RNA–Protein interactions for RNA: ENST00000373006.5

USP49-201, Transcript of ubiquitin specific peptidase 49, humanhuman

TSL 1 (best) BASIC

Gene USP49, Length 3,177 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP49-201ENST00000373006 NUCB1Q02818 461 aa17.13■□□□□ 0.33
USP49-201ENST00000373006 C14orf93Q9H972 538 aaKnown RBP17.13■□□□□ 0.33
USP49-201ENST00000373006 CHD1LQ86WJ1 897 aa17.13■□□□□ 0.33
USP49-201ENST00000373006 STK26Q9P289 416 aa17.13■□□□□ 0.33
USP49-201ENST00000373006 ANKRD45Q5TZF3 282 aa17.12■□□□□ 0.33
USP49-201ENST00000373006 PLEKHF1Q96S99 279 aa17.12■□□□□ 0.33
USP49-201ENST00000373006 C1orf115Q9H7X2 142 aa17.12■□□□□ 0.33
USP49-201ENST00000373006 CFAP65Q6ZU64 1925 aaKnown RBP17.12■□□□□ 0.33
USP49-201ENST00000373006 CT47B1P0C2W7 299 aaPredicted RBP17.12■□□□□ 0.33
USP49-201ENST00000373006 CD109Q6YHK3 1445 aa17.12■□□□□ 0.33
USP49-201ENST00000373006 GBP4Q96PP9 640 aa17.12■□□□□ 0.33
USP49-201ENST00000373006 SNX21Q969T3 373 aa17.11■□□□□ 0.33
USP49-201ENST00000373006 SHROOM2Q13796 1616 aa17.11■□□□□ 0.33
USP49-201ENST00000373006 RRP9O43818 475 aaKnown RBP17.1■□□□□ 0.33
USP49-201ENST00000373006 KIF2CQ99661 725 aa17.1■□□□□ 0.33
USP49-201ENST00000373006 RAB3GAP1Q15042 981 aa17.1■□□□□ 0.33
USP49-201ENST00000373006 NCOA3Q9Y6Q9 1424 aa17.09■□□□□ 0.33
USP49-201ENST00000373006 IPO8O15397 1037 aaKnown RBP17.09■□□□□ 0.33
USP49-201ENST00000373006 CYB5RLQ6IPT4 315 aa17.09■□□□□ 0.33
USP49-201ENST00000373006 EVC2Q86UK5 1308 aa17.08■□□□□ 0.33
USP49-201ENST00000373006 DEPDC5O75140 1603 aa17.08■□□□□ 0.32
USP49-201ENST00000373006 SSFA2P28290 1259 aa17.08■□□□□ 0.32
USP49-201ENST00000373006 FANCAO15360 1455 aa17.07■□□□□ 0.32
USP49-201ENST00000373006 ATP7AQ04656 1500 aa17.07■□□□□ 0.32
USP49-201ENST00000373006 ZCCHC11Q5TAX3 1644 aaKnown RBP17.07■□□□□ 0.32
USP49-201ENST00000373006 ISY1Q9ULR0 285 aaKnown RBP17.06■□□□□ 0.32
USP49-201ENST00000373006 MROH2AA6NES4 1674 aa17.06■□□□□ 0.32
USP49-201ENST00000373006 ELL2O00472 640 aaPredicted RBP17.06■□□□□ 0.32
USP49-201ENST00000373006 SRPK2P78362 688 aaKnown RBP17.06■□□□□ 0.32
USP49-201ENST00000373006 BMP2KLQ5H9B9 411 aa17.06■□□□□ 0.32
USP49-201ENST00000373006 TBC1D9Q6ZT07 1266 aa17.06■□□□□ 0.32
USP49-201ENST00000373006 GAS2L2Q8NHY3 880 aa17.06■□□□□ 0.32
USP49-201ENST00000373006 CIZ1Q9ULV3 898 aaPredicted RBP17.06■□□□□ 0.32
USP49-201ENST00000373006 ANKRD36BQ8N2N9 1353 aa17.06■□□□□ 0.32
USP49-201ENST00000373006 KIF1BO60333 1816 aa17.06■□□□□ 0.32
USP49-201ENST00000373006 VWDEQ8N2E2 1590 aa17.06■□□□□ 0.32
USP49-201ENST00000373006 KIF16BQ96L93 1317 aa17.06■□□□□ 0.32
USP49-201ENST00000373006 NRXN1Q9ULB1 1477 aa17.05■□□□□ 0.32
USP49-201ENST00000373006 K7ELQ4 463 aaPredicted RBP17.05■□□□□ 0.32
USP49-201ENST00000373006 SKOR2Q2VWA4 1001 aaPredicted RBP17.05■□□□□ 0.32
USP49-201ENST00000373006 NCBP3Q53F19 620 aaKnown RBP17.05■□□□□ 0.32
USP49-201ENST00000373006 MYO3AQ8NEV4 1616 aa17.04■□□□□ 0.32
USP49-201ENST00000373006 FBLN1P23142 703 aa17.04■□□□□ 0.32
USP49-201ENST00000373006 QRICH2Q9H0J4 1663 aa17.04■□□□□ 0.32
USP49-201ENST00000373006 DDX49Q9Y6V7 483 aaKnown RBP17.03■□□□□ 0.32
USP49-201ENST00000373006 THUMPD2Q9BTF0 503 aaKnown RBP17.03■□□□□ 0.32
USP49-201ENST00000373006 ADGRL1O94910 1474 aa17.03■□□□□ 0.32
USP49-201ENST00000373006 FAM13BQ9NYF5 915 aa17.03■□□□□ 0.32
USP49-201ENST00000373006 ZBTB7BO15156 539 aaPredicted RBP17.02■□□□□ 0.32
USP49-201ENST00000373006 NASPP49321 788 aaPredicted RBP17.02■□□□□ 0.32
USP49-201ENST00000373006 ABCC11Q96J66 1382 aa17.02■□□□□ 0.32
USP49-201ENST00000373006 NCLP19338 710 aaKnown RBP17.02■□□□□ 0.31
USP49-201ENST00000373006 A0A1W2PP64 1363 aa17.01■□□□□ 0.31
USP49-201ENST00000373006 FYB1O15117 783 aa17.01■□□□□ 0.31
USP49-201ENST00000373006 DIAPH1O60610 1272 aaKnown RBP17.01■□□□□ 0.31
USP49-201ENST00000373006 ADGRB2O60241 1585 aa17.01■□□□□ 0.31
USP49-201ENST00000373006 PPIP5K1Q6PFW1 1433 aa17.01■□□□□ 0.31
USP49-201ENST00000373006 MROH1Q8NDA8 1641 aa17.01■□□□□ 0.31
USP49-201ENST00000373006 IL16Q14005 1332 aa17■□□□□ 0.31
USP49-201ENST00000373006 NEURL4Q96JN8 1562 aa17■□□□□ 0.31
USP49-201ENST00000373006 ADGRB1O14514 1584 aa17■□□□□ 0.31
USP49-201ENST00000373006 NSD2O96028 1365 aa17■□□□□ 0.31
USP49-201ENST00000373006 EFCAB6Q5THR3 1501 aa17■□□□□ 0.31
USP49-201ENST00000373006 SIRT2Q8IXJ6 389 aa17■□□□□ 0.31
USP49-201ENST00000373006 TSPYL6Q8N831 410 aa17■□□□□ 0.31
USP49-201ENST00000373006 GOLGA6L22H0YM25 854 aa16.99■□□□□ 0.31
USP49-201ENST00000373006 IFT172Q9UG01 1749 aa16.99■□□□□ 0.31
USP49-201ENST00000373006 PRDM10Q9NQV6 1147 aa16.99■□□□□ 0.31
USP49-201ENST00000373006 BAG4O95429 457 aaKnown RBP16.99■□□□□ 0.31
USP49-201ENST00000373006 ALDH1L2Q3SY69 923 aa16.99■□□□□ 0.31
USP49-201ENST00000373006 KIAA1211Q6ZU35 1233 aa16.99■□□□□ 0.31
USP49-201ENST00000373006 SETBP1Q9Y6X0 1596 aa16.99■□□□□ 0.31
USP49-201ENST00000373006 MCTP1Q6DN14 999 aa16.98■□□□□ 0.31
USP49-201ENST00000373006 GCC1Q96CN9 775 aa16.98■□□□□ 0.31
USP49-201ENST00000373006 MINK1Q8N4C8 1332 aaPredicted RBP16.98■□□□□ 0.31
USP49-201ENST00000373006 PRKAR2BP31323 418 aa16.98■□□□□ 0.31
USP49-201ENST00000373006 PPRC1Q5VV67 1664 aaKnown RBP16.98■□□□□ 0.31
USP49-201ENST00000373006 RAPGEF3O95398 923 aa16.97■□□□□ 0.31
USP49-201ENST00000373006 HMOX1P09601 288 aa16.97■□□□□ 0.31
USP49-201ENST00000373006 ANP32BQ92688 251 aaKnown RBP16.97■□□□□ 0.31
USP49-201ENST00000373006 TULP4Q9NRJ4 1543 aa16.97■□□□□ 0.31
USP49-201ENST00000373006 CCDC173Q0VFZ6 552 aa16.97■□□□□ 0.31
USP49-201ENST00000373006 INO80Q9ULG1 1556 aaPredicted RBP16.97■□□□□ 0.31
USP49-201ENST00000373006 ADGRB3O60242 1522 aa16.97■□□□□ 0.31
USP49-201ENST00000373006 NPATQ14207 1427 aa16.96■□□□□ 0.31
USP49-201ENST00000373006 PKP1Q13835 747 aa16.96■□□□□ 0.31
USP49-201ENST00000373006 CAVIN1Q6NZI2 390 aaKnown RBP16.96■□□□□ 0.31
USP49-201ENST00000373006 PHACTR3Q96KR7 559 aa16.96■□□□□ 0.31
USP49-201ENST00000373006 VAMP4O75379 141 aa16.95■□□□□ 0.3
USP49-201ENST00000373006 PTMSP20962 102 aa16.95■□□□□ 0.3
USP49-201ENST00000373006 KLHL40Q2TBA0 621 aa16.95■□□□□ 0.3
USP49-201ENST00000373006 ATAD2Q6PL18 1390 aa16.95■□□□□ 0.3
USP49-201ENST00000373006 GSPT1P15170 499 aaKnown RBP16.95■□□□□ 0.3
USP49-201ENST00000373006 ZSCAN30Q86W11 494 aa16.95■□□□□ 0.3
USP49-201ENST00000373006 MRPL50Q8N5N7 158 aaKnown RBP16.95■□□□□ 0.3
USP49-201ENST00000373006 ZHX1Q9UKY1 873 aaPredicted RBP16.95■□□□□ 0.3
USP49-201ENST00000373006 USP32Q8NFA0 1604 aa16.95■□□□□ 0.3
USP49-201ENST00000373006 VGFO15240 615 aaPredicted RBP16.94■□□□□ 0.3
USP49-201ENST00000373006 CDC45O75419 566 aa16.94■□□□□ 0.3
USP49-201ENST00000373006 C16orf71Q8IYS4 520 aaPredicted RBP16.94■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms