0VF49 1180 aa20.19■□□□□ 0.82
SCN3B-202ENST00000392770 KCNH5Q8NCM2 988 aa20.19■□□□□ 0.82
SCN3B-202ENST00000392770 CLSTN1O94985 981 aa20.18■□□□□ 0.82
SCN3B-202ENST00000392770 SKOR2Q2VWA4 1001 aaPredicted RBP20.18■□□□□ 0.82
SCN3B-202ENST00000392770 DDX54Q8TDD1 881 aaKnown RBP20.18■□□□□ 0.82
SCN3B-202ENST00000392770 RASSF8Q8NHQ8 419 aa20.18■□□□□ 0.82
SCN3B-202ENST00000392770 THUMPD2Q9BTF0 503 aaKnown RBP20.18■□□□□ 0.82
SCN3B-202ENST00000392770 SYNE3Q6ZMZ3 975 aa20.18■□□□□ 0.82
SCN3B-202ENST00000392770 CHMP5Q9NZZ3 219 aa20.17■□□□□ 0.82
SCN3B-202ENST00000392770 CCDC34Q96HJ3 373 aa20.17■□□□□ 0.82
SCN3B-202ENST00000392770 NOL10Q9BSC4 688 aaKnown RBP20.17■□□□□ 0.82
SCN3B-202ENST00000392770 ZC3H6P61129 1189 aaKnown RBP20.16■□□□□ 0.82
SCN3B-202ENST00000392770 MCM10Q7L590 875 aa20.16■□□□□ 0.82
SCN3B-202ENST00000392770 NKTRP30414 1462 aaKnown RBP20.16■□□□□ 0.82
SCN3B-202ENST00000392770 CLASRPQ8N2M8 674 aaKnown RBP20.16■□□□□ 0.82
SCN3B-202ENST00000392770 MCTP1Q6DN14 999 aa20.16■□□□□ 0.82
SCN3B-202ENST00000392770 MIS18AQ9NYP9 233 aa20.15■□□□□ 0.82
SCN3B-202ENST00000392770 MYL6BP14649 208 aa20.15■□□□□ 0.82
SCN3B-202ENST00000392770 AKAP17AQ02040 695 aaKnown RBP20.15■□□□□ 0.82
SCN3B-202ENST00000392770 RBM33Q96EV2 1170 aaKnown RBP20.15■□□□□ 0.82
SCN3B-202ENST00000392770 PRDM11Q9NQV5 511 aa20.14■□□□□ 0.82
SCN3B-202ENST00000392770 AMOTL1Q8IY63 956 aa20.14■□□□□ 0.81
SCN3B-202ENST00000392770 SRCIN1Q9C0H9 1055 aa20.14■□□□□ 0.81
SCN3B-202ENST00000392770 PZPP20742 1482 aa20.14■□□□□ 0.81
SCN3B-202ENST00000392770 DCTN1Q14203 1278 aa20.14■□□□□ 0.81
SCN3B-202ENST00000392770 IFT57Q9NWB7 429 aa20.14■□□□□ 0.81
SCN3B-202ENST00000392770 FSD1Q9BTV5 496 aa20.14■□□□□ 0.81
SCN3B-202ENST00000392770 PHF8Q9UPP1 1060 aa20.13■□□□□ 0.81
SCN3B-202ENST00000392770 NUTM2BA6NNL0 878 aaPredicted RBP20.13■□□□□ 0.81
SCN3B-202ENST00000392770 NUTM2EB1AL46 878 aaPredicted RBP20.13■□□□□ 0.81
SCN3B-202ENST00000392770 ERC1Q8IUD2 1116 aa20.13■□□□□ 0.81
SCN3B-202ENST00000392770 NUTM2AQ8IVF1 878 aaPredicted RBP20.13■□□□□ 0.81
SCN3B-202ENST00000392770 ZNF428Q96B54 188 aa20.13■□□□□ 0.81
SCN3B-202ENST00000392770 MAST1Q9Y2H9 1570 aa20.12■□□□□ 0.81
SCN3B-202ENST00000392770 FAM177BA6PVY3 158 aa20.12■□□□□ 0.81
SCN3B-202ENST00000392770 ASXL1Q8IXJ9 1541 aa20.12■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms