RNA–Protein interactions for RNA: ENST00000331194.8

CCDC88C-201, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5 BASIC

Gene CCDC88C, Length 3,104 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-201ENST00000331194 U2AF1L5P0DN76 240 aaPredicted RBP16.74■□□□□ 0.27
CCDC88C-201ENST00000331194 U2AF1Q01081 240 aaKnown RBP eCLIP16.74■□□□□ 0.27
CCDC88C-201ENST00000331194 RSPH4AQ5TD94 716 aa16.74■□□□□ 0.27
CCDC88C-201ENST00000331194 JARID2Q92833 1246 aaPredicted RBP16.74■□□□□ 0.27
CCDC88C-201ENST00000331194 K7ELQ4 463 aaPredicted RBP16.74■□□□□ 0.27
CCDC88C-201ENST00000331194 RBM27Q9P2N5 1060 aaKnown RBP16.74■□□□□ 0.27
CCDC88C-201ENST00000331194 MADDQ8WXG6 1647 aa16.73■□□□□ 0.27
CCDC88C-201ENST00000331194 C1orf115Q9H7X2 142 aa16.73■□□□□ 0.27
CCDC88C-201ENST00000331194 KLHL40Q2TBA0 621 aa16.72■□□□□ 0.27
CCDC88C-201ENST00000331194 CHGAP10645 457 aaKnown RBP16.72■□□□□ 0.27
CCDC88C-201ENST00000331194 PRIM1P49642 420 aaKnown RBP16.72■□□□□ 0.27
CCDC88C-201ENST00000331194 NUCB1Q02818 461 aa16.72■□□□□ 0.27
CCDC88C-201ENST00000331194 ANKRD45Q5TZF3 282 aa16.72■□□□□ 0.27
CCDC88C-201ENST00000331194 ATF7IPQ6VMQ6 1270 aa16.72■□□□□ 0.27
CCDC88C-201ENST00000331194 ZHX1Q9UKY1 873 aaPredicted RBP16.72■□□□□ 0.27
CCDC88C-201ENST00000331194 DDX19BQ9UMR2 479 aa16.72■□□□□ 0.27
CCDC88C-201ENST00000331194 ERVK-7P63135 1459 aa16.71■□□□□ 0.27
CCDC88C-201ENST00000331194 ZSCAN23Q3MJ62 389 aa16.71■□□□□ 0.27
CCDC88C-201ENST00000331194 CHD1LQ86WJ1 897 aa16.71■□□□□ 0.27
CCDC88C-201ENST00000331194 ZBTB40Q9NUA8 1239 aa16.71■□□□□ 0.27
CCDC88C-201ENST00000331194 UHRF1BP1LA0JNW5 1464 aa16.71■□□□□ 0.27
CCDC88C-201ENST00000331194 GOLGA6L22H0YM25 854 aa16.71■□□□□ 0.27
CCDC88C-201ENST00000331194 TBC1D9Q6ZT07 1266 aa16.71■□□□□ 0.27
CCDC88C-201ENST00000331194 BCL11BQ9C0K0 894 aaPredicted RBP16.71■□□□□ 0.27
CCDC88C-201ENST00000331194 UNC13BO14795 1591 aa16.71■□□□□ 0.26
CCDC88C-201ENST00000331194 NSD3Q9BZ95 1437 aa16.7■□□□□ 0.26
CCDC88C-201ENST00000331194 NUTM2DQ5VT03 806 aaPredicted RBP16.7■□□□□ 0.26
CCDC88C-201ENST00000331194 MPNDQ8N594 471 aa16.7■□□□□ 0.26
CCDC88C-201ENST00000331194 ADGRL1O94910 1474 aa16.69■□□□□ 0.26
CCDC88C-201ENST00000331194 IQSEC2Q5JU85 1478 aa16.69■□□□□ 0.26
CCDC88C-201ENST00000331194 FAM69CQ0P6D2 419 aa16.69■□□□□ 0.26
CCDC88C-201ENST00000331194 NOL7Q9UMY1 257 aaKnown RBP16.69■□□□□ 0.26
CCDC88C-201ENST00000331194 CEP152O94986 1710 aa16.69■□□□□ 0.26
CCDC88C-201ENST00000331194 SHPRHQ149N8 1683 aa16.69■□□□□ 0.26
CCDC88C-201ENST00000331194 ADGRF5Q8IZF2 1346 aa16.69■□□□□ 0.26
CCDC88C-201ENST00000331194 KDM5AP29375 1690 aaKnown RBP16.68■□□□□ 0.26
CCDC88C-201ENST00000331194 TSC1Q92574 1164 aa16.68■□□□□ 0.26
CCDC88C-201ENST00000331194 IQGAP3Q86VI3 1631 aa16.68■□□□□ 0.26
CCDC88C-201ENST00000331194 CD109Q6YHK3 1445 aa16.68■□□□□ 0.26
CCDC88C-201ENST00000331194 FOXD4L5Q5VV16 416 aaPredicted RBP16.68■□□□□ 0.26
CCDC88C-201ENST00000331194 FOXD4L4Q8WXT5 416 aaPredicted RBP16.68■□□□□ 0.26
CCDC88C-201ENST00000331194 PRPF40AO75400 957 aaKnown RBP16.67■□□□□ 0.26
CCDC88C-201ENST00000331194 LMBRD1Q9NUN5 540 aa16.67■□□□□ 0.26
CCDC88C-201ENST00000331194 ATP10AO60312 1499 aa16.66■□□□□ 0.26
CCDC88C-201ENST00000331194 U2SURPO15042 1029 aaKnown RBP16.66■□□□□ 0.26
CCDC88C-201ENST00000331194 RNF214Q8ND24 703 aa16.66■□□□□ 0.26
CCDC88C-201ENST00000331194 NSFL1CQ9UNZ2 370 aaKnown RBP16.66■□□□□ 0.26
CCDC88C-201ENST00000331194 CCDC27Q2M243 656 aa16.65■□□□□ 0.26
CCDC88C-201ENST00000331194 TRAK1Q9UPV9 953 aa16.65■□□□□ 0.26
CCDC88C-201ENST00000331194 ZNF445P59923 1031 aa16.65■□□□□ 0.26
CCDC88C-201ENST00000331194 BMP2KLQ5H9B9 411 aa16.65■□□□□ 0.26
CCDC88C-201ENST00000331194 ZNF500O60304 480 aaPredicted RBP16.65■□□□□ 0.26
CCDC88C-201ENST00000331194 GPT2Q8TD30 523 aa16.65■□□□□ 0.26
CCDC88C-201ENST00000331194 PTMSP20962 102 aa16.64■□□□□ 0.25
CCDC88C-201ENST00000331194 TERF1P54274 439 aa16.63■□□□□ 0.25
CCDC88C-201ENST00000331194 ZGPATQ8N5A5 531 aaKnown RBP16.63■□□□□ 0.25
CCDC88C-201ENST00000331194 PDLIM2Q96JY6 352 aa16.63■□□□□ 0.25
CCDC88C-201ENST00000331194 TRIM35Q9UPQ4 493 aa16.63■□□□□ 0.25
CCDC88C-201ENST00000331194 MLECQ14165 292 aa16.63■□□□□ 0.25
CCDC88C-201ENST00000331194 ZKSCAN5Q9Y2L8 839 aa16.63■□□□□ 0.25
CCDC88C-201ENST00000331194 SYCE3A1L190 88 aa16.63■□□□□ 0.25
CCDC88C-201ENST00000331194 FAM177BA6PVY3 158 aa16.63■□□□□ 0.25
CCDC88C-201ENST00000331194 ABCC1P33527 1531 aa16.62■□□□□ 0.25
CCDC88C-201ENST00000331194 CFAP53Q96M91 514 aa16.62■□□□□ 0.25
CCDC88C-201ENST00000331194 KANK1Q14678 1352 aa16.61■□□□□ 0.25
CCDC88C-201ENST00000331194 MAST1Q9Y2H9 1570 aa16.61■□□□□ 0.25
CCDC88C-201ENST00000331194 TMPOP42166 694 aaKnown RBP16.61■□□□□ 0.25
CCDC88C-201ENST00000331194 PLPPR3Q6T4P5 718 aa16.61■□□□□ 0.25
CCDC88C-201ENST00000331194 CLEC17AQ6ZS10 378 aa16.61■□□□□ 0.25
CCDC88C-201ENST00000331194 MAP7D2Q96T17 732 aa16.61■□□□□ 0.25
CCDC88C-201ENST00000331194 TMEM63CQ9P1W3 806 aa16.61■□□□□ 0.25
CCDC88C-201ENST00000331194 KIF16BQ96L93 1317 aa16.61■□□□□ 0.25
CCDC88C-201ENST00000331194 IBTKQ9P2D0 1353 aaPredicted RBP16.6■□□□□ 0.25
CCDC88C-201ENST00000331194 PDIA4P13667 645 aaKnown RBP16.59■□□□□ 0.25
CCDC88C-201ENST00000331194 TMEM132EQ6IEE7 984 aa16.59■□□□□ 0.25
CCDC88C-201ENST00000331194 ZNF518AQ6AHZ1 1483 aa16.59■□□□□ 0.25
CCDC88C-201ENST00000331194 SIRT2Q8IXJ6 389 aa16.59■□□□□ 0.25
CCDC88C-201ENST00000331194 CFAP65Q6ZU64 1925 aaKnown RBP16.59■□□□□ 0.25
CCDC88C-201ENST00000331194 ZNF830Q96NB3 372 aaPredicted RBP16.59■□□□□ 0.25
CCDC88C-201ENST00000331194 PTPRTO14522 1441 aa16.58■□□□□ 0.25
CCDC88C-201ENST00000331194 DYNC1I1O14576 645 aa16.58■□□□□ 0.24
CCDC88C-201ENST00000331194 HS1BP3Q53T59 392 aa16.58■□□□□ 0.24
CCDC88C-201ENST00000331194 ZDHHC9Q9Y397 364 aa16.58■□□□□ 0.24
CCDC88C-201ENST00000331194 PPIP5K1Q6PFW1 1433 aa16.58■□□□□ 0.24
CCDC88C-201ENST00000331194 ELL2O00472 640 aaPredicted RBP16.58■□□□□ 0.24
CCDC88C-201ENST00000331194 GSPT1P15170 499 aaKnown RBP16.58■□□□□ 0.24
CCDC88C-201ENST00000331194 SPHKAPQ2M3C7 1700 aa16.58■□□□□ 0.24
CCDC88C-201ENST00000331194 SMAP1Q8IYB5 467 aaPredicted RBP16.57■□□□□ 0.24
CCDC88C-201ENST00000331194 C16orf71Q8IYS4 520 aaPredicted RBP16.57■□□□□ 0.24
CCDC88C-201ENST00000331194 BBXQ8WY36 941 aaPredicted RBP16.57■□□□□ 0.24
CCDC88C-201ENST00000331194 CLTCL1P53675 1640 aa16.57■□□□□ 0.24
CCDC88C-201ENST00000331194 CYP2E1P05181 493 aaPredicted RBP16.56■□□□□ 0.24
CCDC88C-201ENST00000331194 FOXD4L6Q3SYB3 417 aaPredicted RBP16.56■□□□□ 0.24
CCDC88C-201ENST00000331194 FOXD4L3Q6VB84 417 aaPredicted RBP16.56■□□□□ 0.24
CCDC88C-201ENST00000331194 AEBP2Q6ZN18 517 aaPredicted RBP16.56■□□□□ 0.24
CCDC88C-201ENST00000331194 SASS6Q6UVJ0 657 aa16.56■□□□□ 0.24
CCDC88C-201ENST00000331194 C17orf53Q8N3J3 647 aaPredicted RBP16.56■□□□□ 0.24
CCDC88C-201ENST00000331194 ATAD2Q6PL18 1390 aa16.56■□□□□ 0.24
CCDC88C-201ENST00000331194 ZBTB7BO15156 539 aaPredicted RBP16.56■□□□□ 0.24
CCDC88C-201ENST00000331194 TPRNQ4KMQ1 711 aa16.56■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms