RNA–Protein interactions for RNA: ENST00000378026.4

CKAP4-201, Transcript of cytoskeleton associated protein 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CKAP4, Length 3,093 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKAP4-201ENST00000378026 PDZRN4Q6ZMN7 1036 aaPredicted RBP19.72■□□□□ 0.75
CKAP4-201ENST00000378026 PTMSP20962 102 aa19.71■□□□□ 0.75
CKAP4-201ENST00000378026 SPAG9O60271 1321 aaKnown RBP19.71■□□□□ 0.75
CKAP4-201ENST00000378026 KLHL40Q2TBA0 621 aa19.71■□□□□ 0.75
CKAP4-201ENST00000378026 CALD1Q05682 793 aaKnown RBP19.7■□□□□ 0.74
CKAP4-201ENST00000378026 SPHKAPQ2M3C7 1700 aa19.7■□□□□ 0.74
CKAP4-201ENST00000378026 CLTCL1P53675 1640 aa19.7■□□□□ 0.74
CKAP4-201ENST00000378026 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP19.7■□□□□ 0.74
CKAP4-201ENST00000378026 PTPRTO14522 1441 aa19.7■□□□□ 0.74
CKAP4-201ENST00000378026 KIF3BO15066 747 aa19.7■□□□□ 0.74
CKAP4-201ENST00000378026 TMPOP42166 694 aaKnown RBP19.7■□□□□ 0.74
CKAP4-201ENST00000378026 TRAPPC8Q9Y2L5 1435 aa19.69■□□□□ 0.74
CKAP4-201ENST00000378026 BMP2KLQ5H9B9 411 aa19.69■□□□□ 0.74
CKAP4-201ENST00000378026 EFCAB2Q5VUJ9 269 aa19.69■□□□□ 0.74
CKAP4-201ENST00000378026 TRIM35Q9UPQ4 493 aa19.69■□□□□ 0.74
CKAP4-201ENST00000378026 PKP1Q13835 747 aa19.69■□□□□ 0.74
CKAP4-201ENST00000378026 SAFB2Q14151 953 aaKnown RBP eCLIP19.69■□□□□ 0.74
CKAP4-201ENST00000378026 RBSNQ9H1K0 784 aa19.68■□□□□ 0.74
CKAP4-201ENST00000378026 RBM27Q9P2N5 1060 aaKnown RBP19.68■□□□□ 0.74
CKAP4-201ENST00000378026 AK9Q5TCS8 1911 aa19.68■□□□□ 0.74
CKAP4-201ENST00000378026 KANK1Q14678 1352 aa19.68■□□□□ 0.74
CKAP4-201ENST00000378026 ZNF518AQ6AHZ1 1483 aa19.68■□□□□ 0.74
CKAP4-201ENST00000378026 CHAMP1Q96JM3 812 aa19.67■□□□□ 0.74
CKAP4-201ENST00000378026 UGGT1Q9NYU2 1555 aa19.67■□□□□ 0.74
CKAP4-201ENST00000378026 IPO8O15397 1037 aaKnown RBP19.67■□□□□ 0.74
CKAP4-201ENST00000378026 ZSCAN23Q3MJ62 389 aa19.67■□□□□ 0.74
CKAP4-201ENST00000378026 UQCRHLA0A096LP55 91 aa19.67■□□□□ 0.74
CKAP4-201ENST00000378026 TRPM2O94759 1503 aa19.67■□□□□ 0.74
CKAP4-201ENST00000378026 UQCRHP07919 91 aa19.67■□□□□ 0.74
CKAP4-201ENST00000378026 FOXD4L5Q5VV16 416 aaPredicted RBP19.66■□□□□ 0.74
CKAP4-201ENST00000378026 FOXD4L4Q8WXT5 416 aaPredicted RBP19.66■□□□□ 0.74
CKAP4-201ENST00000378026 CT47B1P0C2W7 299 aaPredicted RBP19.66■□□□□ 0.74
CKAP4-201ENST00000378026 PRIM1P49642 420 aaKnown RBP19.66■□□□□ 0.74
CKAP4-201ENST00000378026 ELL2O00472 640 aaPredicted RBP19.65■□□□□ 0.74
CKAP4-201ENST00000378026 PRPF40AO75400 957 aaKnown RBP19.65■□□□□ 0.74
CKAP4-201ENST00000378026 NUTM2DQ5VT03 806 aaPredicted RBP19.65■□□□□ 0.74
CKAP4-201ENST00000378026 GGNBP2Q9H3C7 697 aa19.65■□□□□ 0.74
CKAP4-201ENST00000378026 KIF16BQ96L93 1317 aa19.63■□□□□ 0.73
CKAP4-201ENST00000378026 CABP2Q9NPB3 220 aa19.62■□□□□ 0.73
CKAP4-201ENST00000378026 CD109Q6YHK3 1445 aa19.62■□□□□ 0.73
CKAP4-201ENST00000378026 RNF214Q8ND24 703 aa19.62■□□□□ 0.73
CKAP4-201ENST00000378026 EIF2AK3Q9NZJ5 1116 aaKnown RBP19.62■□□□□ 0.73
CKAP4-201ENST00000378026 LMBRD1Q9NUN5 540 aa19.61■□□□□ 0.73
CKAP4-201ENST00000378026 PLEKHF1Q96S99 279 aa19.61■□□□□ 0.73
CKAP4-201ENST00000378026 NOL7Q9UMY1 257 aaKnown RBP19.61■□□□□ 0.73
CKAP4-201ENST00000378026 PRDM10Q9NQV6 1147 aa19.6■□□□□ 0.73
CKAP4-201ENST00000378026 ZNF445P59923 1031 aa19.6■□□□□ 0.73
CKAP4-201ENST00000378026 ABCA6Q8N139 1617 aa19.6■□□□□ 0.73
CKAP4-201ENST00000378026 MPNDQ8N594 471 aa19.6■□□□□ 0.73
CKAP4-201ENST00000378026 ZGPATQ8N5A5 531 aaKnown RBP19.59■□□□□ 0.73
CKAP4-201ENST00000378026 PPIP5K1Q6PFW1 1433 aa19.59■□□□□ 0.73
CKAP4-201ENST00000378026 CDC45O75419 566 aa19.59■□□□□ 0.73
CKAP4-201ENST00000378026 ZBTB7BO15156 539 aaPredicted RBP19.58■□□□□ 0.73
CKAP4-201ENST00000378026 SYCE3A1L190 88 aa19.58■□□□□ 0.72
CKAP4-201ENST00000378026 APBB1O00213 710 aa19.58■□□□□ 0.72
CKAP4-201ENST00000378026 THUMPD2Q9BTF0 503 aaKnown RBP19.58■□□□□ 0.72
CKAP4-201ENST00000378026 GCC1Q96CN9 775 aa19.57■□□□□ 0.72
CKAP4-201ENST00000378026 PRDM4Q9UKN5 801 aa19.57■□□□□ 0.72
CKAP4-201ENST00000378026 NOS1P29475 1434 aa19.57■□□□□ 0.72
CKAP4-201ENST00000378026 NUCB2P80303 420 aa19.57■□□□□ 0.72
CKAP4-201ENST00000378026 SIRT2Q8IXJ6 389 aa19.57■□□□□ 0.72
CKAP4-201ENST00000378026 GPT2Q8TD30 523 aa19.57■□□□□ 0.72
CKAP4-201ENST00000378026 GSPT1P15170 499 aaKnown RBP19.57■□□□□ 0.72
CKAP4-201ENST00000378026 C16orf71Q8IYS4 520 aaPredicted RBP19.56■□□□□ 0.72
CKAP4-201ENST00000378026 MAP3K4Q9Y6R4 1608 aa19.56■□□□□ 0.72
CKAP4-201ENST00000378026 ABCC11Q96J66 1382 aa19.55■□□□□ 0.72
CKAP4-201ENST00000378026 IBTKQ9P2D0 1353 aaPredicted RBP19.55■□□□□ 0.72
CKAP4-201ENST00000378026 CLEC17AQ6ZS10 378 aa19.55■□□□□ 0.72
CKAP4-201ENST00000378026 NSFL1CQ9UNZ2 370 aaKnown RBP19.55■□□□□ 0.72
CKAP4-201ENST00000378026 ZNF500O60304 480 aaPredicted RBP19.55■□□□□ 0.72
CKAP4-201ENST00000378026 ZKSCAN5Q9Y2L8 839 aa19.55■□□□□ 0.72
CKAP4-201ENST00000378026 ATAD2Q6PL18 1390 aa19.54■□□□□ 0.72
CKAP4-201ENST00000378026 RABEP1Q15276 862 aa19.54■□□□□ 0.72
CKAP4-201ENST00000378026 JARID2Q92833 1246 aaPredicted RBP19.54■□□□□ 0.72
CKAP4-201ENST00000378026 PLCH2O75038 1416 aa19.54■□□□□ 0.72
CKAP4-201ENST00000378026 PTMAP06454 111 aaKnown RBP19.54■□□□□ 0.72
CKAP4-201ENST00000378026 TERF1P54274 439 aa19.53■□□□□ 0.72
CKAP4-201ENST00000378026 FOXD4L6Q3SYB3 417 aaPredicted RBP19.53■□□□□ 0.72
CKAP4-201ENST00000378026 TPRNQ4KMQ1 711 aa19.53■□□□□ 0.72
CKAP4-201ENST00000378026 FOXD4L3Q6VB84 417 aaPredicted RBP19.53■□□□□ 0.72
CKAP4-201ENST00000378026 TSPYL6Q8N831 410 aa19.53■□□□□ 0.72
CKAP4-201ENST00000378026 TMEM63CQ9P1W3 806 aa19.53■□□□□ 0.72
CKAP4-201ENST00000378026 PDLIM2Q96JY6 352 aa19.53■□□□□ 0.72
CKAP4-201ENST00000378026 SBNO2Q9Y2G9 1366 aa19.53■□□□□ 0.72
CKAP4-201ENST00000378026 FBLN1P23142 703 aa19.53■□□□□ 0.72
CKAP4-201ENST00000378026 MAP7D2Q96T17 732 aa19.53■□□□□ 0.72
CKAP4-201ENST00000378026 HS1BP3Q53T59 392 aa19.52■□□□□ 0.72
CKAP4-201ENST00000378026 DNTTIP2Q5QJE6 756 aaKnown RBP19.52■□□□□ 0.72
CKAP4-201ENST00000378026 SRPK2P78362 688 aaKnown RBP19.51■□□□□ 0.71
CKAP4-201ENST00000378026 ALDH1L2Q3SY69 923 aa19.51■□□□□ 0.71
CKAP4-201ENST00000378026 OTUD7AQ8TE49 926 aaPredicted RBP19.51■□□□□ 0.71
CKAP4-201ENST00000378026 TSC1Q92574 1164 aa19.51■□□□□ 0.71
CKAP4-201ENST00000378026 STK26Q9P289 416 aa19.51■□□□□ 0.71
CKAP4-201ENST00000378026 ZHX1Q9UKY1 873 aaPredicted RBP19.51■□□□□ 0.71
CKAP4-201ENST00000378026 SHROOM2Q13796 1616 aa19.51■□□□□ 0.71
CKAP4-201ENST00000378026 EVC2Q86UK5 1308 aa19.5■□□□□ 0.71
CKAP4-201ENST00000378026 PLEKHM2Q8IWE5 1019 aa19.5■□□□□ 0.71
CKAP4-201ENST00000378026 CFAP74Q9C0B2 1584 aa19.5■□□□□ 0.71
CKAP4-201ENST00000378026 KIAA1210Q9ULL0 1709 aa19.5■□□□□ 0.71
CKAP4-201ENST00000378026 DIAPH1O60610 1272 aaKnown RBP19.5■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms