RNA–Protein interactions for RNA: ENST00000315249.11

RFFL-201, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

APPRIS P1 TSL 2 BASIC

Gene RFFL, Length 7,293 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-201ENST00000315249 PRXQ9BXM0 1461 aa16.46■□□□□ 0.23
RFFL-201ENST00000315249 BTBD11A6QL63 1104 aa16.46■□□□□ 0.23
RFFL-201ENST00000315249 LNPKQ9C0E8 428 aa16.46■□□□□ 0.23
RFFL-201ENST00000315249 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP16.45■□□□□ 0.22
RFFL-201ENST00000315249 RNF20Q5VTR2 975 aa16.45■□□□□ 0.22
RFFL-201ENST00000315249 CCDC141Q6ZP82 1450 aa16.45■□□□□ 0.22
RFFL-201ENST00000315249 PTMSP20962 102 aa16.45■□□□□ 0.22
RFFL-201ENST00000315249 RTN4Q9NQC3 1192 aaKnown RBP16.45■□□□□ 0.22
RFFL-201ENST00000315249 PTCD1O75127 700 aaKnown RBP16.45■□□□□ 0.22
RFFL-201ENST00000315249 CHMP4CQ96CF2 233 aa16.45■□□□□ 0.22
RFFL-201ENST00000315249 CEP89Q96ST8 783 aa16.45■□□□□ 0.22
RFFL-201ENST00000315249 DNAJC2Q99543 621 aaKnown RBP16.45■□□□□ 0.22
RFFL-201ENST00000315249 URB2Q14146 1524 aaKnown RBP16.45■□□□□ 0.22
RFFL-201ENST00000315249 RALYLQ86SE5 291 aaKnown RBP16.45■□□□□ 0.22
RFFL-201ENST00000315249 TIAM1Q13009 1591 aa16.44■□□□□ 0.22
RFFL-201ENST00000315249 ZBED9Q6R2W3 1325 aa16.44■□□□□ 0.22
RFFL-201ENST00000315249 KDM4AO75164 1064 aa16.44■□□□□ 0.22
RFFL-201ENST00000315249 TBC1D2BQ9UPU7 963 aa16.44■□□□□ 0.22
RFFL-201ENST00000315249 PPP2R1AP30153 589 aa16.44■□□□□ 0.22
RFFL-201ENST00000315249 PANK1Q8TE04 598 aa16.44■□□□□ 0.22
RFFL-201ENST00000315249 UBAP1LF5GYI3 381 aa16.44■□□□□ 0.22
RFFL-201ENST00000315249 ATP2B2Q01814 1243 aa16.44■□□□□ 0.22
RFFL-201ENST00000315249 SURF6O75683 361 aaKnown RBP16.44■□□□□ 0.22
RFFL-201ENST00000315249 MPHOSPH8Q99549 860 aa16.44■□□□□ 0.22
RFFL-201ENST00000315249 REC8O95072 547 aa16.43■□□□□ 0.22
RFFL-201ENST00000315249 TWISTNBQ3B726 338 aaPredicted RBP16.43■□□□□ 0.22
RFFL-201ENST00000315249 KCNH5Q8NCM2 988 aa16.43■□□□□ 0.22
RFFL-201ENST00000315249 ANKRD30BQ9BXX2 1392 aa16.43■□□□□ 0.22
RFFL-201ENST00000315249 RBM19Q9Y4C8 960 aaKnown RBP16.43■□□□□ 0.22
RFFL-201ENST00000315249 FANCAO15360 1455 aa16.42■□□□□ 0.22
RFFL-201ENST00000315249 SLC4A2P04920 1241 aa16.42■□□□□ 0.22
RFFL-201ENST00000315249 DENND4BO75064 1496 aaPredicted RBP16.42■□□□□ 0.22
RFFL-201ENST00000315249 SIL1Q9H173 461 aa16.42■□□□□ 0.22
RFFL-201ENST00000315249 AKNAQ7Z591 1439 aa16.42■□□□□ 0.22
RFFL-201ENST00000315249 STK11IPQ8N1F8 1099 aa16.42■□□□□ 0.22
RFFL-201ENST00000315249 MPRIPQ6WCQ1 1025 aa16.41■□□□□ 0.22
RFFL-201ENST00000315249 CLASRPQ8N2M8 674 aaKnown RBP16.41■□□□□ 0.22
RFFL-201ENST00000315249 TTC39AQ5SRH9 613 aa16.41■□□□□ 0.22
RFFL-201ENST00000315249 PCF11O94913 1555 aaKnown RBP16.41■□□□□ 0.22
RFFL-201ENST00000315249 CAMSAP2Q08AD1 1489 aa16.4■□□□□ 0.22
RFFL-201ENST00000315249 USHBP1Q8N6Y0 703 aa16.4■□□□□ 0.22
RFFL-201ENST00000315249 TSR2Q969E8 191 aaKnown RBP16.4■□□□□ 0.22
RFFL-201ENST00000315249 GNL3LQ9NVN8 582 aaKnown RBP16.4■□□□□ 0.22
RFFL-201ENST00000315249 IDI1Q13907 227 aa16.4■□□□□ 0.22
RFFL-201ENST00000315249 EXOSC9Q06265 439 aaKnown RBP16.4■□□□□ 0.22
RFFL-201ENST00000315249 RRP12Q5JTH9 1297 aaKnown RBP16.4■□□□□ 0.22
RFFL-201ENST00000315249 TMOD3Q9NYL9 352 aa16.4■□□□□ 0.22
RFFL-201ENST00000315249 CCDC85AQ96PX6 553 aaPredicted RBP16.4■□□□□ 0.22
RFFL-201ENST00000315249 ZPR1O75312 459 aa16.39■□□□□ 0.21
RFFL-201ENST00000315249 FSD1Q9BTV5 496 aa16.39■□□□□ 0.21
RFFL-201ENST00000315249 STARD3NLO95772 234 aa16.39■□□□□ 0.21
RFFL-201ENST00000315249 CCDC57Q2TAC2 916 aa16.39■□□□□ 0.21
RFFL-201ENST00000315249 ATAD2Q6PL18 1390 aa16.39■□□□□ 0.21
RFFL-201ENST00000315249 GNAI3P08754 354 aa16.38■□□□□ 0.21
RFFL-201ENST00000315249 PNISRQ8TF01 805 aaKnown RBP16.38■□□□□ 0.21
RFFL-201ENST00000315249 PHF8Q9UPP1 1060 aa16.38■□□□□ 0.21
RFFL-201ENST00000315249 C1orf115Q9H7X2 142 aa16.38■□□□□ 0.21
RFFL-201ENST00000315249 KRT28Q7Z3Y7 464 aa16.38■□□□□ 0.21
RFFL-201ENST00000315249 NBPF8Q3BBV2 869 aa16.37■□□□□ 0.21
RFFL-201ENST00000315249 CCDC158Q5M9N0 1113 aa16.37■□□□□ 0.21
RFFL-201ENST00000315249 CFAP65Q6ZU64 1925 aaKnown RBP16.36■□□□□ 0.21
RFFL-201ENST00000315249 KRI1Q8N9T8 703 aaKnown RBP16.36■□□□□ 0.21
RFFL-201ENST00000315249 CNTROBQ8N137 903 aa16.36■□□□□ 0.21
RFFL-201ENST00000315249 ZSCAN29Q8IWY8 852 aaPredicted RBP16.36■□□□□ 0.21
RFFL-201ENST00000315249 MIS18AQ9NYP9 233 aa16.36■□□□□ 0.21
RFFL-201ENST00000315249 PTPN23Q9H3S7 1636 aa16.36■□□□□ 0.21
RFFL-201ENST00000315249 TOM1O60784 492 aa16.35■□□□□ 0.21
RFFL-201ENST00000315249 INTS3Q68E01 1043 aaKnown RBP16.35■□□□□ 0.21
RFFL-201ENST00000315249 SPINK5Q9NQ38 1064 aaPredicted RBP16.35■□□□□ 0.21
RFFL-201ENST00000315249 TPM2P07951 284 aa16.35■□□□□ 0.21
RFFL-201ENST00000315249 GNAT3A8MTJ3 354 aa16.34■□□□□ 0.21
RFFL-201ENST00000315249 GNAI2P04899 355 aa16.34■□□□□ 0.21
RFFL-201ENST00000315249 SLC3A2P08195 630 aaKnown RBP16.34■□□□□ 0.21
RFFL-201ENST00000315249 SAFBQ15424 915 aaKnown RBP eCLIP16.34■□□□□ 0.21
RFFL-201ENST00000315249 TSR1Q2NL82 804 aaKnown RBP16.34■□□□□ 0.21
RFFL-201ENST00000315249 PHF14O94880 888 aa16.34■□□□□ 0.21
RFFL-201ENST00000315249 ATP6V1DQ9Y5K8 247 aa16.34■□□□□ 0.21
RFFL-201ENST00000315249 NINLQ9Y2I6 1382 aa16.34■□□□□ 0.21
RFFL-201ENST00000315249 NOB1Q9ULX3 412 aaKnown RBP16.34■□□□□ 0.21
RFFL-201ENST00000315249 PCMTD1Q96MG8 357 aaPredicted RBP16.34■□□□□ 0.21
RFFL-201ENST00000315249 EXOC5O00471 708 aa16.33■□□□□ 0.21
RFFL-201ENST00000315249 ZNF219Q9P2Y4 722 aaPredicted RBP16.33■□□□□ 0.21
RFFL-201ENST00000315249 CCDC47Q96A33 483 aaKnown RBP16.33■□□□□ 0.2
RFFL-201ENST00000315249 CDCA7LQ96GN5 454 aa16.33■□□□□ 0.2
RFFL-201ENST00000315249 ZNF652Q9Y2D9 606 aa16.33■□□□□ 0.2
RFFL-201ENST00000315249 VPS37CA5D8V6 355 aaPredicted RBP16.32■□□□□ 0.2
RFFL-201ENST00000315249 LRPPRCP42704 1394 aaKnown RBP16.32■□□□□ 0.2
RFFL-201ENST00000315249 NSD3Q9BZ95 1437 aa16.32■□□□□ 0.2
RFFL-201ENST00000315249 CADPS2Q86UW7 1296 aa16.32■□□□□ 0.2
RFFL-201ENST00000315249 BRD4O60885 1362 aaPredicted RBP16.32■□□□□ 0.2
RFFL-201ENST00000315249 HSPA2P54652 639 aa16.32■□□□□ 0.2
RFFL-201ENST00000315249 SART3Q15020 963 aaKnown RBP16.32■□□□□ 0.2
RFFL-201ENST00000315249 MSH6P52701 1360 aa16.32■□□□□ 0.2
RFFL-201ENST00000315249 FAM135AQ9P2D6 1515 aa16.32■□□□□ 0.2
RFFL-201ENST00000315249 FKBP4Q02790 459 aaKnown RBP eCLIP16.31■□□□□ 0.2
RFFL-201ENST00000315249 C8orf37Q96NL8 207 aa16.31■□□□□ 0.2
RFFL-201ENST00000315249 GOLGA6L19H0YKK7 550 aa16.31■□□□□ 0.2
RFFL-201ENST00000315249 NME9Q86XW9 330 aa16.31■□□□□ 0.2
RFFL-201ENST00000315249 TPM3P06753 285 aa16.31■□□□□ 0.2
RFFL-201ENST00000315249 CHRNA2Q15822 529 aa16.3■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 42.7 ms