RNA–Protein interactions for RNA: ENST00000375340.10

SMC1A-202, Transcript of structural maintenance of chromosomes 1A, humanhuman

TSL 1 (best) BASIC

Gene SMC1A, Length 9,930 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1A-202ENST00000375340 MCM4P33991 863 aa7.97□□□□□ -1.13
SMC1A-202ENST00000375340 PRKCSHP14314 528 aaPredicted RBP7.97□□□□□ -1.13
SMC1A-202ENST00000375340 CCDC39Q9UFE4 941 aa7.97□□□□□ -1.13
SMC1A-202ENST00000375340 EID1Q9Y6B2 187 aa7.97□□□□□ -1.13
SMC1A-202ENST00000375340 KDM4AO75164 1064 aa7.97□□□□□ -1.13
SMC1A-202ENST00000375340 TNNQ9UQP3 1299 aa7.96□□□□□ -1.13
SMC1A-202ENST00000375340 IFIT2P09913 472 aaKnown RBP7.96□□□□□ -1.13
SMC1A-202ENST00000375340 TSPY26PQ9H489 355 aa7.96□□□□□ -1.13
SMC1A-202ENST00000375340 MIS18AQ9NYP9 233 aa7.96□□□□□ -1.13
SMC1A-202ENST00000375340 C9orf78Q9NZ63 289 aaPredicted RBP7.96□□□□□ -1.13
SMC1A-202ENST00000375340 CCDC173Q0VFZ6 552 aa7.96□□□□□ -1.13
SMC1A-202ENST00000375340 NOS1P29475 1434 aa7.96□□□□□ -1.14
SMC1A-202ENST00000375340 SMC3Q9UQE7 1217 aa7.96□□□□□ -1.14
SMC1A-202ENST00000375340 C1orf141Q5JVX7 400 aa7.96□□□□□ -1.14
SMC1A-202ENST00000375340 EIF4G3O43432 1585 aaKnown RBP7.96□□□□□ -1.14
SMC1A-202ENST00000375340 TMPOP42166 694 aaKnown RBP7.95□□□□□ -1.14
SMC1A-202ENST00000375340 TPM4P67936 248 aa7.95□□□□□ -1.14
SMC1A-202ENST00000375340 PLEKHH1Q9ULM0 1364 aa7.95□□□□□ -1.14
SMC1A-202ENST00000375340 NEK4P51957 841 aa7.95□□□□□ -1.14
SMC1A-202ENST00000375340 TRHP20396 242 aaPredicted RBP7.95□□□□□ -1.14
SMC1A-202ENST00000375340 GCC1Q96CN9 775 aa7.95□□□□□ -1.14
SMC1A-202ENST00000375340 FAM184AQ8NB25 1140 aa7.95□□□□□ -1.14
SMC1A-202ENST00000375340 TXNDC2Q86VQ3 553 aa7.95□□□□□ -1.14
SMC1A-202ENST00000375340 SSH1Q8WYL5 1049 aa7.95□□□□□ -1.14
SMC1A-202ENST00000375340 TAF7LQ5H9L4 462 aa7.95□□□□□ -1.14
SMC1A-202ENST00000375340 LRRIQ1Q96JM4 1722 aa7.95□□□□□ -1.14
SMC1A-202ENST00000375340 MAST1Q9Y2H9 1570 aa7.95□□□□□ -1.14
SMC1A-202ENST00000375340 CFAP65Q6ZU64 1925 aaKnown RBP7.95□□□□□ -1.14
SMC1A-202ENST00000375340 RABEP1Q15276 862 aa7.95□□□□□ -1.14
SMC1A-202ENST00000375340 KDM5AP29375 1690 aaKnown RBP7.95□□□□□ -1.14
SMC1A-202ENST00000375340 AIMP1Q12904 312 aaKnown RBP7.94□□□□□ -1.14
SMC1A-202ENST00000375340 DCTN1Q14203 1278 aa7.94□□□□□ -1.14
SMC1A-202ENST00000375340 SPC24Q8NBT2 197 aa7.94□□□□□ -1.14
SMC1A-202ENST00000375340 SLC4A2P04920 1241 aa7.94□□□□□ -1.14
SMC1A-202ENST00000375340 BICD2Q8TD16 824 aa7.94□□□□□ -1.14
SMC1A-202ENST00000375340 UBTFL1P0CB47 393 aaPredicted RBP7.94□□□□□ -1.14
SMC1A-202ENST00000375340 SSFA2P28290 1259 aa7.94□□□□□ -1.14
SMC1A-202ENST00000375340 ZNF771Q7L3S4 317 aaPredicted RBP7.93□□□□□ -1.14
SMC1A-202ENST00000375340 DUOX2Q9NRD8 1548 aa7.93□□□□□ -1.14
SMC1A-202ENST00000375340 GOLGA6L19H0YKK7 550 aa7.93□□□□□ -1.14
SMC1A-202ENST00000375340 TRIM27P14373 513 aa7.93□□□□□ -1.14
SMC1A-202ENST00000375340 ATP6V1DQ9Y5K8 247 aa7.93□□□□□ -1.14
SMC1A-202ENST00000375340 TNPO1Q92973 898 aaKnown RBP7.93□□□□□ -1.14
SMC1A-202ENST00000375340 SEC24BO95487 1268 aa7.93□□□□□ -1.14
SMC1A-202ENST00000375340 SF3A1Q15459 793 aaKnown RBP7.93□□□□□ -1.14
SMC1A-202ENST00000375340 STAC3Q96MF2 364 aa7.93□□□□□ -1.14
SMC1A-202ENST00000375340 ARHGEF12Q9NZN5 1544 aa7.93□□□□□ -1.14
SMC1A-202ENST00000375340 SULT6B1Q6IMI4 303 aa7.93□□□□□ -1.14
SMC1A-202ENST00000375340 TOMM22Q9NS69 142 aa7.93□□□□□ -1.14
SMC1A-202ENST00000375340 ADGRL1O94910 1474 aa7.93□□□□□ -1.14
SMC1A-202ENST00000375340 IFT57Q9NWB7 429 aa7.92□□□□□ -1.14
SMC1A-202ENST00000375340 UQCRHLA0A096LP55 91 aa7.92□□□□□ -1.14
SMC1A-202ENST00000375340 UQCRHP07919 91 aa7.92□□□□□ -1.14
SMC1A-202ENST00000375340 COL17A1Q9UMD9 1497 aaPredicted RBP7.92□□□□□ -1.14
SMC1A-202ENST00000375340 ATP10BO94823 1461 aa7.92□□□□□ -1.14
SMC1A-202ENST00000375340 MCM10Q7L590 875 aa7.92□□□□□ -1.14
SMC1A-202ENST00000375340 FIBPO43427 364 aa7.92□□□□□ -1.14
SMC1A-202ENST00000375340 RUFY2Q8WXA3 655 aa7.92□□□□□ -1.14
SMC1A-202ENST00000375340 ISY1Q9ULR0 285 aaKnown RBP7.92□□□□□ -1.14
SMC1A-202ENST00000375340 BCORL1Q5H9F3 1711 aa7.92□□□□□ -1.14
SMC1A-202ENST00000375340 SYCE3A1L190 88 aa7.92□□□□□ -1.14
SMC1A-202ENST00000375340 ERC2O15083 957 aa7.92□□□□□ -1.14
SMC1A-202ENST00000375340 TPM2P07951 284 aa7.92□□□□□ -1.14
SMC1A-202ENST00000375340 FBLN1P23142 703 aa7.92□□□□□ -1.14
SMC1A-202ENST00000375340 TEFQ10587 303 aa7.92□□□□□ -1.14
SMC1A-202ENST00000375340 RTEL1-TNFRSF6BF6WH68 1400 aa7.92□□□□□ -1.14
SMC1A-202ENST00000375340 STK3Q13188 491 aa7.92□□□□□ -1.14
SMC1A-202ENST00000375340 CYB5RLQ6IPT4 315 aa7.92□□□□□ -1.14
SMC1A-202ENST00000375340 CNTROBQ8N137 903 aa7.91□□□□□ -1.14
SMC1A-202ENST00000375340 CCAR2Q8N163 923 aaKnown RBP7.91□□□□□ -1.14
SMC1A-202ENST00000375340 RAPGEF3O95398 923 aa7.91□□□□□ -1.14
SMC1A-202ENST00000375340 CEBPZQ03701 1054 aaKnown RBP7.91□□□□□ -1.14
SMC1A-202ENST00000375340 BECN2A8MW95 431 aa7.91□□□□□ -1.14
SMC1A-202ENST00000375340 ZKSCAN1P17029 563 aaPredicted RBP7.91□□□□□ -1.14
SMC1A-202ENST00000375340 GNAI2P04899 355 aa7.91□□□□□ -1.14
SMC1A-202ENST00000375340 RBM27Q9P2N5 1060 aaKnown RBP7.91□□□□□ -1.14
SMC1A-202ENST00000375340 A2MP01023 1474 aa7.91□□□□□ -1.14
SMC1A-202ENST00000375340 G3BP1Q13283 466 aaKnown RBP eCLIP7.91□□□□□ -1.148e-6■■□□□ 11.5
SMC1A-202ENST00000375340 NUTM1Q86Y26 1132 aa7.91□□□□□ -1.14
SMC1A-202ENST00000375340 TBC1D32Q96NH3 1257 aa7.91□□□□□ -1.14
SMC1A-202ENST00000375340 TSHZ3Q63HK5 1081 aa7.9□□□□□ -1.14
SMC1A-202ENST00000375340 PCDHB15Q9Y5E8 787 aa7.9□□□□□ -1.14
SMC1A-202ENST00000375340 WAPLQ7Z5K2 1190 aa7.9□□□□□ -1.14
SMC1A-202ENST00000375340 SURF6O75683 361 aaKnown RBP7.9□□□□□ -1.14
SMC1A-202ENST00000375340 LRRCC1Q9C099 1032 aa7.9□□□□□ -1.14
SMC1A-202ENST00000375340 BLMP54132 1417 aaPredicted RBP7.9□□□□□ -1.14
SMC1A-202ENST00000375340 CT47B1P0C2W7 299 aaPredicted RBP7.9□□□□□ -1.15
SMC1A-202ENST00000375340 FAM69CQ0P6D2 419 aa7.9□□□□□ -1.15
SMC1A-202ENST00000375340 DNAJC2Q99543 621 aaKnown RBP7.9□□□□□ -1.15
SMC1A-202ENST00000375340 SPINK5Q9NQ38 1064 aaPredicted RBP7.9□□□□□ -1.15
SMC1A-202ENST00000375340 DISP1Q96F81 1524 aa7.9□□□□□ -1.15
SMC1A-202ENST00000375340 SASS6Q6UVJ0 657 aa7.9□□□□□ -1.15
SMC1A-202ENST00000375340 CEP170Q5SW79 1584 aa7.89□□□□□ -1.15
SMC1A-202ENST00000375340 NFE2L2Q16236 605 aa7.89□□□□□ -1.15
SMC1A-202ENST00000375340 CCDC30Q5VVM6 783 aa7.89□□□□□ -1.15
SMC1A-202ENST00000375340 TBC1D9Q6ZT07 1266 aa7.89□□□□□ -1.15
SMC1A-202ENST00000375340 SIL1Q9H173 461 aa7.89□□□□□ -1.15
SMC1A-202ENST00000375340 PANK2Q9BZ23 570 aa7.89□□□□□ -1.15
SMC1A-202ENST00000375340 SHANK2Q9UPX8 1470 aa7.89□□□□□ -1.15
SMC1A-202ENST00000375340 LARP6Q9BRS8 491 aaKnown RBP7.89□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms