RNA–Protein interactions for RNA: ENST00000310301.8

VPS41-202, Transcript of VPS41, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS41, Length 5,903 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-202ENST00000310301 FOXD4L3Q6VB84 417 aaPredicted RBP10.02□□□□□ -0.81
VPS41-202ENST00000310301 C8orf37Q96NL8 207 aa10.02□□□□□ -0.81
VPS41-202ENST00000310301 XPCQ01831 940 aaPredicted RBP10.01□□□□□ -0.81
VPS41-202ENST00000310301 TAF7LQ5H9L4 462 aa10.01□□□□□ -0.81
VPS41-202ENST00000310301 ATP7AQ04656 1500 aa10.01□□□□□ -0.81
VPS41-202ENST00000310301 DIAPH1O60610 1272 aaKnown RBP10.01□□□□□ -0.81
VPS41-202ENST00000310301 USP47Q96K76 1375 aa10.01□□□□□ -0.81
VPS41-202ENST00000310301 NOM1Q5C9Z4 860 aaKnown RBP10.01□□□□□ -0.81
VPS41-202ENST00000310301 ABCA8O94911 1581 aa10.01□□□□□ -0.81
VPS41-202ENST00000310301 R3HCC1Q9Y3T6 440 aaKnown RBP10.01□□□□□ -0.81
VPS41-202ENST00000310301 BECN2A8MW95 431 aa10□□□□□ -0.81
VPS41-202ENST00000310301 SF3A1Q15459 793 aaKnown RBP10□□□□□ -0.81
VPS41-202ENST00000310301 EXOC6Q8TAG9 804 aa10□□□□□ -0.81
VPS41-202ENST00000310301 ZC3H6P61129 1189 aaKnown RBP10□□□□□ -0.81
VPS41-202ENST00000310301 TSPOAP1O95153 1857 aa9.99□□□□□ -0.81
VPS41-202ENST00000310301 CABP1Q9NZU7 370 aa9.99□□□□□ -0.81
VPS41-202ENST00000310301 RASSF8Q8NHQ8 419 aa9.99□□□□□ -0.81
VPS41-202ENST00000310301 CCDC70Q6NSX1 233 aa9.99□□□□□ -0.81
VPS41-202ENST00000310301 PANK3Q9H999 370 aa9.99□□□□□ -0.81
VPS41-202ENST00000310301 CCDC146Q8IYE0 955 aa9.99□□□□□ -0.81
VPS41-202ENST00000310301 GPATCH3Q96I76 525 aa9.99□□□□□ -0.81
VPS41-202ENST00000310301 MAP7D2Q96T17 732 aa9.99□□□□□ -0.81
VPS41-202ENST00000310301 C11orf95C9JLR9 678 aaPredicted RBP9.98□□□□□ -0.81
VPS41-202ENST00000310301 WASLO00401 505 aaPredicted RBP9.98□□□□□ -0.81
VPS41-202ENST00000310301 EXOC5O00471 708 aa9.98□□□□□ -0.81
VPS41-202ENST00000310301 ZNF772Q68DY9 489 aaPredicted RBP9.98□□□□□ -0.81
VPS41-202ENST00000310301 PES1O00541 588 aaKnown RBP9.98□□□□□ -0.81
VPS41-202ENST00000310301 SHANK2Q9UPX8 1470 aa9.98□□□□□ -0.81
VPS41-202ENST00000310301 PLIN1O60240 522 aa9.98□□□□□ -0.81
VPS41-202ENST00000310301 HMMRO75330 724 aa9.98□□□□□ -0.81
VPS41-202ENST00000310301 MTERF4Q7Z6M4 381 aaKnown RBP9.98□□□□□ -0.81
VPS41-202ENST00000310301 IL27Q8NEV9 243 aa9.98□□□□□ -0.81
VPS41-202ENST00000310301 NFKBIBQ15653 356 aa9.98□□□□□ -0.81
VPS41-202ENST00000310301 CERKQ8TCT0 537 aa9.97□□□□□ -0.81
VPS41-202ENST00000310301 MLH3Q9UHC1 1453 aa9.97□□□□□ -0.81
VPS41-202ENST00000310301 TPD52L1Q16890 204 aaPredicted RBP9.97□□□□□ -0.81
VPS41-202ENST00000310301 TSR1Q2NL82 804 aaKnown RBP9.97□□□□□ -0.81
VPS41-202ENST00000310301 RBM33Q96EV2 1170 aaKnown RBP9.97□□□□□ -0.81
VPS41-202ENST00000310301 GAS2L2Q8NHY3 880 aa9.97□□□□□ -0.81
VPS41-202ENST00000310301 DDX54Q8TDD1 881 aaKnown RBP9.97□□□□□ -0.81
VPS41-202ENST00000310301 CHMP5Q9NZZ3 219 aa9.97□□□□□ -0.81
VPS41-202ENST00000310301 BRPF3Q9ULD4 1205 aa9.97□□□□□ -0.81
VPS41-202ENST00000310301 ATP6V1DQ9Y5K8 247 aa9.97□□□□□ -0.81
VPS41-202ENST00000310301 H3BQV1 296 aa9.97□□□□□ -0.81
VPS41-202ENST00000310301 TPM2P07951 284 aa9.97□□□□□ -0.81
VPS41-202ENST00000310301 IFFO2Q5TF58 517 aa9.97□□□□□ -0.81
VPS41-202ENST00000310301 WAPLQ7Z5K2 1190 aa9.97□□□□□ -0.81
VPS41-202ENST00000310301 HOMER1Q86YM7 354 aa9.97□□□□□ -0.81
VPS41-202ENST00000310301 CEP89Q96ST8 783 aa9.97□□□□□ -0.81
VPS41-202ENST00000310301 SLAIN2Q9P270 581 aa9.97□□□□□ -0.81
VPS41-202ENST00000310301 RRP1P56182 461 aaKnown RBP9.97□□□□□ -0.81
VPS41-202ENST00000310301 CRBNQ96SW2 442 aa9.97□□□□□ -0.81
VPS41-202ENST00000310301 YEATS2Q9ULM3 1422 aa9.96□□□□□ -0.81
VPS41-202ENST00000310301 ZCCHC11Q5TAX3 1644 aaKnown RBP9.96□□□□□ -0.81
VPS41-202ENST00000310301 NEXNQ0ZGT2 675 aa9.96□□□□□ -0.81
VPS41-202ENST00000310301 DDX58O95786 925 aaKnown RBP9.95□□□□□ -0.82
VPS41-202ENST00000310301 BCL11BQ9C0K0 894 aaPredicted RBP9.95□□□□□ -0.82
VPS41-202ENST00000310301 C14orf93Q9H972 538 aaKnown RBP9.95□□□□□ -0.82
VPS41-202ENST00000310301 PRM3Q9NNZ6 103 aa9.95□□□□□ -0.82
VPS41-202ENST00000310301 TPM1P09493 284 aa9.95□□□□□ -0.82
VPS41-202ENST00000310301 KIF3AQ9Y496 699 aa9.95□□□□□ -0.82
VPS41-202ENST00000310301 NPHP4O75161 1426 aaPredicted RBP9.95□□□□□ -0.82
VPS41-202ENST00000310301 RBM42Q9BTD8 480 aaKnown RBP9.95□□□□□ -0.82
VPS41-202ENST00000310301 NOS1P29475 1434 aa9.95□□□□□ -0.82
VPS41-202ENST00000310301 GGNBP2Q9H3C7 697 aa9.95□□□□□ -0.82
VPS41-202ENST00000310301 ARGLU1Q9NWB6 273 aaPredicted RBP9.95□□□□□ -0.82
VPS41-202ENST00000310301 CCDC66A2RUB6 948 aa9.94□□□□□ -0.82
VPS41-202ENST00000310301 RBM10P98175 930 aaKnown RBP9.94□□□□□ -0.82
VPS41-202ENST00000310301 SAMD9Q5K651 1589 aa9.94□□□□□ -0.82
VPS41-202ENST00000310301 NLRP1Q9C000 1473 aa9.94□□□□□ -0.82
VPS41-202ENST00000310301 MRE11P49959 708 aa9.94□□□□□ -0.82
VPS41-202ENST00000310301 IFT57Q9NWB7 429 aa9.94□□□□□ -0.82
VPS41-202ENST00000310301 CABP4P57796 275 aa9.94□□□□□ -0.82
VPS41-202ENST00000310301 SLC4A10Q6U841 1118 aa9.94□□□□□ -0.82
VPS41-202ENST00000310301 TMEM2Q9UHN6 1383 aa9.94□□□□□ -0.82
VPS41-202ENST00000310301 CDCA7Q9BWT1 371 aaPredicted RBP9.94□□□□□ -0.82
VPS41-202ENST00000310301 NAIPQ13075 1403 aa9.93□□□□□ -0.82
VPS41-202ENST00000310301 RPRD2Q5VT52 1461 aaKnown RBP9.93□□□□□ -0.82
VPS41-202ENST00000310301 ANKRD45Q5TZF3 282 aa9.93□□□□□ -0.82
VPS41-202ENST00000310301 DIAPH3Q9NSV4 1193 aa9.93□□□□□ -0.82
VPS41-202ENST00000310301 FAM184AQ8NB25 1140 aa9.93□□□□□ -0.82
VPS41-202ENST00000310301 CCDC39Q9UFE4 941 aa9.93□□□□□ -0.82
VPS41-202ENST00000310301 FRAT2O75474 233 aaPredicted RBP9.93□□□□□ -0.82
VPS41-202ENST00000310301 GORABQ5T7V8 394 aa9.93□□□□□ -0.82
VPS41-202ENST00000310301 CWC15Q9P013 229 aaKnown RBP9.93□□□□□ -0.82
VPS41-202ENST00000310301 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP9.93□□□□□ -0.82
VPS41-202ENST00000310301 PTPRKQ15262 1439 aa9.93□□□□□ -0.82
VPS41-202ENST00000310301 RRP12Q5JTH9 1297 aaKnown RBP9.93□□□□□ -0.82
VPS41-202ENST00000310301 RILPL2Q969X0 211 aa9.93□□□□□ -0.82
VPS41-202ENST00000310301 CHMP3Q9Y3E7 222 aa9.93□□□□□ -0.82
VPS41-202ENST00000310301 MNS1Q8NEH6 495 aa9.92□□□□□ -0.82
VPS41-202ENST00000310301 MCTP1Q6DN14 999 aa9.92□□□□□ -0.82
VPS41-202ENST00000310301 BAG6P46379 1132 aa9.92□□□□□ -0.82
VPS41-202ENST00000310301 NASPP49321 788 aaPredicted RBP9.92□□□□□ -0.82
VPS41-202ENST00000310301 ERCC6L2Q5T890 1561 aa9.92□□□□□ -0.82
VPS41-202ENST00000310301 PNISRQ8TF01 805 aaKnown RBP9.92□□□□□ -0.82
VPS41-202ENST00000310301 AK7Q96M32 723 aa9.91□□□□□ -0.82
VPS41-202ENST00000310301 MYO5CQ9NQX4 1742 aa9.91□□□□□ -0.82
VPS41-202ENST00000310301 ZBED9Q6R2W3 1325 aa9.91□□□□□ -0.82
VPS41-202ENST00000310301 ACBD3Q9H3P7 528 aa9.91□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 48.2 ms