RNA–Protein interactions for RNA: ENST00000316694.7

SHMT1-201, Transcript of serine hydroxymethyltransferase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHMT1, Length 2,464 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-201ENST00000316694 TBC1D32Q96NH3 1257 aa27.97■■■□□ 2.07
SHMT1-201ENST00000316694 ZMYM3Q14202 1370 aa27.96■■■□□ 2.07
SHMT1-201ENST00000316694 FBXO31Q5XUX0 539 aaPredicted RBP27.96■■■□□ 2.07
SHMT1-201ENST00000316694 CT47B1P0C2W7 299 aaPredicted RBP27.96■■■□□ 2.07
SHMT1-201ENST00000316694 TRIM35Q9UPQ4 493 aa27.96■■■□□ 2.07
SHMT1-201ENST00000316694 TRIM27P14373 513 aa27.95■■■□□ 2.06
SHMT1-201ENST00000316694 SSH1Q8WYL5 1049 aa27.95■■■□□ 2.06
SHMT1-201ENST00000316694 ITPRIPQ8IWB1 547 aa27.94■■■□□ 2.06
SHMT1-201ENST00000316694 ZFYVE9O95405 1425 aa27.93■■■□□ 2.06
SHMT1-201ENST00000316694 FYB1O15117 783 aa27.93■■■□□ 2.06
SHMT1-201ENST00000316694 PRAM1Q96QH2 718 aa27.93■■■□□ 2.06
SHMT1-201ENST00000316694 TERF2IPQ9NYB0 399 aa27.93■■■□□ 2.06
SHMT1-201ENST00000316694 CYB5RLQ6IPT4 315 aa27.92■■■□□ 2.06
SHMT1-201ENST00000316694 POGKQ9P215 609 aa27.92■■■□□ 2.06
SHMT1-201ENST00000316694 PREX1Q8TCU6 1659 aa27.91■■■□□ 2.06
SHMT1-201ENST00000316694 COL3A1P02461 1466 aaPredicted RBP27.91■■■□□ 2.06
SHMT1-201ENST00000316694 TMEM131LA2VDJ0 1609 aa27.91■■■□□ 2.06
SHMT1-201ENST00000316694 RIPK4P57078 832 aa27.9■■■□□ 2.06
SHMT1-201ENST00000316694 ATF7IPQ6VMQ6 1270 aa27.9■■■□□ 2.06
SHMT1-201ENST00000316694 TBC1D2Q9BYX2 928 aa27.9■■■□□ 2.06
SHMT1-201ENST00000316694 NOB1Q9ULX3 412 aaKnown RBP27.89■■■□□ 2.06
SHMT1-201ENST00000316694 DDX19BQ9UMR2 479 aa27.89■■■□□ 2.06
SHMT1-201ENST00000316694 ATAD2Q6PL18 1390 aa27.89■■■□□ 2.05
SHMT1-201ENST00000316694 PTPRMP28827 1452 aa27.88■■■□□ 2.05
SHMT1-201ENST00000316694 ANTXR1Q9H6X2 564 aa27.86■■■□□ 2.05
SHMT1-201ENST00000316694 DIAPH1O60610 1272 aaKnown RBP27.86■■■□□ 2.05
SHMT1-201ENST00000316694 HDAC1Q13547 482 aaPredicted RBP27.85■■■□□ 2.05
SHMT1-201ENST00000316694 YTHDC2Q9H6S0 1430 aaKnown RBP27.84■■■□□ 2.05
SHMT1-201ENST00000316694 CD163L1Q9NR16 1453 aa27.84■■■□□ 2.05
SHMT1-201ENST00000316694 IL16Q14005 1332 aa27.84■■■□□ 2.05
SHMT1-201ENST00000316694 TMEM57Q8N5G2 664 aa27.84■■■□□ 2.05
SHMT1-201ENST00000316694 SPRYD3Q8NCJ5 442 aa27.84■■■□□ 2.05
SHMT1-201ENST00000316694 MFAP1P55081 439 aaKnown RBP27.83■■■□□ 2.05
SHMT1-201ENST00000316694 HDGFL2Q7Z4V5 671 aaPredicted RBP27.83■■■□□ 2.05
SHMT1-201ENST00000316694 STAG3Q9UJ98 1225 aa27.82■■■□□ 2.04
SHMT1-201ENST00000316694 ANKRD26Q9UPS8 1709 aa27.82■■■□□ 2.04
SHMT1-201ENST00000316694 FAM69CQ0P6D2 419 aa27.8■■■□□ 2.04
SHMT1-201ENST00000316694 CDK19Q9BWU1 502 aa27.8■■■□□ 2.04
SHMT1-201ENST00000316694 C22orf23Q9BZE7 217 aa27.8■■■□□ 2.04
SHMT1-201ENST00000316694 CABP1Q9NZU7 370 aa27.8■■■□□ 2.04
SHMT1-201ENST00000316694 MED14O60244 1454 aa27.79■■■□□ 2.04
SHMT1-201ENST00000316694 PNNQ9H307 717 aaKnown RBP27.79■■■□□ 2.04
SHMT1-201ENST00000316694 KIF16BQ96L93 1317 aa27.78■■■□□ 2.04
SHMT1-201ENST00000316694 IPO8O15397 1037 aaKnown RBP27.78■■■□□ 2.04
SHMT1-201ENST00000316694 ZBTB40Q9NUA8 1239 aa27.77■■■□□ 2.04
SHMT1-201ENST00000316694 ALKQ9UM73 1620 aa27.77■■■□□ 2.04
SHMT1-201ENST00000316694 SUGP2Q8IX01 1082 aaKnown RBP eCLIP27.77■■■□□ 2.04
SHMT1-201ENST00000316694 SMC5Q8IY18 1101 aa27.77■■■□□ 2.04
SHMT1-201ENST00000316694 ANO8Q9HCE9 1232 aaPredicted RBP27.77■■■□□ 2.04
SHMT1-201ENST00000316694 FBLN1P23142 703 aa27.76■■■□□ 2.03
SHMT1-201ENST00000316694 CLTCQ00610 1675 aaKnown RBP27.76■■■□□ 2.03
SHMT1-201ENST00000316694 PNPLA6Q8IY17 1366 aa27.75■■■□□ 2.03
SHMT1-201ENST00000316694 PRKAR2BP31323 418 aa27.74■■■□□ 2.03
SHMT1-201ENST00000316694 FCHSD2O94868 740 aa27.73■■■□□ 2.03
SHMT1-201ENST00000316694 WAPLQ7Z5K2 1190 aa27.73■■■□□ 2.03
SHMT1-201ENST00000316694 TSPOAP1O95153 1857 aa27.72■■■□□ 2.03
SHMT1-201ENST00000316694 LRRC7Q96NW7 1537 aa27.72■■■□□ 2.03
SHMT1-201ENST00000316694 KIF20BQ96Q89 1820 aa27.71■■■□□ 2.03
SHMT1-201ENST00000316694 ALDH1L2Q3SY69 923 aa27.7■■■□□ 2.03
SHMT1-201ENST00000316694 LNPKQ9C0E8 428 aa27.69■■■□□ 2.02
SHMT1-201ENST00000316694 RSPH6AQ9H0K4 717 aa27.69■■■□□ 2.02
SHMT1-201ENST00000316694 ARHGEF40Q8TER5 1519 aa27.69■■■□□ 2.02
SHMT1-201ENST00000316694 MLECQ14165 292 aa27.69■■■□□ 2.02
SHMT1-201ENST00000316694 HMOX1P09601 288 aa27.68■■■□□ 2.02
SHMT1-201ENST00000316694 POLKQ9UBT6 870 aa27.68■■■□□ 2.02
SHMT1-201ENST00000316694 NUCB1Q02818 461 aa27.67■■■□□ 2.02
SHMT1-201ENST00000316694 THUMPD2Q9BTF0 503 aaKnown RBP27.67■■■□□ 2.02
SHMT1-201ENST00000316694 PHACTR3Q96KR7 559 aa27.66■■■□□ 2.02
SHMT1-201ENST00000316694 FAM135BQ49AJ0 1406 aa27.65■■■□□ 2.02
SHMT1-201ENST00000316694 CHD1LQ86WJ1 897 aa27.64■■■□□ 2.01
SHMT1-201ENST00000316694 HSCBQ8IWL3 235 aa27.64■■■□□ 2.01
SHMT1-201ENST00000316694 CHMP5Q9NZZ3 219 aa27.63■■■□□ 2.01
SHMT1-201ENST00000316694 CDC42BPGQ6DT37 1551 aa27.62■■■□□ 2.01
SHMT1-201ENST00000316694 MCM4P33991 863 aa27.62■■■□□ 2.01
SHMT1-201ENST00000316694 ARXQ96QS3 562 aa27.62■■■□□ 2.01
SHMT1-201ENST00000316694 A2ML1A8K2U0 1454 aa27.62■■■□□ 2.01
SHMT1-201ENST00000316694 NFE2L2Q16236 605 aa27.62■■■□□ 2.01
SHMT1-201ENST00000316694 C1orf115Q9H7X2 142 aa27.61■■■□□ 2.01
SHMT1-201ENST00000316694 ZBTB4Q9P1Z0 1013 aaPredicted RBP27.61■■■□□ 2.01
SHMT1-201ENST00000316694 DIP2BQ9P265 1576 aa27.61■■■□□ 2.01
SHMT1-201ENST00000316694 ELL2O00472 640 aaPredicted RBP27.61■■■□□ 2.01
SHMT1-201ENST00000316694 EMILIN1Q9Y6C2 1016 aa27.6■■■□□ 2.01
SHMT1-201ENST00000316694 TSPYL6Q8N831 410 aa27.6■■■□□ 2.01
SHMT1-201ENST00000316694 ZNF428Q96B54 188 aa27.6■■■□□ 2.01
SHMT1-201ENST00000316694 MAP2P11137 1827 aaKnown RBP27.59■■■□□ 2.01
SHMT1-201ENST00000316694 VAMP4O75379 141 aa27.59■■■□□ 2.01
SHMT1-201ENST00000316694 L1TD1Q5T7N2 865 aaKnown RBP27.59■■■□□ 2.01
SHMT1-201ENST00000316694 RIMS2Q9UQ26 1411 aa27.59■■■□□ 2.01
SHMT1-201ENST00000316694 ANKRD45Q5TZF3 282 aa27.59■■■□□ 2.01
SHMT1-201ENST00000316694 GZF1Q9H116 711 aaPredicted RBP27.58■■■□□ 2.01
SHMT1-201ENST00000316694 ZBTB7BO15156 539 aaPredicted RBP27.58■■■□□ 2.01
SHMT1-201ENST00000316694 BRPF1P55201 1214 aaPredicted RBP27.57■■■□□ 2
SHMT1-201ENST00000316694 MRPL50Q8N5N7 158 aaKnown RBP27.57■■■□□ 2
SHMT1-201ENST00000316694 ATP7BP35670 1465 aa27.56■■■□□ 2
SHMT1-201ENST00000316694 PPIP5K1Q6PFW1 1433 aa27.56■■■□□ 2
SHMT1-201ENST00000316694 CALD1Q05682 793 aaKnown RBP27.56■■■□□ 2
SHMT1-201ENST00000316694 PPP6R1Q9UPN7 881 aa27.56■■■□□ 2
SHMT1-201ENST00000316694 RBM25P49756 843 aaKnown RBP27.55■■■□□ 2
SHMT1-201ENST00000316694 GNAI1P63096 354 aa27.55■■■□□ 2
SHMT1-201ENST00000316694 NME9Q86XW9 330 aa27.55■■■□□ 2
Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms