RNA–Protein interactions for RNA: ENST00000331163.10

PDGFB-201, Transcript of platelet derived growth factor subunit B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PDGFB, Length 3,497 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFB-201ENST00000331163 ABCC11Q96J66 1382 aa20.61■□□□□ 0.89
PDGFB-201ENST00000331163 RTN4Q9NQC3 1192 aaKnown RBP20.61■□□□□ 0.89
PDGFB-201ENST00000331163 NLRP2Q9NX02 1062 aa20.61■□□□□ 0.89
PDGFB-201ENST00000331163 MYOM2P54296 1465 aa20.61■□□□□ 0.89
PDGFB-201ENST00000331163 TTC21BQ7Z4L5 1316 aa20.61■□□□□ 0.89
PDGFB-201ENST00000331163 SIGLEC1Q9BZZ2 1709 aa20.61■□□□□ 0.89
PDGFB-201ENST00000331163 AGLP35573 1532 aa20.6■□□□□ 0.89
PDGFB-201ENST00000331163 KRT28Q7Z3Y7 464 aa20.6■□□□□ 0.89
PDGFB-201ENST00000331163 ANKRD36BQ8N2N9 1353 aa20.6■□□□□ 0.89
PDGFB-201ENST00000331163 AEBP1Q8IUX7 1158 aa20.59■□□□□ 0.89
PDGFB-201ENST00000331163 PREX1Q8TCU6 1659 aa20.58■□□□□ 0.89
PDGFB-201ENST00000331163 POLKQ9UBT6 870 aa20.58■□□□□ 0.89
PDGFB-201ENST00000331163 RTF1Q92541 710 aaKnown RBP20.58■□□□□ 0.88
PDGFB-201ENST00000331163 MIS18AQ9NYP9 233 aa20.58■□□□□ 0.88
PDGFB-201ENST00000331163 PPP4R2Q9NY27 417 aa20.57■□□□□ 0.88
PDGFB-201ENST00000331163 NEXMIFQ5QGS0 1516 aa20.57■□□□□ 0.88
PDGFB-201ENST00000331163 PLEKHG1Q9ULL1 1385 aa20.57■□□□□ 0.88
PDGFB-201ENST00000331163 RUNDC1Q96C34 613 aa20.57■□□□□ 0.88
PDGFB-201ENST00000331163 ALKQ9UM73 1620 aa20.56■□□□□ 0.88
PDGFB-201ENST00000331163 NPM2Q86SE8 214 aaKnown RBP20.56■□□□□ 0.88
PDGFB-201ENST00000331163 PARD3Q8TEW0 1356 aa20.56■□□□□ 0.88
PDGFB-201ENST00000331163 RIMS1Q86UR5 1692 aaKnown RBP20.56■□□□□ 0.88
PDGFB-201ENST00000331163 RTL5Q5HYW3 569 aaPredicted RBP20.56■□□□□ 0.88
PDGFB-201ENST00000331163 FAM83GA6ND36 823 aa20.55■□□□□ 0.88
PDGFB-201ENST00000331163 C19orf44Q9H6X5 657 aa20.55■□□□□ 0.88
PDGFB-201ENST00000331163 ADAMTS2O95450 1211 aa20.54■□□□□ 0.88
PDGFB-201ENST00000331163 NOP58Q9Y2X3 529 aaKnown RBP20.53■□□□□ 0.88
PDGFB-201ENST00000331163 MYO5BQ9ULV0 1848 aa20.53■□□□□ 0.88
PDGFB-201ENST00000331163 NLRP1Q9C000 1473 aa20.53■□□□□ 0.88
PDGFB-201ENST00000331163 EVA1CP58658 441 aa20.53■□□□□ 0.88
PDGFB-201ENST00000331163 LRRC59Q96AG4 307 aaKnown RBP20.52■□□□□ 0.88
PDGFB-201ENST00000331163 TMEM94Q12767 1356 aa20.52■□□□□ 0.88
PDGFB-201ENST00000331163 PTPRMP28827 1452 aa20.52■□□□□ 0.88
PDGFB-201ENST00000331163 ASXL1Q8IXJ9 1541 aa20.51■□□□□ 0.87
PDGFB-201ENST00000331163 ZNF330Q9Y3S2 320 aaPredicted RBP20.51■□□□□ 0.87
PDGFB-201ENST00000331163 DMRT2Q9Y5R5 561 aa20.51■□□□□ 0.87
PDGFB-201ENST00000331163 NPHP4O75161 1426 aaPredicted RBP20.5■□□□□ 0.87
PDGFB-201ENST00000331163 MCM10Q7L590 875 aa20.5■□□□□ 0.87
PDGFB-201ENST00000331163 ANO8Q9HCE9 1232 aaPredicted RBP20.5■□□□□ 0.87
PDGFB-201ENST00000331163 PRDM11Q9NQV5 511 aa20.5■□□□□ 0.87
PDGFB-201ENST00000331163 BCAR3O75815 825 aa20.49■□□□□ 0.87
PDGFB-201ENST00000331163 FTSJ3Q8IY81 847 aaKnown RBP20.49■□□□□ 0.87
PDGFB-201ENST00000331163 PHACTR3Q96KR7 559 aa20.48■□□□□ 0.87
PDGFB-201ENST00000331163 SPINK5Q9NQ38 1064 aaPredicted RBP20.48■□□□□ 0.87
PDGFB-201ENST00000331163 ADAMTS13Q76LX8 1427 aa20.48■□□□□ 0.87
PDGFB-201ENST00000331163 CADPS2Q86UW7 1296 aa20.48■□□□□ 0.87
PDGFB-201ENST00000331163 KAT6BQ8WYB5 2073 aa20.48■□□□□ 0.87
PDGFB-201ENST00000331163 EXOC6Q8TAG9 804 aa20.48■□□□□ 0.87
PDGFB-201ENST00000331163 PTPRUQ92729 1446 aa20.47■□□□□ 0.87
PDGFB-201ENST00000331163 SMC4Q9NTJ3 1288 aa20.47■□□□□ 0.87
PDGFB-201ENST00000331163 TMEM131LA2VDJ0 1609 aa20.47■□□□□ 0.87
PDGFB-201ENST00000331163 MAP3K19Q56UN5 1328 aa20.46■□□□□ 0.87
PDGFB-201ENST00000331163 ZFYVE9O95405 1425 aa20.46■□□□□ 0.87
PDGFB-201ENST00000331163 PNNQ9H307 717 aaKnown RBP20.46■□□□□ 0.87
PDGFB-201ENST00000331163 WWC1Q8IX03 1113 aa20.45■□□□□ 0.86
PDGFB-201ENST00000331163 GOLGA6L2Q8N9W4 650 aaPredicted RBP20.45■□□□□ 0.86
PDGFB-201ENST00000331163 ANP32AP39687 249 aaKnown RBP20.44■□□□□ 0.86
PDGFB-201ENST00000331163 TMPOP42166 694 aaKnown RBP20.44■□□□□ 0.86
PDGFB-201ENST00000331163 MSH6P52701 1360 aa20.44■□□□□ 0.86
PDGFB-201ENST00000331163 NGEFQ8N5V2 710 aa20.44■□□□□ 0.86
PDGFB-201ENST00000331163 SYTL4Q96C24 671 aaPredicted RBP20.44■□□□□ 0.86
PDGFB-201ENST00000331163 EIF2S2P20042 333 aaKnown RBP20.43■□□□□ 0.86
PDGFB-201ENST00000331163 EXOSC9Q06265 439 aaKnown RBP20.43■□□□□ 0.86
PDGFB-201ENST00000331163 EIF4A2Q14240 407 aaKnown RBP20.43■□□□□ 0.86
PDGFB-201ENST00000331163 SETD1BQ9UPS6 1966 aaKnown RBP20.43■□□□□ 0.86
PDGFB-201ENST00000331163 SPATA31D1Q6ZQQ2 1576 aa20.43■□□□□ 0.86
PDGFB-201ENST00000331163 FER1L4A9Z1Z3 1794 aa20.42■□□□□ 0.86
PDGFB-201ENST00000331163 COG6Q9Y2V7 657 aa20.42■□□□□ 0.86
PDGFB-201ENST00000331163 DDX54Q8TDD1 881 aaKnown RBP20.41■□□□□ 0.86
PDGFB-201ENST00000331163 SLAIN2Q9P270 581 aa20.41■□□□□ 0.86
PDGFB-201ENST00000331163 UBAP1LF5GYI3 381 aa20.41■□□□□ 0.86
PDGFB-201ENST00000331163 GCP02774 474 aa20.41■□□□□ 0.86
PDGFB-201ENST00000331163 TOM1L2Q6ZVM7 507 aa20.41■□□□□ 0.86
PDGFB-201ENST00000331163 RGS3P49796 1198 aa20.4■□□□□ 0.86
PDGFB-201ENST00000331163 MYH16Q9H6N6 1097 aa20.4■□□□□ 0.86
PDGFB-201ENST00000331163 PANK1Q8TE04 598 aa20.4■□□□□ 0.86
PDGFB-201ENST00000331163 ZBTB47Q9UFB7 747 aaPredicted RBP20.4■□□□□ 0.86
PDGFB-201ENST00000331163 SBNO2Q9Y2G9 1366 aa20.4■□□□□ 0.86
PDGFB-201ENST00000331163 ADGRB1O14514 1584 aa20.4■□□□□ 0.86
PDGFB-201ENST00000331163 SLC4A10Q6U841 1118 aa20.4■□□□□ 0.86
PDGFB-201ENST00000331163 APBB1O00213 710 aa20.39■□□□□ 0.86
PDGFB-201ENST00000331163 CRBNQ96SW2 442 aa20.39■□□□□ 0.85
PDGFB-201ENST00000331163 C20orf194Q5TEA3 1177 aa20.39■□□□□ 0.85
PDGFB-201ENST00000331163 TULP4Q9NRJ4 1543 aa20.38■□□□□ 0.85
PDGFB-201ENST00000331163 E9PSI1 815 aa20.38■□□□□ 0.85
PDGFB-201ENST00000331163 RAPGEF4Q8WZA2 1011 aa20.38■□□□□ 0.85
PDGFB-201ENST00000331163 PLEKHG3A1L390 1219 aa20.37■□□□□ 0.85
PDGFB-201ENST00000331163 SKAP1Q86WV1 359 aa20.37■□□□□ 0.85
PDGFB-201ENST00000331163 RRP1P56182 461 aaKnown RBP20.36■□□□□ 0.85
PDGFB-201ENST00000331163 KRT24Q2M2I5 525 aa20.36■□□□□ 0.85
PDGFB-201ENST00000331163 ZBTB4Q9P1Z0 1013 aaPredicted RBP20.36■□□□□ 0.85
PDGFB-201ENST00000331163 ZC3H13Q5T200 1668 aaKnown RBP20.36■□□□□ 0.85
PDGFB-201ENST00000331163 KDM5AP29375 1690 aaKnown RBP20.36■□□□□ 0.85
PDGFB-201ENST00000331163 ITPRIPQ8IWB1 547 aa20.36■□□□□ 0.85
PDGFB-201ENST00000331163 TEFQ10587 303 aa20.36■□□□□ 0.85
PDGFB-201ENST00000331163 MPRIPQ6WCQ1 1025 aa20.35■□□□□ 0.85
PDGFB-201ENST00000331163 PDE3BQ13370 1112 aa20.35■□□□□ 0.85
PDGFB-201ENST00000331163 EYA1Q99502 592 aa20.35■□□□□ 0.85
PDGFB-201ENST00000331163 C1orf141Q5JVX7 400 aa20.35■□□□□ 0.85
PDGFB-201ENST00000331163 TSPYL4Q9UJ04 414 aa20.35■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms