RNA–Protein interactions for RNA: ENST00000292478.8

PTCD1-201, Transcript of pentatricopeptide repeat domain 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTCD1, Length 5,582 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD1-201ENST00000292478 SURF6O75683 361 aaKnown RBP15.42■□□□□ 0.06
PTCD1-201ENST00000292478 HSP90AA2PQ14568 343 aaPredicted RBP15.42■□□□□ 0.06
PTCD1-201ENST00000292478 NEUROD6Q96NK8 337 aa15.42■□□□□ 0.06
PTCD1-201ENST00000292478 CDK13Q14004 1512 aaKnown RBP15.42■□□□□ 0.06
PTCD1-201ENST00000292478 MBD3O95983 291 aa15.42■□□□□ 0.06
PTCD1-201ENST00000292478 AIMP1Q12904 312 aaKnown RBP15.42■□□□□ 0.06
PTCD1-201ENST00000292478 PDZRN4Q6ZMN7 1036 aaPredicted RBP15.42■□□□□ 0.06
PTCD1-201ENST00000292478 SYTL4Q96C24 671 aaPredicted RBP15.41■□□□□ 0.06
PTCD1-201ENST00000292478 PTPN23Q9H3S7 1636 aa15.41■□□□□ 0.06
PTCD1-201ENST00000292478 CABP1Q9NZU7 370 aa15.41■□□□□ 0.06
PTCD1-201ENST00000292478 FSD1Q9BTV5 496 aa15.41■□□□□ 0.06
PTCD1-201ENST00000292478 FCHSD2O94868 740 aa15.4■□□□□ 0.06
PTCD1-201ENST00000292478 PDCP20941 246 aa15.4■□□□□ 0.06
PTCD1-201ENST00000292478 ATF7IPQ6VMQ6 1270 aa15.4■□□□□ 0.06
PTCD1-201ENST00000292478 MVPQ14764 893 aaKnown RBP15.4■□□□□ 0.06
PTCD1-201ENST00000292478 CAMSAP2Q08AD1 1489 aa15.4■□□□□ 0.06
PTCD1-201ENST00000292478 NAT10Q9H0A0 1025 aaKnown RBP15.4■□□□□ 0.06
PTCD1-201ENST00000292478 WASHC4Q2M389 1173 aa15.39■□□□□ 0.05
PTCD1-201ENST00000292478 ARID3AQ99856 593 aa15.39■□□□□ 0.05
PTCD1-201ENST00000292478 XBP1P17861 261 aa15.39■□□□□ 0.05
PTCD1-201ENST00000292478 AKNAQ7Z591 1439 aa15.39■□□□□ 0.05
PTCD1-201ENST00000292478 NUTM2GQ5VZR2 741 aa15.39■□□□□ 0.05
PTCD1-201ENST00000292478 CWC22Q9HCG8 908 aaKnown RBP15.39■□□□□ 0.05
PTCD1-201ENST00000292478 TATP17735 454 aaPredicted RBP15.38■□□□□ 0.05
PTCD1-201ENST00000292478 ESCO1Q5FWF5 840 aa15.38■□□□□ 0.05
PTCD1-201ENST00000292478 BRMS1Q9HCU9 246 aa15.38■□□□□ 0.05
PTCD1-201ENST00000292478 TBC1D2BQ9UPU7 963 aa15.38■□□□□ 0.05
PTCD1-201ENST00000292478 SRCIN1Q9C0H9 1055 aa15.38■□□□□ 0.05
PTCD1-201ENST00000292478 KIF14Q15058 1648 aa15.38■□□□□ 0.05
PTCD1-201ENST00000292478 SULT6B1Q6IMI4 303 aa15.38■□□□□ 0.05
PTCD1-201ENST00000292478 BCAR3O75815 825 aa15.38■□□□□ 0.05
PTCD1-201ENST00000292478 ZBTB4Q9P1Z0 1013 aaPredicted RBP15.38■□□□□ 0.05
PTCD1-201ENST00000292478 BACH2Q9BYV9 841 aa15.37■□□□□ 0.05
PTCD1-201ENST00000292478 SLC4A2P04920 1241 aa15.37■□□□□ 0.05
PTCD1-201ENST00000292478 POGZQ7Z3K3 1410 aa15.37■□□□□ 0.05
PTCD1-201ENST00000292478 AEBP2Q6ZN18 517 aaPredicted RBP15.37■□□□□ 0.05
PTCD1-201ENST00000292478 CCDC39Q9UFE4 941 aa15.37■□□□□ 0.05
PTCD1-201ENST00000292478 RBM33Q96EV2 1170 aaKnown RBP15.37■□□□□ 0.05
PTCD1-201ENST00000292478 TNNT3P45378 269 aaPredicted RBP15.36■□□□□ 0.05
PTCD1-201ENST00000292478 HDGFL1Q5TGJ6 251 aa15.36■□□□□ 0.05
PTCD1-201ENST00000292478 KIF6Q6ZMV9 814 aa15.36■□□□□ 0.05
PTCD1-201ENST00000292478 TSR2Q969E8 191 aaKnown RBP15.36■□□□□ 0.05
PTCD1-201ENST00000292478 ABCC5O15440 1437 aa15.36■□□□□ 0.05
PTCD1-201ENST00000292478 SART3Q15020 963 aaKnown RBP15.36■□□□□ 0.05
PTCD1-201ENST00000292478 CTDP1Q9Y5B0 961 aaPredicted RBP15.36■□□□□ 0.05
PTCD1-201ENST00000292478 DHX16O60231 1041 aaKnown RBP15.35■□□□□ 0.05
PTCD1-201ENST00000292478 PROSER2Q86WR7 435 aaPredicted RBP15.35■□□□□ 0.05
PTCD1-201ENST00000292478 LRRCC1Q9C099 1032 aa15.35■□□□□ 0.05
PTCD1-201ENST00000292478 TCEAL9Q9UHQ7 104 aa15.35■□□□□ 0.05
PTCD1-201ENST00000292478 TRAK2O60296 914 aa15.35■□□□□ 0.05
PTCD1-201ENST00000292478 PCMTD1Q96MG8 357 aaPredicted RBP15.35■□□□□ 0.05
PTCD1-201ENST00000292478 SLFN5Q08AF3 891 aa15.35■□□□□ 0.05
PTCD1-201ENST00000292478 FAM43AQ8N2R8 423 aa15.35■□□□□ 0.05
PTCD1-201ENST00000292478 NEK4P51957 841 aa15.35■□□□□ 0.05
PTCD1-201ENST00000292478 MSH5O43196 834 aa15.35■□□□□ 0.05
PTCD1-201ENST00000292478 ARHGEF11O15085 1522 aa15.34■□□□□ 0.05
PTCD1-201ENST00000292478 ANKRD1Q15327 319 aa15.34■□□□□ 0.05
PTCD1-201ENST00000292478 OLFM4Q6UX06 510 aa15.34■□□□□ 0.05
PTCD1-201ENST00000292478 NSD3Q9BZ95 1437 aa15.34■□□□□ 0.05
PTCD1-201ENST00000292478 NASPP49321 788 aaPredicted RBP15.34■□□□□ 0.05
PTCD1-201ENST00000292478 CCAR2Q8N163 923 aaKnown RBP15.34■□□□□ 0.05
PTCD1-201ENST00000292478 SPG7Q9UQ90 795 aa15.34■□□□□ 0.05
PTCD1-201ENST00000292478 HOMER1Q86YM7 354 aa15.33■□□□□ 0.05
PTCD1-201ENST00000292478 RPAP2Q8IXW5 612 aaPredicted RBP15.33■□□□□ 0.05
PTCD1-201ENST00000292478 ABCC11Q96J66 1382 aa15.33■□□□□ 0.04
PTCD1-201ENST00000292478 NFE2L2Q16236 605 aa15.33■□□□□ 0.04
PTCD1-201ENST00000292478 ZNF592Q92610 1267 aa15.33■□□□□ 0.04
PTCD1-201ENST00000292478 PEG3Q9GZU2 1588 aa15.33■□□□□ 0.04
PTCD1-201ENST00000292478 AEBP1Q8IUX7 1158 aa15.33■□□□□ 0.04
PTCD1-201ENST00000292478 CHD1LQ86WJ1 897 aa15.32■□□□□ 0.04
PTCD1-201ENST00000292478 ZNF396Q96N95 335 aaPredicted RBP15.32■□□□□ 0.04
PTCD1-201ENST00000292478 MEX3CQ5U5Q3 659 aaKnown RBP15.32■□□□□ 0.04
PTCD1-201ENST00000292478 CCDC158Q5M9N0 1113 aa15.32■□□□□ 0.04
PTCD1-201ENST00000292478 PDIA4P13667 645 aaKnown RBP15.31■□□□□ 0.04
PTCD1-201ENST00000292478 GRIN2AQ12879 1464 aa15.31■□□□□ 0.04
PTCD1-201ENST00000292478 ZNF530Q6P9A1 599 aaPredicted RBP15.31■□□□□ 0.04
PTCD1-201ENST00000292478 C1orf115Q9H7X2 142 aa15.31■□□□□ 0.04
PTCD1-201ENST00000292478 CIZ1Q9ULV3 898 aaPredicted RBP15.31■□□□□ 0.04
PTCD1-201ENST00000292478 SDF4Q9BRK5 362 aa15.3■□□□□ 0.04
PTCD1-201ENST00000292478 DHX8Q14562 1220 aaKnown RBP15.3■□□□□ 0.04
PTCD1-201ENST00000292478 DDX24Q9GZR7 859 aaKnown RBP eCLIP15.3■□□□□ 0.04
PTCD1-201ENST00000292478 SLC3A2P08195 630 aaKnown RBP15.3■□□□□ 0.04
PTCD1-201ENST00000292478 CYP46A1Q9Y6A2 500 aa15.3■□□□□ 0.04
PTCD1-201ENST00000292478 BICRAQ9NZM4 1560 aa15.3■□□□□ 0.04
PTCD1-201ENST00000292478 TMPOP42166 694 aaKnown RBP15.3■□□□□ 0.04
PTCD1-201ENST00000292478 ANKLE2Q86XL3 938 aa15.3■□□□□ 0.04
PTCD1-201ENST00000292478 CCDC61Q9Y6R9 512 aa15.3■□□□□ 0.04
PTCD1-201ENST00000292478 K7ELQ4 463 aaPredicted RBP15.3■□□□□ 0.04
PTCD1-201ENST00000292478 DNAJC2Q99543 621 aaKnown RBP15.3■□□□□ 0.04
PTCD1-201ENST00000292478 CCDC27Q2M243 656 aa15.29■□□□□ 0.04
PTCD1-201ENST00000292478 TSPY26PQ9H489 355 aa15.29■□□□□ 0.04
PTCD1-201ENST00000292478 BIVM-ERCC5R4GMW8 1640 aa15.29■□□□□ 0.04
PTCD1-201ENST00000292478 RAD21O60216 631 aa15.29■□□□□ 0.04
PTCD1-201ENST00000292478 ALDH1L2Q3SY69 923 aa15.29■□□□□ 0.04
PTCD1-201ENST00000292478 ARGLU1Q9NWB6 273 aaPredicted RBP15.29■□□□□ 0.04
PTCD1-201ENST00000292478 CABP4P57796 275 aa15.28■□□□□ 0.04
PTCD1-201ENST00000292478 KINO60870 393 aaKnown RBP15.28■□□□□ 0.04
PTCD1-201ENST00000292478 GNL3LQ9NVN8 582 aaKnown RBP15.28■□□□□ 0.04
PTCD1-201ENST00000292478 IFT57Q9NWB7 429 aa15.28■□□□□ 0.04
PTCD1-201ENST00000292478 RAPGEF3O95398 923 aa15.28■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms