RNA–Protein interactions for RNA: ENST00000296098.4

TRIM54-201, Transcript of tripartite motif containing 54, humanhuman

TSL 1 (best) BASIC

Gene TRIM54, Length 2,027 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-201ENST00000296098 TXNDC2Q86VQ3 553 aa31.08■■■□□ 2.57
TRIM54-201ENST00000296098 PLEKHF1Q96S99 279 aa31.08■■■□□ 2.57
TRIM54-201ENST00000296098 PDE3AQ14432 1141 aa31.08■■■□□ 2.57
TRIM54-201ENST00000296098 SUGP2Q8IX01 1082 aaKnown RBP eCLIP31.07■■■□□ 2.56
TRIM54-201ENST00000296098 MYH16Q9H6N6 1097 aa31.07■■■□□ 2.56
TRIM54-201ENST00000296098 ANP32AP39687 249 aaKnown RBP31.07■■■□□ 2.56
TRIM54-201ENST00000296098 CANXP27824 592 aaKnown RBP31.06■■■□□ 2.56
TRIM54-201ENST00000296098 MON2Q7Z3U7 1717 aa31.06■■■□□ 2.56
TRIM54-201ENST00000296098 MAPK8IP3Q9UPT6 1336 aa31.06■■■□□ 2.56
TRIM54-201ENST00000296098 DIAPH1O60610 1272 aaKnown RBP31.05■■■□□ 2.56
TRIM54-201ENST00000296098 RARSP54136 660 aaKnown RBP31.04■■■□□ 2.56
TRIM54-201ENST00000296098 ITSN1Q15811 1721 aa31.04■■■□□ 2.56
TRIM54-201ENST00000296098 PDE4AP27815 886 aa31.03■■■□□ 2.56
TRIM54-201ENST00000296098 ADAMTS13Q76LX8 1427 aa31.03■■■□□ 2.56
TRIM54-201ENST00000296098 AKAP12Q02952 1782 aa31.02■■■□□ 2.56
TRIM54-201ENST00000296098 TMPOP42166 694 aaKnown RBP31.01■■■□□ 2.55
TRIM54-201ENST00000296098 BACH2Q9BYV9 841 aa31■■■□□ 2.55
TRIM54-201ENST00000296098 PLEKHG1Q9ULL1 1385 aa31■■■□□ 2.55
TRIM54-201ENST00000296098 NUDT16Q96DE0 195 aaKnown RBP31■■■□□ 2.55
TRIM54-201ENST00000296098 PNNQ9H307 717 aaKnown RBP31■■■□□ 2.55
TRIM54-201ENST00000296098 LRRC7Q96NW7 1537 aa31■■■□□ 2.55
TRIM54-201ENST00000296098 MAP2P11137 1827 aaKnown RBP30.99■■■□□ 2.55
TRIM54-201ENST00000296098 SKAP1Q86WV1 359 aa30.98■■■□□ 2.55
TRIM54-201ENST00000296098 C3P01024 1663 aa30.98■■■□□ 2.55
TRIM54-201ENST00000296098 ROBO2Q9HCK4 1378 aa30.97■■■□□ 2.55
TRIM54-201ENST00000296098 POLKQ9UBT6 870 aa30.97■■■□□ 2.55
TRIM54-201ENST00000296098 FRAT1Q92837 279 aaPredicted RBP30.96■■■□□ 2.55
TRIM54-201ENST00000296098 CCDC61Q9Y6R9 512 aa30.96■■■□□ 2.55
TRIM54-201ENST00000296098 TRIM35Q9UPQ4 493 aa30.95■■■□□ 2.55
TRIM54-201ENST00000296098 PANK1Q8TE04 598 aa30.95■■■□□ 2.54
TRIM54-201ENST00000296098 CDK12Q9NYV4 1490 aaPredicted RBP30.94■■■□□ 2.54
TRIM54-201ENST00000296098 NOP58Q9Y2X3 529 aaKnown RBP30.93■■■□□ 2.54
TRIM54-201ENST00000296098 FER1L4A9Z1Z3 1794 aa30.93■■■□□ 2.54
TRIM54-201ENST00000296098 IL16Q14005 1332 aa30.93■■■□□ 2.54
TRIM54-201ENST00000296098 CT47B1P0C2W7 299 aaPredicted RBP30.93■■■□□ 2.54
TRIM54-201ENST00000296098 NME9Q86XW9 330 aa30.93■■■□□ 2.54
TRIM54-201ENST00000296098 IPO9Q96P70 1041 aaKnown RBP30.93■■■□□ 2.54
TRIM54-201ENST00000296098 COG6Q9Y2V7 657 aa30.92■■■□□ 2.54
TRIM54-201ENST00000296098 SIPA1L2Q9P2F8 1722 aaPredicted RBP30.92■■■□□ 2.54
TRIM54-201ENST00000296098 TOPAZ1Q8N9V7 1692 aa30.92■■■□□ 2.54
TRIM54-201ENST00000296098 FCHSD2O94868 740 aa30.91■■■□□ 2.54
TRIM54-201ENST00000296098 PPM1GO15355 546 aaPredicted RBP30.91■■■□□ 2.54
TRIM54-201ENST00000296098 LTKP29376 864 aa30.91■■■□□ 2.54
TRIM54-201ENST00000296098 CLUAP1Q96AJ1 413 aa30.91■■■□□ 2.54
TRIM54-201ENST00000296098 AATKQ6ZMQ8 1374 aa30.91■■■□□ 2.54
TRIM54-201ENST00000296098 SLIT1O75093 1534 aa30.9■■■□□ 2.54
TRIM54-201ENST00000296098 PRR36Q9H6K5 1346 aa30.89■■■□□ 2.54
TRIM54-201ENST00000296098 NCKAP5LQ9HCH0 1330 aa30.89■■■□□ 2.54
TRIM54-201ENST00000296098 CEBPAP49715 358 aaPredicted RBP30.89■■■□□ 2.54
TRIM54-201ENST00000296098 RIPK4P57078 832 aa30.89■■■□□ 2.54
TRIM54-201ENST00000296098 TSR2Q969E8 191 aaKnown RBP30.89■■■□□ 2.54
TRIM54-201ENST00000296098 FBLN1P23142 703 aa30.88■■■□□ 2.53
TRIM54-201ENST00000296098 BCL2L13Q9BXK5 485 aa30.88■■■□□ 2.53
TRIM54-201ENST00000296098 NRKQ7Z2Y5 1582 aa30.88■■■□□ 2.53
TRIM54-201ENST00000296098 RSPH6AQ9H0K4 717 aa30.88■■■□□ 2.53
TRIM54-201ENST00000296098 ARHGAP23Q9P227 1491 aa30.87■■■□□ 2.53
TRIM54-201ENST00000296098 AAMPQ13685 434 aa30.86■■■□□ 2.53
TRIM54-201ENST00000296098 COG3Q96JB2 828 aa30.86■■■□□ 2.53
TRIM54-201ENST00000296098 EMILIN1Q9Y6C2 1016 aa30.86■■■□□ 2.53
TRIM54-201ENST00000296098 ZNF692Q9BU19 519 aaPredicted RBP30.85■■■□□ 2.53
TRIM54-201ENST00000296098 PRKAR2BP31323 418 aa30.85■■■□□ 2.53
TRIM54-201ENST00000296098 EID1Q9Y6B2 187 aa30.85■■■□□ 2.53
TRIM54-201ENST00000296098 NEFMP07197 916 aa30.84■■■□□ 2.53
TRIM54-201ENST00000296098 ZRANB1Q9UGI0 708 aa30.84■■■□□ 2.53
TRIM54-201ENST00000296098 EXOSC9Q06265 439 aaKnown RBP30.83■■■□□ 2.53
TRIM54-201ENST00000296098 NPM2Q86SE8 214 aaKnown RBP30.83■■■□□ 2.53
TRIM54-201ENST00000296098 PTPRUQ92729 1446 aa30.82■■■□□ 2.52
TRIM54-201ENST00000296098 RLBP1P12271 317 aa30.82■■■□□ 2.52
TRIM54-201ENST00000296098 IGHDP01880 384 aa30.81■■■□□ 2.52
TRIM54-201ENST00000296098 TNNQ9UQP3 1299 aa30.8■■■□□ 2.52
TRIM54-201ENST00000296098 IL13P35225 146 aa30.79■■■□□ 2.52
TRIM54-201ENST00000296098 DIP2AQ14689 1571 aa30.79■■■□□ 2.52
TRIM54-201ENST00000296098 PAK3O75914 559 aaPredicted RBP30.78■■■□□ 2.52
TRIM54-201ENST00000296098 ZKSCAN2Q63HK3 967 aa30.78■■■□□ 2.52
TRIM54-201ENST00000296098 SLC26A8Q96RN1 970 aa30.78■■■□□ 2.52
TRIM54-201ENST00000296098 SMC4Q9NTJ3 1288 aa30.77■■■□□ 2.52
TRIM54-201ENST00000296098 ZBTB47Q9UFB7 747 aaPredicted RBP30.77■■■□□ 2.52
TRIM54-201ENST00000296098 PTCH1Q13635 1447 aa30.76■■■□□ 2.51
TRIM54-201ENST00000296098 HMOX1P09601 288 aa30.76■■■□□ 2.51
TRIM54-201ENST00000296098 RGS3P49796 1198 aa30.76■■■□□ 2.51
TRIM54-201ENST00000296098 NFE2L2Q16236 605 aa30.75■■■□□ 2.51
TRIM54-201ENST00000296098 FAM161AQ3B820 660 aa30.75■■■□□ 2.51
TRIM54-201ENST00000296098 PMFBP1Q8TBY8 1022 aa30.74■■■□□ 2.51
TRIM54-201ENST00000296098 RRS1Q15050 365 aaKnown RBP30.73■■■□□ 2.51
TRIM54-201ENST00000296098 ACEP12821 1306 aa30.73■■■□□ 2.51
TRIM54-201ENST00000296098 NALCNQ8IZF0 1738 aa30.73■■■□□ 2.51
TRIM54-201ENST00000296098 PLEKHG3A1L390 1219 aa30.73■■■□□ 2.51
TRIM54-201ENST00000296098 MVPQ14764 893 aaKnown RBP30.73■■■□□ 2.51
TRIM54-201ENST00000296098 FTSJ3Q8IY81 847 aaKnown RBP30.73■■■□□ 2.51
TRIM54-201ENST00000296098 USP6P35125 1406 aa30.73■■■□□ 2.51
TRIM54-201ENST00000296098 TTC21BQ7Z4L5 1316 aa30.72■■■□□ 2.51
TRIM54-201ENST00000296098 OVOS2A0A0J9YW53 1432 aa30.72■■■□□ 2.51
TRIM54-201ENST00000296098 OVOS2Q6IE36 1432 aa30.72■■■□□ 2.51
TRIM54-201ENST00000296098 DZIP1LQ8IYY4 767 aaKnown RBP30.72■■■□□ 2.51
TRIM54-201ENST00000296098 SSH1Q8WYL5 1049 aa30.72■■■□□ 2.51
TRIM54-201ENST00000296098 PLPPR3Q6T4P5 718 aa30.71■■■□□ 2.51
TRIM54-201ENST00000296098 PHACTR3Q96KR7 559 aa30.71■■■□□ 2.51
TRIM54-201ENST00000296098 TBX22Q9Y458 520 aa30.71■■■□□ 2.51
TRIM54-201ENST00000296098 C8orf34Q49A92 452 aa30.7■■■□□ 2.51
TRIM54-201ENST00000296098 AMOTL2Q9Y2J4 779 aa30.7■■■□□ 2.51
Retrieved 100 of 20,778 RNA–protein pairs in 122 ms