RNA–Protein interactions for RNA: ENST00000297265.4

CHMP4C-201, Transcript of charged multivesicular body protein 4C, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CHMP4C, Length 1,866 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4C-201ENST00000297265 PPP4R2Q9NY27 417 aa17.97■□□□□ 0.47
CHMP4C-201ENST00000297265 IQSEC2Q5JU85 1478 aa17.97■□□□□ 0.47
CHMP4C-201ENST00000297265 DMRT2Q9Y5R5 561 aa17.97■□□□□ 0.47
CHMP4C-201ENST00000297265 RUNDC1Q96C34 613 aa17.96■□□□□ 0.47
CHMP4C-201ENST00000297265 ZRANB1Q9UGI0 708 aa17.96■□□□□ 0.47
CHMP4C-201ENST00000297265 PLEKHG3A1L390 1219 aa17.95■□□□□ 0.46
CHMP4C-201ENST00000297265 NME9Q86XW9 330 aa17.95■□□□□ 0.46
CHMP4C-201ENST00000297265 NGEFQ8N5V2 710 aa17.95■□□□□ 0.46
CHMP4C-201ENST00000297265 PHF23Q9BUL5 403 aaPredicted RBP17.95■□□□□ 0.46
CHMP4C-201ENST00000297265 NKTRP30414 1462 aaKnown RBP17.95■□□□□ 0.46
CHMP4C-201ENST00000297265 PIK3R4Q99570 1358 aa17.95■□□□□ 0.46
CHMP4C-201ENST00000297265 RRP1P56182 461 aaKnown RBP17.95■□□□□ 0.46
CHMP4C-201ENST00000297265 MAP2P11137 1827 aaKnown RBP17.94■□□□□ 0.46
CHMP4C-201ENST00000297265 KCNA6P17658 529 aa17.94■□□□□ 0.46
CHMP4C-201ENST00000297265 ZNF692Q9BU19 519 aaPredicted RBP17.94■□□□□ 0.46
CHMP4C-201ENST00000297265 POLKQ9UBT6 870 aa17.94■□□□□ 0.46
CHMP4C-201ENST00000297265 ITSN1Q15811 1721 aa17.94■□□□□ 0.46
CHMP4C-201ENST00000297265 ANKLE2Q86XL3 938 aa17.93■□□□□ 0.46
CHMP4C-201ENST00000297265 WWC1Q8IX03 1113 aa17.93■□□□□ 0.46
CHMP4C-201ENST00000297265 TCP11L2Q8N4U5 519 aa17.93■□□□□ 0.46
CHMP4C-201ENST00000297265 NUTM2FA1L443 756 aa17.92■□□□□ 0.46
CHMP4C-201ENST00000297265 NRKQ7Z2Y5 1582 aa17.92■□□□□ 0.46
CHMP4C-201ENST00000297265 PLEKHF1Q96S99 279 aa17.92■□□□□ 0.46
CHMP4C-201ENST00000297265 ACEP12821 1306 aa17.92■□□□□ 0.46
CHMP4C-201ENST00000297265 CHD2O14647 1828 aaKnown RBP17.91■□□□□ 0.46
CHMP4C-201ENST00000297265 U2AF1L5P0DN76 240 aaPredicted RBP17.91■□□□□ 0.46
CHMP4C-201ENST00000297265 U2AF1Q01081 240 aaKnown RBP eCLIP17.91■□□□□ 0.46
CHMP4C-201ENST00000297265 RGPD8O14715 1765 aaPredicted RBP17.91■□□□□ 0.46
CHMP4C-201ENST00000297265 SSH2Q76I76 1423 aa17.9■□□□□ 0.46
CHMP4C-201ENST00000297265 B4GALNT3Q6L9W6 998 aa17.89■□□□□ 0.45
CHMP4C-201ENST00000297265 RRP7AQ9Y3A4 280 aaKnown RBP17.89■□□□□ 0.45
CHMP4C-201ENST00000297265 AATKQ6ZMQ8 1374 aa17.89■□□□□ 0.45
CHMP4C-201ENST00000297265 NCBP3Q53F19 620 aaKnown RBP17.88■□□□□ 0.45
CHMP4C-201ENST00000297265 USP6P35125 1406 aa17.88■□□□□ 0.45
CHMP4C-201ENST00000297265 CCDC27Q2M243 656 aa17.88■□□□□ 0.45
CHMP4C-201ENST00000297265 TTC21BQ7Z4L5 1316 aa17.88■□□□□ 0.45
CHMP4C-201ENST00000297265 E9PSI1 815 aa17.87■□□□□ 0.45
CHMP4C-201ENST00000297265 DIAPH1O60610 1272 aaKnown RBP17.87■□□□□ 0.45
CHMP4C-201ENST00000297265 EMILIN1Q9Y6C2 1016 aa17.87■□□□□ 0.45
CHMP4C-201ENST00000297265 NEUROD2Q15784 382 aa17.86■□□□□ 0.45
CHMP4C-201ENST00000297265 PELP1Q8IZL8 1130 aaKnown RBP17.86■□□□□ 0.45
CHMP4C-201ENST00000297265 PLIN1O60240 522 aa17.86■□□□□ 0.45
CHMP4C-201ENST00000297265 U2SURPO15042 1029 aaKnown RBP17.85■□□□□ 0.45
CHMP4C-201ENST00000297265 COG3Q96JB2 828 aa17.85■□□□□ 0.45
CHMP4C-201ENST00000297265 TSHZ2Q9NRE2 1034 aa17.84■□□□□ 0.45
CHMP4C-201ENST00000297265 OVOS2A0A0J9YW53 1432 aa17.84■□□□□ 0.45
CHMP4C-201ENST00000297265 OVOS2Q6IE36 1432 aa17.84■□□□□ 0.45
CHMP4C-201ENST00000297265 PMFBP1Q8TBY8 1022 aa17.84■□□□□ 0.45
CHMP4C-201ENST00000297265 FMN2Q9NZ56 1722 aa17.83■□□□□ 0.45
CHMP4C-201ENST00000297265 WDR63Q8IWG1 891 aa17.83■□□□□ 0.44
CHMP4C-201ENST00000297265 EXOC6Q8TAG9 804 aa17.83■□□□□ 0.44
CHMP4C-201ENST00000297265 PPM1GO15355 546 aaPredicted RBP17.82■□□□□ 0.44
CHMP4C-201ENST00000297265 IL13P35225 146 aa17.82■□□□□ 0.44
CHMP4C-201ENST00000297265 RRS1Q15050 365 aaKnown RBP17.82■□□□□ 0.44
CHMP4C-201ENST00000297265 CDK12Q9NYV4 1490 aaPredicted RBP17.82■□□□□ 0.44
CHMP4C-201ENST00000297265 NALCNQ8IZF0 1738 aa17.82■□□□□ 0.44
CHMP4C-201ENST00000297265 NPHP4O75161 1426 aaPredicted RBP17.81■□□□□ 0.44
CHMP4C-201ENST00000297265 ANKARQ7Z5J8 1434 aa17.81■□□□□ 0.44
CHMP4C-201ENST00000297265 TMPOP42166 694 aaKnown RBP17.81■□□□□ 0.44
CHMP4C-201ENST00000297265 FCHSD2O94868 740 aa17.8■□□□□ 0.44
CHMP4C-201ENST00000297265 RSPH6AQ9H0K4 717 aa17.8■□□□□ 0.44
CHMP4C-201ENST00000297265 TRIM35Q9UPQ4 493 aa17.8■□□□□ 0.44
CHMP4C-201ENST00000297265 C20orf194Q5TEA3 1177 aa17.8■□□□□ 0.44
CHMP4C-201ENST00000297265 USP31Q70CQ4 1352 aa17.79■□□□□ 0.44
CHMP4C-201ENST00000297265 LRRC7Q96NW7 1537 aa17.79■□□□□ 0.44
CHMP4C-201ENST00000297265 RBM33Q96EV2 1170 aaKnown RBP17.79■□□□□ 0.44
CHMP4C-201ENST00000297265 TTC21AQ8NDW8 1320 aa17.77■□□□□ 0.44
CHMP4C-201ENST00000297265 NGDNQ8NEJ9 315 aaKnown RBP17.76■□□□□ 0.43
CHMP4C-201ENST00000297265 PEAK1Q9H792 1746 aa17.76■□□□□ 0.43
CHMP4C-201ENST00000297265 BCAR3O75815 825 aa17.75■□□□□ 0.43
CHMP4C-201ENST00000297265 CCDC136Q96JN2 1154 aa17.75■□□□□ 0.43
CHMP4C-201ENST00000297265 PHACTR3Q96KR7 559 aa17.75■□□□□ 0.43
CHMP4C-201ENST00000297265 PIK3C2AO00443 1686 aa17.75■□□□□ 0.43
CHMP4C-201ENST00000297265 PRKAR2BP31323 418 aa17.74■□□□□ 0.43
CHMP4C-201ENST00000297265 CRBNQ96SW2 442 aa17.74■□□□□ 0.43
CHMP4C-201ENST00000297265 ADGRL3Q9HAR2 1447 aa17.74■□□□□ 0.43
CHMP4C-201ENST00000297265 HMOX1P09601 288 aa17.73■□□□□ 0.43
CHMP4C-201ENST00000297265 PNNQ9H307 717 aaKnown RBP17.73■□□□□ 0.43
CHMP4C-201ENST00000297265 MAPK8IP3Q9UPT6 1336 aa17.73■□□□□ 0.43
CHMP4C-201ENST00000297265 MARF1Q9Y4F3 1742 aaKnown RBP17.73■□□□□ 0.43
CHMP4C-201ENST00000297265 NWD1Q149M9 1564 aa17.73■□□□□ 0.43
CHMP4C-201ENST00000297265 RIPK4P57078 832 aa17.73■□□□□ 0.43
CHMP4C-201ENST00000297265 EIF4A2Q14240 407 aaKnown RBP17.71■□□□□ 0.43
CHMP4C-201ENST00000297265 HSP90AB2PQ58FF8 381 aa17.7■□□□□ 0.42
CHMP4C-201ENST00000297265 RARSP54136 660 aaKnown RBP17.69■□□□□ 0.42
CHMP4C-201ENST00000297265 IL16Q14005 1332 aa17.69■□□□□ 0.42
CHMP4C-201ENST00000297265 USP54Q70EL1 1684 aa17.69■□□□□ 0.42
CHMP4C-201ENST00000297265 RGPD1P0DJD0 1748 aa17.69■□□□□ 0.42
CHMP4C-201ENST00000297265 MAP3K19Q56UN5 1328 aa17.69■□□□□ 0.42
CHMP4C-201ENST00000297265 MYH16Q9H6N6 1097 aa17.69■□□□□ 0.42
CHMP4C-201ENST00000297265 PHF8Q9UPP1 1060 aa17.69■□□□□ 0.42
CHMP4C-201ENST00000297265 FANCIQ9NVI1 1328 aa17.68■□□□□ 0.42
CHMP4C-201ENST00000297265 NFE2L2Q16236 605 aa17.67■□□□□ 0.42
CHMP4C-201ENST00000297265 TSR2Q969E8 191 aaKnown RBP17.67■□□□□ 0.42
CHMP4C-201ENST00000297265 GOLGA6L2Q8N9W4 650 aaPredicted RBP17.67■□□□□ 0.42
CHMP4C-201ENST00000297265 DLG5Q8TDM6 1919 aa17.66■□□□□ 0.42
CHMP4C-201ENST00000297265 NLRP6P59044 892 aa17.66■□□□□ 0.42
CHMP4C-201ENST00000297265 AEBP1Q8IUX7 1158 aa17.66■□□□□ 0.42
CHMP4C-201ENST00000297265 SOX12O15370 315 aa17.65■□□□□ 0.42
CHMP4C-201ENST00000297265 STRCP1A6NGW2 1772 aa17.64■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms