RNA–Protein interactions for RNA: ENST00000346495.6

TSPAN3-202, Transcript of tetraspanin 3, humanhuman

TSL 2 BASIC

Gene TSPAN3, Length 1,647 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TSPAN3-202ENST00000346495 PMFBP1Q8TBY8 1022 aa28.58■■■□□ 2.17
TSPAN3-202ENST00000346495 RBM33Q96EV2 1170 aaKnown RBP28.58■■■□□ 2.17
TSPAN3-202ENST00000346495 STRCQ7RTU9 1775 aa28.58■■■□□ 2.17
TSPAN3-202ENST00000346495 C14orf37Q86TY3 774 aa28.58■■■□□ 2.17
TSPAN3-202ENST00000346495 COG3Q96JB2 828 aa28.58■■■□□ 2.17
TSPAN3-202ENST00000346495 SSH2Q76I76 1423 aa28.57■■■□□ 2.16
TSPAN3-202ENST00000346495 TTC21AQ8NDW8 1320 aa28.55■■■□□ 2.16
TSPAN3-202ENST00000346495 STRCP1A6NGW2 1772 aa28.55■■■□□ 2.16
TSPAN3-202ENST00000346495 MAP2P11137 1827 aaKnown RBP28.54■■■□□ 2.16
TSPAN3-202ENST00000346495 AATKQ6ZMQ8 1374 aa28.53■■■□□ 2.16
TSPAN3-202ENST00000346495 ZRANB1Q9UGI0 708 aa28.52■■■□□ 2.16
TSPAN3-202ENST00000346495 COL3A1P02461 1466 aaPredicted RBP28.52■■■□□ 2.16
TSPAN3-202ENST00000346495 NCOA3Q9Y6Q9 1424 aa28.52■■■□□ 2.16
TSPAN3-202ENST00000346495 SENP3-EIF4A1A0A087X0R7 540 aa28.51■■■□□ 2.15
TSPAN3-202ENST00000346495 SMG6Q86US8 1419 aaKnown RBP28.5■■■□□ 2.15
TSPAN3-202ENST00000346495 PNPLA6Q8IY17 1366 aa28.5■■■□□ 2.15
TSPAN3-202ENST00000346495 PHF8Q9UPP1 1060 aa28.5■■■□□ 2.15
TSPAN3-202ENST00000346495 OVOS2A0A0J9YW53 1432 aa28.5■■■□□ 2.15
TSPAN3-202ENST00000346495 OVOS2Q6IE36 1432 aa28.5■■■□□ 2.15
TSPAN3-202ENST00000346495 PDE3BQ13370 1112 aa28.48■■■□□ 2.15
TSPAN3-202ENST00000346495 POLKQ9UBT6 870 aa28.48■■■□□ 2.15
TSPAN3-202ENST00000346495 NUDCQ9Y266 331 aa28.48■■■□□ 2.15
TSPAN3-202ENST00000346495 C19orf44Q9H6X5 657 aa28.47■■■□□ 2.15
TSPAN3-202ENST00000346495 SALL2Q9Y467 1007 aaPredicted RBP28.46■■■□□ 2.15
TSPAN3-202ENST00000346495 CCDC146Q8IYE0 955 aa28.45■■■□□ 2.14
TSPAN3-202ENST00000346495 TMEM94Q12767 1356 aa28.45■■■□□ 2.14
TSPAN3-202ENST00000346495 USP31Q70CQ4 1352 aa28.44■■■□□ 2.14
TSPAN3-202ENST00000346495 CDK12Q9NYV4 1490 aaPredicted RBP28.44■■■□□ 2.14
TSPAN3-202ENST00000346495 PIK3C2AO00443 1686 aa28.43■■■□□ 2.14
TSPAN3-202ENST00000346495 NGEFQ8N5V2 710 aa28.43■■■□□ 2.14
TSPAN3-202ENST00000346495 ESCO1Q5FWF5 840 aa28.43■■■□□ 2.14
TSPAN3-202ENST00000346495 DCCP43146 1447 aa28.43■■■□□ 2.14
TSPAN3-202ENST00000346495 DIAPH1O60610 1272 aaKnown RBP28.42■■■□□ 2.14
TSPAN3-202ENST00000346495 USP54Q70EL1 1684 aa28.42■■■□□ 2.14
TSPAN3-202ENST00000346495 RUNDC1Q96C34 613 aa28.41■■■□□ 2.14
TSPAN3-202ENST00000346495 U2AF1L5P0DN76 240 aaPredicted RBP28.4■■■□□ 2.14
TSPAN3-202ENST00000346495 FBLN1P23142 703 aa28.4■■■□□ 2.14
TSPAN3-202ENST00000346495 U2AF1Q01081 240 aaKnown RBP eCLIP28.4■■■□□ 2.14
TSPAN3-202ENST00000346495 PPM1GO15355 546 aaPredicted RBP28.4■■■□□ 2.14
TSPAN3-202ENST00000346495 KIF1AQ12756 1690 aa28.39■■■□□ 2.14
TSPAN3-202ENST00000346495 APAF1O14727 1248 aa28.39■■■□□ 2.13
TSPAN3-202ENST00000346495 EMILIN1Q9Y6C2 1016 aa28.39■■■□□ 2.13
TSPAN3-202ENST00000346495 ATF3P18847 181 aa28.37■■■□□ 2.13
TSPAN3-202ENST00000346495 C1orf167Q5SNV9 1468 aa28.37■■■□□ 2.13
TSPAN3-202ENST00000346495 LRRC7Q96NW7 1537 aa28.37■■■□□ 2.13
TSPAN3-202ENST00000346495 U2SURPO15042 1029 aaKnown RBP28.36■■■□□ 2.13
TSPAN3-202ENST00000346495 NEFLP07196 543 aa28.35■■■□□ 2.13
TSPAN3-202ENST00000346495 PSME1Q06323 249 aa28.35■■■□□ 2.13
TSPAN3-202ENST00000346495 RRS1Q15050 365 aaKnown RBP28.35■■■□□ 2.13
TSPAN3-202ENST00000346495 SUPT16HQ9Y5B9 1047 aaKnown RBP28.35■■■□□ 2.13
TSPAN3-202ENST00000346495 XIRP1Q702N8 1843 aaKnown RBP28.35■■■□□ 2.13
TSPAN3-202ENST00000346495 IQSEC2Q5JU85 1478 aa28.34■■■□□ 2.13
TSPAN3-202ENST00000346495 ZNF521Q96K83 1311 aa28.34■■■□□ 2.13
TSPAN3-202ENST00000346495 MARF1Q9Y4F3 1742 aaKnown RBP28.34■■■□□ 2.13
TSPAN3-202ENST00000346495 ORAI2Q96SN7 254 aa28.33■■■□□ 2.13
TSPAN3-202ENST00000346495 MST1RQ04912 1400 aa28.33■■■□□ 2.13
TSPAN3-202ENST00000346495 PAK3O75914 559 aaPredicted RBP28.32■■■□□ 2.12
TSPAN3-202ENST00000346495 NLRP6P59044 892 aa28.32■■■□□ 2.12
TSPAN3-202ENST00000346495 PNNQ9H307 717 aaKnown RBP28.32■■■□□ 2.12
TSPAN3-202ENST00000346495 MSH6P52701 1360 aa28.32■■■□□ 2.12
TSPAN3-202ENST00000346495 ABTB2Q8N961 1025 aa28.32■■■□□ 2.12
TSPAN3-202ENST00000346495 CADPS2Q86UW7 1296 aa28.31■■■□□ 2.12
TSPAN3-202ENST00000346495 NCBP3Q53F19 620 aaKnown RBP28.3■■■□□ 2.12
TSPAN3-202ENST00000346495 DMRT2Q9Y5R5 561 aa28.3■■■□□ 2.12
TSPAN3-202ENST00000346495 IL13P35225 146 aa28.29■■■□□ 2.12
TSPAN3-202ENST00000346495 TCP11L2Q8N4U5 519 aa28.29■■■□□ 2.12
TSPAN3-202ENST00000346495 CDCA7LQ96GN5 454 aa28.29■■■□□ 2.12
TSPAN3-202ENST00000346495 GOLGA2Q08379 1002 aa28.28■■■□□ 2.12
TSPAN3-202ENST00000346495 PEAK1Q9H792 1746 aa28.28■■■□□ 2.12
TSPAN3-202ENST00000346495 ZNF335Q9H4Z2 1342 aaPredicted RBP28.27■■■□□ 2.12
TSPAN3-202ENST00000346495 PLEKHF1Q96S99 279 aa28.26■■■□□ 2.11
TSPAN3-202ENST00000346495 FOXO3O43524 673 aa28.25■■■□□ 2.11
TSPAN3-202ENST00000346495 FCHSD2O94868 740 aa28.25■■■□□ 2.11
TSPAN3-202ENST00000346495 TRPM3Q9HCF6 1732 aaPredicted RBP28.25■■■□□ 2.11
TSPAN3-202ENST00000346495 MAPK8IP3Q9UPT6 1336 aa28.24■■■□□ 2.11
TSPAN3-202ENST00000346495 SOX12O15370 315 aa28.23■■■□□ 2.11
TSPAN3-202ENST00000346495 FKBP8Q14318 412 aa28.23■■■□□ 2.11
TSPAN3-202ENST00000346495 MAP3K19Q56UN5 1328 aa28.23■■■□□ 2.11
TSPAN3-202ENST00000346495 SBNO1A3KN83 1393 aa28.23■■■□□ 2.11
TSPAN3-202ENST00000346495 CCDC27Q2M243 656 aa28.22■■■□□ 2.11
TSPAN3-202ENST00000346495 NUTM2GQ5VZR2 741 aa28.22■■■□□ 2.11
TSPAN3-202ENST00000346495 KIF24Q5T7B8 1368 aa28.21■■■□□ 2.11
TSPAN3-202ENST00000346495 FLT4P35916 1363 aa28.21■■■□□ 2.11
TSPAN3-202ENST00000346495 KRT28Q7Z3Y7 464 aa28.21■■■□□ 2.11
TSPAN3-202ENST00000346495 WWC1Q8IX03 1113 aa28.21■■■□□ 2.11
TSPAN3-202ENST00000346495 PHF23Q9BUL5 403 aaPredicted RBP28.2■■■□□ 2.1
TSPAN3-202ENST00000346495 RSPH6AQ9H0K4 717 aa28.2■■■□□ 2.1
TSPAN3-202ENST00000346495 SLFN5Q08AF3 891 aa28.19■■■□□ 2.1
TSPAN3-202ENST00000346495 RRP7AQ9Y3A4 280 aaKnown RBP28.19■■■□□ 2.1
TSPAN3-202ENST00000346495 NEFMP07197 916 aa28.18■■■□□ 2.1
TSPAN3-202ENST00000346495 EIF4A2Q14240 407 aaKnown RBP28.18■■■□□ 2.1
TSPAN3-202ENST00000346495 NEUROD2Q15784 382 aa28.18■■■□□ 2.1
TSPAN3-202ENST00000346495 AMPHP49418 695 aa28.18■■■□□ 2.1
TSPAN3-202ENST00000346495 E9PSI1 815 aa28.17■■■□□ 2.1
TSPAN3-202ENST00000346495 DUSP27Q5VZP5 1158 aa28.17■■■□□ 2.1
TSPAN3-202ENST00000346495 PRKAR2BP31323 418 aa28.16■■■□□ 2.1
TSPAN3-202ENST00000346495 TMPOP42166 694 aaKnown RBP28.16■■■□□ 2.1
TSPAN3-202ENST00000346495 XPCQ01831 940 aaPredicted RBP28.16■■■□□ 2.1
TSPAN3-202ENST00000346495 HSP90AB2PQ58FF8 381 aa28.16■■■□□ 2.1
TSPAN3-202ENST00000346495 TRMT2AQ8IZ69 625 aaKnown RBP28.16■■■□□ 2.1
Retrieved 100 of 20,778 RNA–protein pairs in 109.7 ms