RNA–Protein interactions for RNA: ENST00000332345.10

LIMS1-201, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMS1, Length 1,235 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-201ENST00000332345 PLEKHG5O94827 1062 aa19.64■□□□□ 0.73
LIMS1-201ENST00000332345 TMF1P82094 1093 aa19.64■□□□□ 0.73
LIMS1-201ENST00000332345 ILDR2Q71H61 639 aa19.64■□□□□ 0.73
LIMS1-201ENST00000332345 CABLES1Q8TDN4 633 aa19.64■□□□□ 0.73
LIMS1-201ENST00000332345 AFF2P51816 1311 aa19.63■□□□□ 0.73
LIMS1-201ENST00000332345 TMC1Q8TDI8 760 aa19.63■□□□□ 0.73
LIMS1-201ENST00000332345 CDCA8Q53HL2 280 aa19.62■□□□□ 0.73
LIMS1-201ENST00000332345 POTEAQ6S8J7 498 aa19.62■□□□□ 0.73
LIMS1-201ENST00000332345 ABTB2Q8N961 1025 aa19.62■□□□□ 0.73
LIMS1-201ENST00000332345 ALS2Q96Q42 1657 aa19.62■□□□□ 0.73
LIMS1-201ENST00000332345 EIF4G2P78344 907 aaKnown RBP eCLIP19.61■□□□□ 0.73
LIMS1-201ENST00000332345 FNBP4Q8N3X1 1017 aaPredicted RBP19.6■□□□□ 0.73
LIMS1-201ENST00000332345 HDGFL2Q7Z4V5 671 aaPredicted RBP19.59■□□□□ 0.73
LIMS1-201ENST00000332345 NLRP13Q86W25 1043 aa19.59■□□□□ 0.73
LIMS1-201ENST00000332345 SLC12A5Q9H2X9 1139 aa19.59■□□□□ 0.73
LIMS1-201ENST00000332345 USP6P35125 1406 aa19.59■□□□□ 0.73
LIMS1-201ENST00000332345 NUTM2GQ5VZR2 741 aa19.58■□□□□ 0.72
LIMS1-201ENST00000332345 QTRT2Q9H974 415 aaKnown RBP19.58■□□□□ 0.72
LIMS1-201ENST00000332345 TERF2IPQ9NYB0 399 aa19.58■□□□□ 0.72
LIMS1-201ENST00000332345 USP21Q9UK80 565 aa19.58■□□□□ 0.72
LIMS1-201ENST00000332345 MARF1Q9Y4F3 1742 aaKnown RBP19.58■□□□□ 0.72
LIMS1-201ENST00000332345 CPSF1Q10570 1443 aaKnown RBP19.57■□□□□ 0.72
LIMS1-201ENST00000332345 KTN1Q86UP2 1357 aaKnown RBP19.57■□□□□ 0.72
LIMS1-201ENST00000332345 NINLQ9Y2I6 1382 aa19.56■□□□□ 0.72
LIMS1-201ENST00000332345 RXRBP28702 533 aa19.55■□□□□ 0.72
LIMS1-201ENST00000332345 NLRP6P59044 892 aa19.55■□□□□ 0.72
LIMS1-201ENST00000332345 TTC21BQ7Z4L5 1316 aa19.54■□□□□ 0.72
LIMS1-201ENST00000332345 TTC21AQ8NDW8 1320 aa19.54■□□□□ 0.72
LIMS1-201ENST00000332345 TRPC5Q9UL62 973 aaPredicted RBP19.54■□□□□ 0.72
LIMS1-201ENST00000332345 AKAP12Q02952 1782 aa19.54■□□□□ 0.72
LIMS1-201ENST00000332345 SSH2Q76I76 1423 aa19.53■□□□□ 0.72
LIMS1-201ENST00000332345 FAM83GA6ND36 823 aa19.53■□□□□ 0.72
LIMS1-201ENST00000332345 HSPA5P11021 654 aaKnown RBP19.53■□□□□ 0.72
LIMS1-201ENST00000332345 ABCA3Q99758 1704 aa19.51■□□□□ 0.71
LIMS1-201ENST00000332345 RBM6P78332 1123 aaKnown RBP19.51■□□□□ 0.71
LIMS1-201ENST00000332345 UNC5CLQ8IV45 518 aa19.51■□□□□ 0.71
LIMS1-201ENST00000332345 GCP02774 474 aa19.5■□□□□ 0.71
LIMS1-201ENST00000332345 ZC3H6P61129 1189 aaKnown RBP19.5■□□□□ 0.71
LIMS1-201ENST00000332345 SUGP2Q8IX01 1082 aaKnown RBP eCLIP19.5■□□□□ 0.71
LIMS1-201ENST00000332345 PRDM11Q9NQV5 511 aa19.5■□□□□ 0.71
LIMS1-201ENST00000332345 USP19O94966 1318 aa19.49■□□□□ 0.71
LIMS1-201ENST00000332345 BCL9LQ86UU0 1499 aa19.48■□□□□ 0.71
LIMS1-201ENST00000332345 CD163L1Q9NR16 1453 aa19.48■□□□□ 0.71
LIMS1-201ENST00000332345 SLIT2O94813 1529 aa19.48■□□□□ 0.71
LIMS1-201ENST00000332345 A0A1W2PP64 1363 aa19.47■□□□□ 0.71
LIMS1-201ENST00000332345 SOCS7O14512 581 aa19.47■□□□□ 0.71
LIMS1-201ENST00000332345 BTG4Q9NY30 223 aa19.47■□□□□ 0.71
LIMS1-201ENST00000332345 EDC4Q6P2E9 1401 aaKnown RBP19.47■□□□□ 0.71
LIMS1-201ENST00000332345 MON2Q7Z3U7 1717 aa19.47■□□□□ 0.71
LIMS1-201ENST00000332345 CRYBG1Q9Y4K1 1723 aa19.47■□□□□ 0.71
LIMS1-201ENST00000332345 KIAA0232Q92628 1395 aa19.46■□□□□ 0.71
LIMS1-201ENST00000332345 KCNH5Q8NCM2 988 aa19.46■□□□□ 0.71
LIMS1-201ENST00000332345 PHRF1Q9P1Y6 1649 aaKnown RBP19.45■□□□□ 0.7
LIMS1-201ENST00000332345 GJD4Q96KN9 370 aaPredicted RBP19.45■□□□□ 0.7
LIMS1-201ENST00000332345 POLR3GLQ9BT43 218 aa19.45■□□□□ 0.7
LIMS1-201ENST00000332345 NWD2Q9ULI1 1742 aa19.45■□□□□ 0.7
LIMS1-201ENST00000332345 ANKRD36BQ8N2N9 1353 aa19.44■□□□□ 0.7
LIMS1-201ENST00000332345 COL14A1Q05707 1796 aaKnown RBP19.44■□□□□ 0.7
LIMS1-201ENST00000332345 ATRNO75882 1429 aa19.44■□□□□ 0.7
LIMS1-201ENST00000332345 PIK3C2AO00443 1686 aa19.44■□□□□ 0.7
LIMS1-201ENST00000332345 CHRNA2Q15822 529 aa19.43■□□□□ 0.7
LIMS1-201ENST00000332345 VPS72Q15906 364 aa19.43■□□□□ 0.7
LIMS1-201ENST00000332345 NME9Q86XW9 330 aa19.43■□□□□ 0.7
LIMS1-201ENST00000332345 CCDC9Q9Y3X0 531 aaKnown RBP19.43■□□□□ 0.7
LIMS1-201ENST00000332345 CPDO75976 1380 aa19.43■□□□□ 0.7
LIMS1-201ENST00000332345 TNKS1BP1Q9C0C2 1729 aaKnown RBP19.42■□□□□ 0.7
LIMS1-201ENST00000332345 NRKQ7Z2Y5 1582 aa19.42■□□□□ 0.7
LIMS1-201ENST00000332345 PLCH1Q4KWH8 1693 aa19.42■□□□□ 0.7
LIMS1-201ENST00000332345 USP31Q70CQ4 1352 aa19.42■□□□□ 0.7
LIMS1-201ENST00000332345 CDK12Q9NYV4 1490 aaPredicted RBP19.41■□□□□ 0.7
LIMS1-201ENST00000332345 EVA1CP58658 441 aa19.41■□□□□ 0.7
LIMS1-201ENST00000332345 ZRANB1Q9UGI0 708 aa19.4■□□□□ 0.7
LIMS1-201ENST00000332345 SLIT3O75094 1523 aa19.4■□□□□ 0.7
LIMS1-201ENST00000332345 ZBTB7CA1YPR0 619 aa19.39■□□□□ 0.69
LIMS1-201ENST00000332345 SOX12O15370 315 aa19.39■□□□□ 0.69
LIMS1-201ENST00000332345 COG3Q96JB2 828 aa19.38■□□□□ 0.69
LIMS1-201ENST00000332345 ARHGEF25Q86VW2 580 aa19.37■□□□□ 0.69
LIMS1-201ENST00000332345 STRN4Q9NRL3 753 aa19.37■□□□□ 0.69
LIMS1-201ENST00000332345 AATKQ6ZMQ8 1374 aa19.36■□□□□ 0.69
LIMS1-201ENST00000332345 C11orf95C9JLR9 678 aaPredicted RBP19.36■□□□□ 0.69
LIMS1-201ENST00000332345 FYB1O15117 783 aa19.35■□□□□ 0.69
LIMS1-201ENST00000332345 CARD14Q9BXL6 1004 aa19.35■□□□□ 0.69
LIMS1-201ENST00000332345 NRAPQ86VF7 1730 aa19.34■□□□□ 0.69
LIMS1-201ENST00000332345 SPATA31A5Q5VU36 1347 aa19.33■□□□□ 0.69
LIMS1-201ENST00000332345 SPATA31A7Q8IWB4 1347 aa19.33■□□□□ 0.69
LIMS1-201ENST00000332345 ONECUT3O60422 494 aaPredicted RBP19.33■□□□□ 0.68
LIMS1-201ENST00000332345 PIAS4Q8N2W9 510 aaPredicted RBP19.33■□□□□ 0.68
LIMS1-201ENST00000332345 MYOM1P52179 1685 aa19.33■□□□□ 0.68
LIMS1-201ENST00000332345 USP54Q70EL1 1684 aa19.33■□□□□ 0.68
LIMS1-201ENST00000332345 CAMTA1Q9Y6Y1 1673 aa19.33■□□□□ 0.68
LIMS1-201ENST00000332345 GGNBP2Q9H3C7 697 aa19.32■□□□□ 0.68
LIMS1-201ENST00000332345 RGS12O14924 1447 aa19.32■□□□□ 0.68
LIMS1-201ENST00000332345 PANK3Q9H999 370 aa19.31■□□□□ 0.68
LIMS1-201ENST00000332345 OVOS2A0A0J9YW53 1432 aa19.31■□□□□ 0.68
LIMS1-201ENST00000332345 OVOS2Q6IE36 1432 aa19.31■□□□□ 0.68
LIMS1-201ENST00000332345 GLI3P10071 1580 aa19.31■□□□□ 0.68
LIMS1-201ENST00000332345 FAM98CQ17RN3 349 aaKnown RBP19.3■□□□□ 0.68
LIMS1-201ENST00000332345 LARP1Q6PKG0 1096 aaKnown RBP19.3■□□□□ 0.68
LIMS1-201ENST00000332345 SEPT12Q8IYM1 358 aa19.3■□□□□ 0.68
LIMS1-201ENST00000332345 AXIN2Q9Y2T1 843 aa19.3■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms