RNA–Protein interactions for RNA: ENST00000276573.11

TRIM55-201, Transcript of tripartite motif containing 55, humanhuman

TSL 1 (best) BASIC

Gene TRIM55, Length 1,960 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM55-201ENST00000276573 PHF23Q9BUL5 403 aaPredicted RBP12.59□□□□□ -0.39
TRIM55-201ENST00000276573 CDC42BPGQ6DT37 1551 aa12.58□□□□□ -0.39
TRIM55-201ENST00000276573 CEP170BQ9Y4F5 1589 aaPredicted RBP12.58□□□□□ -0.39
TRIM55-201ENST00000276573 COL3A1P02461 1466 aaPredicted RBP12.58□□□□□ -0.39
TRIM55-201ENST00000276573 DMRT2Q9Y5R5 561 aa12.58□□□□□ -0.4
TRIM55-201ENST00000276573 DIP2AQ14689 1571 aa12.58□□□□□ -0.4
TRIM55-201ENST00000276573 DIAPH1O60610 1272 aaKnown RBP12.58□□□□□ -0.4
TRIM55-201ENST00000276573 NME9Q86XW9 330 aa12.58□□□□□ -0.4
TRIM55-201ENST00000276573 POLKQ9UBT6 870 aa12.58□□□□□ -0.4
TRIM55-201ENST00000276573 ADAMTSL3P82987 1691 aa12.58□□□□□ -0.4
TRIM55-201ENST00000276573 U2SURPO15042 1029 aaKnown RBP12.57□□□□□ -0.4
TRIM55-201ENST00000276573 NEUROD2Q15784 382 aa12.57□□□□□ -0.4
TRIM55-201ENST00000276573 CCDC27Q2M243 656 aa12.57□□□□□ -0.4
TRIM55-201ENST00000276573 ANKLE2Q86XL3 938 aa12.57□□□□□ -0.4
TRIM55-201ENST00000276573 EXOC6Q8TAG9 804 aa12.57□□□□□ -0.4
TRIM55-201ENST00000276573 RRP7AQ9Y3A4 280 aaKnown RBP12.57□□□□□ -0.4
TRIM55-201ENST00000276573 PTCH1Q13635 1447 aa12.56□□□□□ -0.4
TRIM55-201ENST00000276573 PLIN1O60240 522 aa12.56□□□□□ -0.4
TRIM55-201ENST00000276573 FBLN1P23142 703 aa12.56□□□□□ -0.4
TRIM55-201ENST00000276573 WDR63Q8IWG1 891 aa12.56□□□□□ -0.4
TRIM55-201ENST00000276573 CCDC136Q96JN2 1154 aa12.56□□□□□ -0.4
TRIM55-201ENST00000276573 PLEKHF1Q96S99 279 aa12.56□□□□□ -0.4
TRIM55-201ENST00000276573 ZRANB1Q9UGI0 708 aa12.56□□□□□ -0.4
TRIM55-201ENST00000276573 IQSEC2Q5JU85 1478 aa12.56□□□□□ -0.4
TRIM55-201ENST00000276573 PIK3R4Q99570 1358 aa12.56□□□□□ -0.4
TRIM55-201ENST00000276573 ACEP12821 1306 aa12.55□□□□□ -0.4
TRIM55-201ENST00000276573 NUTM2FA1L443 756 aa12.55□□□□□ -0.4
TRIM55-201ENST00000276573 COG3Q96JB2 828 aa12.55□□□□□ -0.4
TRIM55-201ENST00000276573 MON2Q7Z3U7 1717 aa12.55□□□□□ -0.4
TRIM55-201ENST00000276573 AKAP12Q02952 1782 aa12.55□□□□□ -0.4
TRIM55-201ENST00000276573 NKTRP30414 1462 aaKnown RBP12.54□□□□□ -0.4
TRIM55-201ENST00000276573 AATKQ6ZMQ8 1374 aa12.54□□□□□ -0.4
TRIM55-201ENST00000276573 PNNQ9H307 717 aaKnown RBP12.54□□□□□ -0.4
TRIM55-201ENST00000276573 TTC21BQ7Z4L5 1316 aa12.54□□□□□ -0.4
TRIM55-201ENST00000276573 PPM1GO15355 546 aaPredicted RBP12.53□□□□□ -0.4
TRIM55-201ENST00000276573 KCNA6P17658 529 aa12.53□□□□□ -0.4
TRIM55-201ENST00000276573 ITSN1Q15811 1721 aa12.53□□□□□ -0.4
TRIM55-201ENST00000276573 TMPOP42166 694 aaKnown RBP12.52□□□□□ -0.4
TRIM55-201ENST00000276573 TOPAZ1Q8N9V7 1692 aa12.52□□□□□ -0.41
TRIM55-201ENST00000276573 XRN1Q8IZH2 1706 aaKnown RBP12.52□□□□□ -0.41
TRIM55-201ENST00000276573 SETD1BQ9UPS6 1966 aaKnown RBP12.52□□□□□ -0.41
TRIM55-201ENST00000276573 FCHSD2O94868 740 aa12.52□□□□□ -0.41
TRIM55-201ENST00000276573 GOLGA6L2Q8N9W4 650 aaPredicted RBP12.52□□□□□ -0.41
TRIM55-201ENST00000276573 EMILIN1Q9Y6C2 1016 aa12.52□□□□□ -0.41
TRIM55-201ENST00000276573 MAP2P11137 1827 aaKnown RBP12.52□□□□□ -0.41
TRIM55-201ENST00000276573 CRBNQ96SW2 442 aa12.51□□□□□ -0.41
TRIM55-201ENST00000276573 ZNF142P52746 1687 aaPredicted RBP12.51□□□□□ -0.41
TRIM55-201ENST00000276573 USP6P35125 1406 aa12.5□□□□□ -0.41
TRIM55-201ENST00000276573 MAPK8IP3Q9UPT6 1336 aa12.5□□□□□ -0.41
TRIM55-201ENST00000276573 IL13P35225 146 aa12.5□□□□□ -0.41
TRIM55-201ENST00000276573 C20orf194Q5TEA3 1177 aa12.5□□□□□ -0.41
TRIM55-201ENST00000276573 SSH2Q76I76 1423 aa12.49□□□□□ -0.41
TRIM55-201ENST00000276573 PMFBP1Q8TBY8 1022 aa12.49□□□□□ -0.41
TRIM55-201ENST00000276573 RSPH6AQ9H0K4 717 aa12.49□□□□□ -0.41
TRIM55-201ENST00000276573 TRIM35Q9UPQ4 493 aa12.49□□□□□ -0.41
TRIM55-201ENST00000276573 BCAR3O75815 825 aa12.49□□□□□ -0.41
TRIM55-201ENST00000276573 RRS1Q15050 365 aaKnown RBP12.49□□□□□ -0.41
TRIM55-201ENST00000276573 NGDNQ8NEJ9 315 aaKnown RBP12.48□□□□□ -0.41
TRIM55-201ENST00000276573 MYH16Q9H6N6 1097 aa12.48□□□□□ -0.41
TRIM55-201ENST00000276573 CDK12Q9NYV4 1490 aaPredicted RBP12.48□□□□□ -0.41
TRIM55-201ENST00000276573 NRKQ7Z2Y5 1582 aa12.47□□□□□ -0.41
TRIM55-201ENST00000276573 TTC21AQ8NDW8 1320 aa12.47□□□□□ -0.41
TRIM55-201ENST00000276573 RIPK4P57078 832 aa12.47□□□□□ -0.41
TRIM55-201ENST00000276573 CHD2O14647 1828 aaKnown RBP12.47□□□□□ -0.41
TRIM55-201ENST00000276573 PRKAR2BP31323 418 aa12.47□□□□□ -0.41
TRIM55-201ENST00000276573 ANKARQ7Z5J8 1434 aa12.46□□□□□ -0.41
TRIM55-201ENST00000276573 OVOS2A0A0J9YW53 1432 aa12.46□□□□□ -0.41
TRIM55-201ENST00000276573 OVOS2Q6IE36 1432 aa12.46□□□□□ -0.41
TRIM55-201ENST00000276573 IL16Q14005 1332 aa12.46□□□□□ -0.42
TRIM55-201ENST00000276573 NEFMP07197 916 aa12.45□□□□□ -0.42
TRIM55-201ENST00000276573 HMOX1P09601 288 aa12.45□□□□□ -0.42
TRIM55-201ENST00000276573 RBM19Q9Y4C8 960 aaKnown RBP12.45□□□□□ -0.42
TRIM55-201ENST00000276573 USP31Q70CQ4 1352 aa12.45□□□□□ -0.42
TRIM55-201ENST00000276573 RARSP54136 660 aaKnown RBP12.45□□□□□ -0.42
TRIM55-201ENST00000276573 RGPD8O14715 1765 aaPredicted RBP12.45□□□□□ -0.42
TRIM55-201ENST00000276573 NPHP4O75161 1426 aaPredicted RBP12.44□□□□□ -0.42
TRIM55-201ENST00000276573 PHACTR3Q96KR7 559 aa12.44□□□□□ -0.42
TRIM55-201ENST00000276573 NFE2L2Q16236 605 aa12.43□□□□□ -0.42
TRIM55-201ENST00000276573 PDE3AQ14432 1141 aa12.43□□□□□ -0.42
TRIM55-201ENST00000276573 FMN2Q9NZ56 1722 aa12.43□□□□□ -0.42
TRIM55-201ENST00000276573 LRRC7Q96NW7 1537 aa12.42□□□□□ -0.42
TRIM55-201ENST00000276573 CT47B1P0C2W7 299 aaPredicted RBP12.42□□□□□ -0.42
TRIM55-201ENST00000276573 EIF4A2Q14240 407 aaKnown RBP12.42□□□□□ -0.42
TRIM55-201ENST00000276573 TSR2Q969E8 191 aaKnown RBP12.41□□□□□ -0.42
TRIM55-201ENST00000276573 RBM33Q96EV2 1170 aaKnown RBP12.41□□□□□ -0.42
TRIM55-201ENST00000276573 FANCIQ9NVI1 1328 aa12.41□□□□□ -0.42
TRIM55-201ENST00000276573 EXOSC9Q06265 439 aaKnown RBP12.41□□□□□ -0.42
TRIM55-201ENST00000276573 PHF8Q9UPP1 1060 aa12.41□□□□□ -0.42
TRIM55-201ENST00000276573 NALCNQ8IZF0 1738 aa12.4□□□□□ -0.42
TRIM55-201ENST00000276573 NLRP6P59044 892 aa12.39□□□□□ -0.43
TRIM55-201ENST00000276573 HSP90AB2PQ58FF8 381 aa12.39□□□□□ -0.43
TRIM55-201ENST00000276573 MAP3K19Q56UN5 1328 aa12.39□□□□□ -0.43
TRIM55-201ENST00000276573 ADGRL3Q9HAR2 1447 aa12.38□□□□□ -0.43
TRIM55-201ENST00000276573 SOX12O15370 315 aa12.38□□□□□ -0.43
TRIM55-201ENST00000276573 CANXP27824 592 aaKnown RBP12.38□□□□□ -0.43
TRIM55-201ENST00000276573 FRAT1Q92837 279 aaPredicted RBP12.38□□□□□ -0.43
TRIM55-201ENST00000276573 CALD1Q05682 793 aaKnown RBP12.38□□□□□ -0.43
TRIM55-201ENST00000276573 SULT6B1Q6IMI4 303 aa12.38□□□□□ -0.43
TRIM55-201ENST00000276573 PEAK1Q9H792 1746 aa12.37□□□□□ -0.43
TRIM55-201ENST00000276573 ABTB2Q8N961 1025 aa12.37□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms