RNA–Protein interactions for RNA: ENST00000297979.9

C9orf3-202, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 1 (best) BASIC

Gene C9orf3, Length 2,820 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-202ENST00000297979 SUGP2Q8IX01 1082 aaKnown RBP eCLIP18.91■□□□□ 0.622e-6■□□□□ 9.9
C9orf3-202ENST00000297979 CCDC146Q8IYE0 955 aa18.89■□□□□ 0.61
C9orf3-202ENST00000297979 ZNF692Q9BU19 519 aaPredicted RBP18.89■□□□□ 0.61
C9orf3-202ENST00000297979 NPHP4O75161 1426 aaPredicted RBP18.89■□□□□ 0.61
C9orf3-202ENST00000297979 NRKQ7Z2Y5 1582 aa18.87■□□□□ 0.61
C9orf3-202ENST00000297979 NKTRP30414 1462 aaKnown RBP18.87■□□□□ 0.61
C9orf3-202ENST00000297979 PLEKHG3A1L390 1219 aa18.87■□□□□ 0.61
C9orf3-202ENST00000297979 COL3A1P02461 1466 aaPredicted RBP18.86■□□□□ 0.61
C9orf3-202ENST00000297979 NUTM2FA1L443 756 aa18.86■□□□□ 0.61
C9orf3-202ENST00000297979 NME9Q86XW9 330 aa18.85■□□□□ 0.61
C9orf3-202ENST00000297979 ACEP12821 1306 aa18.84■□□□□ 0.61
C9orf3-202ENST00000297979 APAF1O14727 1248 aa18.84■□□□□ 0.61
C9orf3-202ENST00000297979 CDCA7LQ96GN5 454 aa18.84■□□□□ 0.61
C9orf3-202ENST00000297979 ZNF521Q96K83 1311 aa18.84■□□□□ 0.61
C9orf3-202ENST00000297979 FMN2Q9NZ56 1722 aa18.84■□□□□ 0.61
C9orf3-202ENST00000297979 ANKARQ7Z5J8 1434 aa18.83■□□□□ 0.61
C9orf3-202ENST00000297979 NGEFQ8N5V2 710 aa18.83■□□□□ 0.61
C9orf3-202ENST00000297979 NALCNQ8IZF0 1738 aa18.83■□□□□ 0.6
C9orf3-202ENST00000297979 USP6P35125 1406 aa18.83■□□□□ 0.6
C9orf3-202ENST00000297979 RGPD8O14715 1765 aaPredicted RBP18.83■□□□□ 0.6
C9orf3-202ENST00000297979 IRX6P78412 446 aaPredicted RBP18.82■□□□□ 0.6
C9orf3-202ENST00000297979 RNF123Q5XPI4 1314 aa18.82■□□□□ 0.6
C9orf3-202ENST00000297979 PNPLA6Q8IY17 1366 aa18.82■□□□□ 0.6
C9orf3-202ENST00000297979 RUNDC1Q96C34 613 aa18.81■□□□□ 0.6
C9orf3-202ENST00000297979 COG3Q96JB2 828 aa18.81■□□□□ 0.6
C9orf3-202ENST00000297979 ERICH6BQ5W0A0 696 aa18.81■□□□□ 0.6
C9orf3-202ENST00000297979 IQSEC2Q5JU85 1478 aa18.8■□□□□ 0.6
C9orf3-202ENST00000297979 MAP2P11137 1827 aaKnown RBP18.8■□□□□ 0.6
C9orf3-202ENST00000297979 TTC21BQ7Z4L5 1316 aa18.8■□□□□ 0.6
C9orf3-202ENST00000297979 ANO8Q9HCE9 1232 aaPredicted RBP18.8■□□□□ 0.6
C9orf3-202ENST00000297979 AATKQ6ZMQ8 1374 aa18.8■□□□□ 0.6
C9orf3-202ENST00000297979 U2AF1L5P0DN76 240 aaPredicted RBP18.79■□□□□ 0.6
C9orf3-202ENST00000297979 U2AF1Q01081 240 aaKnown RBP eCLIP18.79■□□□□ 0.61e-6■■■■□ 22.3
C9orf3-202ENST00000297979 ZRANB1Q9UGI0 708 aa18.79■□□□□ 0.6
C9orf3-202ENST00000297979 NWD1Q149M9 1564 aa18.79■□□□□ 0.6
C9orf3-202ENST00000297979 GOLGA2Q08379 1002 aa18.79■□□□□ 0.6
C9orf3-202ENST00000297979 POLKQ9UBT6 870 aa18.78■□□□□ 0.6
C9orf3-202ENST00000297979 AEBP2Q6ZN18 517 aaPredicted RBP18.78■□□□□ 0.6
C9orf3-202ENST00000297979 SSH2Q76I76 1423 aa18.77■□□□□ 0.6
C9orf3-202ENST00000297979 RCAN3Q9UKA8 241 aa18.77■□□□□ 0.6
C9orf3-202ENST00000297979 DIAPH1O60610 1272 aaKnown RBP18.77■□□□□ 0.59
C9orf3-202ENST00000297979 PMFBP1Q8TBY8 1022 aa18.77■□□□□ 0.59
C9orf3-202ENST00000297979 ADGRL3Q9HAR2 1447 aa18.77■□□□□ 0.59
C9orf3-202ENST00000297979 CDK12Q9NYV4 1490 aaPredicted RBP18.76■□□□□ 0.59
C9orf3-202ENST00000297979 OVOS2A0A0J9YW53 1432 aa18.76■□□□□ 0.59
C9orf3-202ENST00000297979 OVOS2Q6IE36 1432 aa18.76■□□□□ 0.59
C9orf3-202ENST00000297979 U2SURPO15042 1029 aaKnown RBP18.75■□□□□ 0.59
C9orf3-202ENST00000297979 NGDNQ8NEJ9 315 aaKnown RBP18.75■□□□□ 0.59
C9orf3-202ENST00000297979 TTC21AQ8NDW8 1320 aa18.75■□□□□ 0.59
C9orf3-202ENST00000297979 FBLN1P23142 703 aa18.75■□□□□ 0.59
C9orf3-202ENST00000297979 TCP11L2Q8N4U5 519 aa18.74■□□□□ 0.59
C9orf3-202ENST00000297979 PPM1GO15355 546 aaPredicted RBP18.74■□□□□ 0.59
C9orf3-202ENST00000297979 DUSP27Q5VZP5 1158 aa18.74■□□□□ 0.59
C9orf3-202ENST00000297979 SLFN5Q08AF3 891 aa18.73■□□□□ 0.59
C9orf3-202ENST00000297979 EMILIN1Q9Y6C2 1016 aa18.73■□□□□ 0.59
C9orf3-202ENST00000297979 WWC1Q8IX03 1113 aa18.72■□□□□ 0.59
C9orf3-202ENST00000297979 RBM33Q96EV2 1170 aaKnown RBP18.71■□□□□ 0.59
C9orf3-202ENST00000297979 TRMT2AQ8IZ69 625 aaKnown RBP18.71■□□□□ 0.59
C9orf3-202ENST00000297979 E9PSI1 815 aa18.7■□□□□ 0.58
C9orf3-202ENST00000297979 RRP1P56182 461 aaKnown RBP18.7■□□□□ 0.58
C9orf3-202ENST00000297979 RRP7AQ9Y3A4 280 aaKnown RBP18.7■□□□□ 0.58
C9orf3-202ENST00000297979 USP31Q70CQ4 1352 aa18.7■□□□□ 0.58
C9orf3-202ENST00000297979 PLEKHF1Q96S99 279 aa18.7■□□□□ 0.58
C9orf3-202ENST00000297979 RRS1Q15050 365 aaKnown RBP18.69■□□□□ 0.58
C9orf3-202ENST00000297979 CCDC27Q2M243 656 aa18.69■□□□□ 0.58
C9orf3-202ENST00000297979 PHF23Q9BUL5 403 aaPredicted RBP18.69■□□□□ 0.58
C9orf3-202ENST00000297979 PNNQ9H307 717 aaKnown RBP18.69■□□□□ 0.58
C9orf3-202ENST00000297979 NEUROD2Q15784 382 aa18.69■□□□□ 0.58
C9orf3-202ENST00000297979 PPP4R2Q9NY27 417 aa18.69■□□□□ 0.58
C9orf3-202ENST00000297979 PIK3C2AO00443 1686 aa18.69■□□□□ 0.58
C9orf3-202ENST00000297979 MAPK8IP3Q9UPT6 1336 aa18.68■□□□□ 0.58
C9orf3-202ENST00000297979 C14orf37Q86TY3 774 aa18.68■□□□□ 0.58
C9orf3-202ENST00000297979 SPINK5Q9NQ38 1064 aaPredicted RBP18.68■□□□□ 0.58
C9orf3-202ENST00000297979 LRRC7Q96NW7 1537 aa18.67■□□□□ 0.58
C9orf3-202ENST00000297979 DMRT2Q9Y5R5 561 aa18.67■□□□□ 0.58
C9orf3-202ENST00000297979 PHF8Q9UPP1 1060 aa18.67■□□□□ 0.58
C9orf3-202ENST00000297979 FCHSD2O94868 740 aa18.66■□□□□ 0.58
C9orf3-202ENST00000297979 IL13P35225 146 aa18.66■□□□□ 0.58
C9orf3-202ENST00000297979 WDR63Q8IWG1 891 aa18.66■□□□□ 0.58
C9orf3-202ENST00000297979 KDM4FA0A1W2PPD8 638 aa18.65■□□□□ 0.58
C9orf3-202ENST00000297979 USP54Q70EL1 1684 aa18.65■□□□□ 0.58
C9orf3-202ENST00000297979 PROSER2Q86WR7 435 aaPredicted RBP18.65■□□□□ 0.58
C9orf3-202ENST00000297979 ANP32EQ9BTT0 268 aa18.65■□□□□ 0.58
C9orf3-202ENST00000297979 RSPH6AQ9H0K4 717 aa18.64■□□□□ 0.57
C9orf3-202ENST00000297979 TMPOP42166 694 aaKnown RBP18.64■□□□□ 0.57
C9orf3-202ENST00000297979 PKNOX2Q96KN3 472 aa18.64■□□□□ 0.57
C9orf3-202ENST00000297979 PEAK1Q9H792 1746 aa18.63■□□□□ 0.57
C9orf3-202ENST00000297979 HSPA2P54652 639 aa18.63■□□□□ 0.57
C9orf3-202ENST00000297979 MARF1Q9Y4F3 1742 aaKnown RBP18.62■□□□□ 0.57
C9orf3-202ENST00000297979 LMTK3Q96Q04 1460 aa18.61■□□□□ 0.57
C9orf3-202ENST00000297979 PRKAR2BP31323 418 aa18.61■□□□□ 0.57
C9orf3-202ENST00000297979 ESCO1Q5FWF5 840 aa18.61■□□□□ 0.57
C9orf3-202ENST00000297979 STRCP1A6NGW2 1772 aa18.61■□□□□ 0.57
C9orf3-202ENST00000297979 NEFMP07197 916 aa18.61■□□□□ 0.57
C9orf3-202ENST00000297979 NLRP6P59044 892 aa18.6■□□□□ 0.57
C9orf3-202ENST00000297979 HMOX1P09601 288 aa18.59■□□□□ 0.57
C9orf3-202ENST00000297979 SOX12O15370 315 aa18.59■□□□□ 0.57
C9orf3-202ENST00000297979 TULP1O00294 542 aaPredicted RBP18.59■□□□□ 0.57
C9orf3-202ENST00000297979 PAK3O75914 559 aaPredicted RBP18.59■□□□□ 0.57
C9orf3-202ENST00000297979 ABTB2Q8N961 1025 aa18.58■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 9.6 ms