RNA–Protein interactions for RNA: ENST00000372232.7

ATG4A-203, Transcript of autophagy related 4A cysteine peptidase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene ATG4A, Length 2,315 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4A-203ENST00000372232 MAP7D2Q96T17 732 aa11.35□□□□□ -0.59
ATG4A-203ENST00000372232 INO80Q9ULG1 1556 aaPredicted RBP11.35□□□□□ -0.59
ATG4A-203ENST00000372232 PTPRTO14522 1441 aa11.35□□□□□ -0.59
ATG4A-203ENST00000372232 FAM69CQ0P6D2 419 aa11.35□□□□□ -0.59
ATG4A-203ENST00000372232 TMCO4Q5TGY1 634 aa11.35□□□□□ -0.59
ATG4A-203ENST00000372232 GZF1Q9H116 711 aaPredicted RBP11.35□□□□□ -0.59
ATG4A-203ENST00000372232 DEPDC5O75140 1603 aa11.34□□□□□ -0.59
ATG4A-203ENST00000372232 LAMC1P11047 1609 aa11.34□□□□□ -0.59
ATG4A-203ENST00000372232 PRDM15P57071 1507 aaPredicted RBP11.34□□□□□ -0.59
ATG4A-203ENST00000372232 EIF2AK4Q9P2K8 1649 aaKnown RBP11.34□□□□□ -0.59
ATG4A-203ENST00000372232 E9PCH4 1651 aa11.34□□□□□ -0.59
ATG4A-203ENST00000372232 MFAP1P55081 439 aaKnown RBP11.34□□□□□ -0.59
ATG4A-203ENST00000372232 UTP14CQ5TAP6 766 aaKnown RBP11.34□□□□□ -0.59
ATG4A-203ENST00000372232 TESK2Q96S53 571 aa11.34□□□□□ -0.59
ATG4A-203ENST00000372232 TRPM2O94759 1503 aa11.33□□□□□ -0.6
ATG4A-203ENST00000372232 KIF3BO15066 747 aa11.33□□□□□ -0.6
ATG4A-203ENST00000372232 KANK1Q14678 1352 aa11.33□□□□□ -0.6
ATG4A-203ENST00000372232 KTN1Q86UP2 1357 aaKnown RBP11.33□□□□□ -0.6
ATG4A-203ENST00000372232 GLI2P10070 1586 aa11.33□□□□□ -0.6
ATG4A-203ENST00000372232 IRF5Q13568 498 aa11.32□□□□□ -0.6
ATG4A-203ENST00000372232 VWDEQ8N2E2 1590 aa11.32□□□□□ -0.6
ATG4A-203ENST00000372232 RALBP1Q15311 655 aa11.32□□□□□ -0.6
ATG4A-203ENST00000372232 PROSER2Q86WR7 435 aaPredicted RBP11.32□□□□□ -0.6
ATG4A-203ENST00000372232 POGKQ9P215 609 aa11.32□□□□□ -0.6
ATG4A-203ENST00000372232 DPYSL4O14531 572 aa11.31□□□□□ -0.6
ATG4A-203ENST00000372232 PNISRQ8TF01 805 aaKnown RBP11.31□□□□□ -0.6
ATG4A-203ENST00000372232 COL17A1Q9UMD9 1497 aaPredicted RBP11.31□□□□□ -0.6
ATG4A-203ENST00000372232 NUDCQ9Y266 331 aa11.31□□□□□ -0.6
ATG4A-203ENST00000372232 TET3O43151 1660 aa11.3□□□□□ -0.6
ATG4A-203ENST00000372232 MYBBP1AQ9BQG0 1328 aaKnown RBP11.3□□□□□ -0.6
ATG4A-203ENST00000372232 TMC1Q8TDI8 760 aa11.3□□□□□ -0.6
ATG4A-203ENST00000372232 MS4A4AQ96JQ5 239 aa11.3□□□□□ -0.6
ATG4A-203ENST00000372232 DISP3Q9P2K9 1392 aa11.3□□□□□ -0.6
ATG4A-203ENST00000372232 PER1O15534 1290 aaPredicted RBP11.3□□□□□ -0.6
ATG4A-203ENST00000372232 XRCC6P12956 609 aaKnown RBP eCLIP11.3□□□□□ -0.6
ATG4A-203ENST00000372232 FSD2A1L4K1 749 aa11.29□□□□□ -0.6
ATG4A-203ENST00000372232 AMHR2Q16671 573 aa11.29□□□□□ -0.6
ATG4A-203ENST00000372232 BRD4O60885 1362 aaPredicted RBP11.29□□□□□ -0.6
ATG4A-203ENST00000372232 ZNF518AQ6AHZ1 1483 aa11.29□□□□□ -0.6
ATG4A-203ENST00000372232 MAP3K4Q9Y6R4 1608 aa11.29□□□□□ -0.6
ATG4A-203ENST00000372232 BRD2P25440 801 aaKnown RBP11.29□□□□□ -0.6
ATG4A-203ENST00000372232 SLC4A3P48751 1232 aa11.29□□□□□ -0.6
ATG4A-203ENST00000372232 CCDC97Q96F63 343 aaPredicted RBP11.29□□□□□ -0.6
ATG4A-203ENST00000372232 SPHKAPQ2M3C7 1700 aa11.28□□□□□ -0.6
ATG4A-203ENST00000372232 CLTCL1P53675 1640 aa11.28□□□□□ -0.6
ATG4A-203ENST00000372232 RNF17Q9BXT8 1623 aaKnown RBP11.28□□□□□ -0.6
ATG4A-203ENST00000372232 ESPNB1AK53 854 aa11.28□□□□□ -0.6
ATG4A-203ENST00000372232 TMF1P82094 1093 aa11.28□□□□□ -0.6
ATG4A-203ENST00000372232 FNBP4Q8N3X1 1017 aaPredicted RBP11.28□□□□□ -0.6
ATG4A-203ENST00000372232 MROH1Q8NDA8 1641 aa11.28□□□□□ -0.6
ATG4A-203ENST00000372232 MADDQ8WXG6 1647 aa11.28□□□□□ -0.6
ATG4A-203ENST00000372232 CD109Q6YHK3 1445 aa11.28□□□□□ -0.6
ATG4A-203ENST00000372232 FECHP22830 423 aa11.27□□□□□ -0.6
ATG4A-203ENST00000372232 TMEM51Q9NW97 253 aa11.27□□□□□ -0.6
ATG4A-203ENST00000372232 PARD3Q8TEW0 1356 aa11.27□□□□□ -0.6
ATG4A-203ENST00000372232 TERF1P54274 439 aa11.27□□□□□ -0.61
ATG4A-203ENST00000372232 DMTNQ08495 405 aa11.27□□□□□ -0.61
ATG4A-203ENST00000372232 TTLL12Q14166 644 aaPredicted RBP11.27□□□□□ -0.61
ATG4A-203ENST00000372232 ZHX1Q9UKY1 873 aaPredicted RBP11.27□□□□□ -0.61
ATG4A-203ENST00000372232 MINK1Q8N4C8 1332 aaPredicted RBP11.27□□□□□ -0.61
ATG4A-203ENST00000372232 IRF6O14896 467 aa11.26□□□□□ -0.61
ATG4A-203ENST00000372232 FTSJ3Q8IY81 847 aaKnown RBP11.26□□□□□ -0.61
ATG4A-203ENST00000372232 LRPPRCP42704 1394 aaKnown RBP11.26□□□□□ -0.61
ATG4A-203ENST00000372232 PPRC1Q5VV67 1664 aaKnown RBP11.26□□□□□ -0.61
ATG4A-203ENST00000372232 KIDINS220Q9ULH0 1771 aa11.26□□□□□ -0.61
ATG4A-203ENST00000372232 CEP152O94986 1710 aa11.26□□□□□ -0.61
ATG4A-203ENST00000372232 MAP2K5Q13163 448 aa11.26□□□□□ -0.61
ATG4A-203ENST00000372232 TSPOAP1O95153 1857 aa11.25□□□□□ -0.61
ATG4A-203ENST00000372232 SOX12O15370 315 aa11.25□□□□□ -0.61
ATG4A-203ENST00000372232 NLRP13Q86W25 1043 aa11.25□□□□□ -0.61
ATG4A-203ENST00000372232 PANK3Q9H999 370 aa11.25□□□□□ -0.61
ATG4A-203ENST00000372232 GOPCQ9HD26 462 aa11.25□□□□□ -0.61
ATG4A-203ENST00000372232 NEURL4Q96JN8 1562 aa11.25□□□□□ -0.61
ATG4A-203ENST00000372232 GOLGA6L3A6NEY3 463 aa11.25□□□□□ -0.61
ATG4A-203ENST00000372232 EMILIN3Q9NT22 766 aa11.25□□□□□ -0.61
ATG4A-203ENST00000372232 POGZQ7Z3K3 1410 aa11.25□□□□□ -0.61
ATG4A-203ENST00000372232 SERPINA10Q9UK55 444 aa11.24□□□□□ -0.61
ATG4A-203ENST00000372232 SCAF11Q99590 1463 aaKnown RBP11.24□□□□□ -0.61
ATG4A-203ENST00000372232 EFCAB6Q5THR3 1501 aa11.24□□□□□ -0.61
ATG4A-203ENST00000372232 RIPK4P57078 832 aa11.24□□□□□ -0.61
ATG4A-203ENST00000372232 ERBB4Q15303 1308 aa11.23□□□□□ -0.61
ATG4A-203ENST00000372232 MLH3Q9UHC1 1453 aa11.23□□□□□ -0.61
ATG4A-203ENST00000372232 LMTK2Q8IWU2 1503 aa11.23□□□□□ -0.61
ATG4A-203ENST00000372232 KIAA1211Q6ZU35 1233 aa11.23□□□□□ -0.61
ATG4A-203ENST00000372232 MTERF4Q7Z6M4 381 aaKnown RBP11.23□□□□□ -0.61
ATG4A-203ENST00000372232 IFNL1Q8IU54 200 aa11.23□□□□□ -0.61
ATG4A-203ENST00000372232 PPP4R3BQ5MIZ7 849 aa11.23□□□□□ -0.61
ATG4A-203ENST00000372232 TEX2Q8IWB9 1127 aa11.23□□□□□ -0.61
ATG4A-203ENST00000372232 PCMTD1Q96MG8 357 aaPredicted RBP11.23□□□□□ -0.61
ATG4A-203ENST00000372232 ZNF830Q96NB3 372 aaPredicted RBP11.23□□□□□ -0.61
ATG4A-203ENST00000372232 CFAP74Q9C0B2 1584 aa11.22□□□□□ -0.61
ATG4A-203ENST00000372232 ZNF579Q8NAF0 562 aaKnown RBP11.22□□□□□ -0.61
ATG4A-203ENST00000372232 PANK2Q9BZ23 570 aa11.22□□□□□ -0.61
ATG4A-203ENST00000372232 UGGT1Q9NYU2 1555 aa11.22□□□□□ -0.61
ATG4A-203ENST00000372232 IQGAP1P46940 1657 aa11.22□□□□□ -0.61
ATG4A-203ENST00000372232 NUTM2FA1L443 756 aa11.21□□□□□ -0.61
ATG4A-203ENST00000372232 CC2D1BQ5T0F9 858 aaKnown RBP11.21□□□□□ -0.61
ATG4A-203ENST00000372232 REPIN1Q9BWE0 567 aaKnown RBP11.21□□□□□ -0.61
ATG4A-203ENST00000372232 CDCA8Q53HL2 280 aa11.2□□□□□ -0.62
ATG4A-203ENST00000372232 MYOM2P54296 1465 aa11.2□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms