RNA–Protein interactions for RNA: ENST00000273342.8

COL8A1-202, Transcript of collagen type VIII alpha 1 chain, humanhuman

APPRIS P1 TSL 2 BASIC

Gene COL8A1, Length 3,029 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1-202ENST00000273342 SPHKAPQ2M3C7 1700 aa16.1■□□□□ 0.17
COL8A1-202ENST00000273342 IQSEC2Q5JU85 1478 aa16.1■□□□□ 0.17
COL8A1-202ENST00000273342 DDIT3P35638 169 aa16.1■□□□□ 0.17
COL8A1-202ENST00000273342 TBC1D9Q6ZT07 1266 aa16.1■□□□□ 0.17
COL8A1-202ENST00000273342 CHAMP1Q96JM3 812 aa16.1■□□□□ 0.17
COL8A1-202ENST00000273342 FOXD4L5Q5VV16 416 aaPredicted RBP16.09■□□□□ 0.17
COL8A1-202ENST00000273342 FOXD4L4Q8WXT5 416 aaPredicted RBP16.09■□□□□ 0.17
COL8A1-202ENST00000273342 ZNF518AQ6AHZ1 1483 aa16.09■□□□□ 0.17
COL8A1-202ENST00000273342 MCTP1Q6DN14 999 aa16.08■□□□□ 0.17
COL8A1-202ENST00000273342 CFAP65Q6ZU64 1925 aaKnown RBP16.08■□□□□ 0.17
COL8A1-202ENST00000273342 K7ELQ4 463 aaPredicted RBP16.08■□□□□ 0.16
COL8A1-202ENST00000273342 SHPRHQ149N8 1683 aa16.07■□□□□ 0.16
COL8A1-202ENST00000273342 CD109Q6YHK3 1445 aa16.07■□□□□ 0.16
COL8A1-202ENST00000273342 IPO8O15397 1037 aaKnown RBP16.07■□□□□ 0.16
COL8A1-202ENST00000273342 PKP1Q13835 747 aa16.07■□□□□ 0.16
COL8A1-202ENST00000273342 CAVIN1Q6NZI2 390 aaKnown RBP16.07■□□□□ 0.16
COL8A1-202ENST00000273342 ANP32BQ92688 251 aaKnown RBP16.07■□□□□ 0.16
COL8A1-202ENST00000273342 SNX21Q969T3 373 aa16.07■□□□□ 0.16
COL8A1-202ENST00000273342 ZMYM3Q14202 1370 aa16.06■□□□□ 0.16
COL8A1-202ENST00000273342 ABCA6Q8N139 1617 aa16.06■□□□□ 0.16
COL8A1-202ENST00000273342 HMOX1P09601 288 aa16.06■□□□□ 0.16
COL8A1-202ENST00000273342 PLEKHF1Q96S99 279 aa16.06■□□□□ 0.16
COL8A1-202ENST00000273342 ATAD2Q6PL18 1390 aa16.06■□□□□ 0.16
COL8A1-202ENST00000273342 GOLGA6L22H0YM25 854 aa16.05■□□□□ 0.16
COL8A1-202ENST00000273342 TSPYL6Q8N831 410 aa16.05■□□□□ 0.16
COL8A1-202ENST00000273342 MSNP26038 577 aaKnown RBP16.04■□□□□ 0.16
COL8A1-202ENST00000273342 SKOR2Q2VWA4 1001 aaPredicted RBP16.04■□□□□ 0.16
COL8A1-202ENST00000273342 BAG4O95429 457 aaKnown RBP16.04■□□□□ 0.16
COL8A1-202ENST00000273342 BMP2KLQ5H9B9 411 aa16.04■□□□□ 0.16
COL8A1-202ENST00000273342 TPRNQ4KMQ1 711 aa16.03■□□□□ 0.16
COL8A1-202ENST00000273342 C16orf71Q8IYS4 520 aaPredicted RBP16.03■□□□□ 0.16
COL8A1-202ENST00000273342 C14orf93Q9H972 538 aaKnown RBP16.03■□□□□ 0.16
COL8A1-202ENST00000273342 EVC2Q86UK5 1308 aa16.03■□□□□ 0.16
COL8A1-202ENST00000273342 MINK1Q8N4C8 1332 aaPredicted RBP16.03■□□□□ 0.16
COL8A1-202ENST00000273342 RBM27Q9P2N5 1060 aaKnown RBP16.03■□□□□ 0.16
COL8A1-202ENST00000273342 R3HCC1Q9Y3T6 440 aaKnown RBP16.03■□□□□ 0.16
COL8A1-202ENST00000273342 KIF16BQ96L93 1317 aa16.03■□□□□ 0.16
COL8A1-202ENST00000273342 SUGP2Q8IX01 1082 aaKnown RBP eCLIP16.03■□□□□ 0.16
COL8A1-202ENST00000273342 FAM13BQ9NYF5 915 aa16.03■□□□□ 0.16
COL8A1-202ENST00000273342 CIZ1Q9ULV3 898 aaPredicted RBP16.03■□□□□ 0.16
COL8A1-202ENST00000273342 RAPGEF3O95398 923 aa16.02■□□□□ 0.16
COL8A1-202ENST00000273342 PRKAR2BP31323 418 aa16.02■□□□□ 0.15
COL8A1-202ENST00000273342 NCOA3Q9Y6Q9 1424 aa16.02■□□□□ 0.15
COL8A1-202ENST00000273342 MAP3K4Q9Y6R4 1608 aa16.01■□□□□ 0.15
COL8A1-202ENST00000273342 NPM1P06748 294 aaKnown RBP eCLIP16.01■□□□□ 0.15
COL8A1-202ENST00000273342 SIRT2Q8IXJ6 389 aa16.01■□□□□ 0.15
COL8A1-202ENST00000273342 ZBTB7BO15156 539 aaPredicted RBP16.01■□□□□ 0.15
COL8A1-202ENST00000273342 DIAPH1O60610 1272 aaKnown RBP16.01■□□□□ 0.15
COL8A1-202ENST00000273342 CT47B1P0C2W7 299 aaPredicted RBP16.01■□□□□ 0.15
COL8A1-202ENST00000273342 XPCQ01831 940 aaPredicted RBP16.01■□□□□ 0.15
COL8A1-202ENST00000273342 CCDC173Q0VFZ6 552 aa16■□□□□ 0.15
COL8A1-202ENST00000273342 MPNDQ8N594 471 aa16■□□□□ 0.15
COL8A1-202ENST00000273342 ABCC1P33527 1531 aa16■□□□□ 0.15
COL8A1-202ENST00000273342 PRPF40AO75400 957 aaKnown RBP16■□□□□ 0.15
COL8A1-202ENST00000273342 CALD1Q05682 793 aaKnown RBP16■□□□□ 0.15
COL8A1-202ENST00000273342 FOXD4L6Q3SYB3 417 aaPredicted RBP16■□□□□ 0.15
COL8A1-202ENST00000273342 FOXD4L3Q6VB84 417 aaPredicted RBP16■□□□□ 0.15
COL8A1-202ENST00000273342 ZSCAN30Q86W11 494 aa16■□□□□ 0.15
COL8A1-202ENST00000273342 ISY1Q9ULR0 285 aaKnown RBP16■□□□□ 0.15
COL8A1-202ENST00000273342 AK9Q5TCS8 1911 aa16■□□□□ 0.15
COL8A1-202ENST00000273342 CHD1O14646 1710 aa16■□□□□ 0.15
COL8A1-202ENST00000273342 PPIP5K1Q6PFW1 1433 aa15.99■□□□□ 0.15
COL8A1-202ENST00000273342 FYB1O15117 783 aa15.99■□□□□ 0.15
COL8A1-202ENST00000273342 OTUD7AQ8TE49 926 aaPredicted RBP15.99■□□□□ 0.15
COL8A1-202ENST00000273342 PHACTR3Q96KR7 559 aa15.99■□□□□ 0.15
COL8A1-202ENST00000273342 ZGPATQ8N5A5 531 aaKnown RBP15.99■□□□□ 0.15
COL8A1-202ENST00000273342 RNF214Q8ND24 703 aa15.98■□□□□ 0.15
COL8A1-202ENST00000273342 GSPT1P15170 499 aaKnown RBP15.98■□□□□ 0.15
COL8A1-202ENST00000273342 RBSNQ9H1K0 784 aa15.98■□□□□ 0.15
COL8A1-202ENST00000273342 A0A1W2PP64 1363 aa15.98■□□□□ 0.15
COL8A1-202ENST00000273342 NOL8Q76FK4 1167 aaKnown RBP15.97■□□□□ 0.15
COL8A1-202ENST00000273342 PRIM1P49642 420 aaKnown RBP15.97■□□□□ 0.15
COL8A1-202ENST00000273342 KLHL40Q2TBA0 621 aa15.97■□□□□ 0.15
COL8A1-202ENST00000273342 ZSCAN23Q3MJ62 389 aa15.97■□□□□ 0.15
COL8A1-202ENST00000273342 SBNO2Q9Y2G9 1366 aa15.97■□□□□ 0.15
COL8A1-202ENST00000273342 SMARCA5O60264 1052 aaPredicted RBP15.97■□□□□ 0.15
COL8A1-202ENST00000273342 CDC45O75419 566 aa15.97■□□□□ 0.15
COL8A1-202ENST00000273342 ANKRD36BQ8N2N9 1353 aa15.97■□□□□ 0.15
COL8A1-202ENST00000273342 ZFYVE16Q7Z3T8 1539 aa15.96■□□□□ 0.15
COL8A1-202ENST00000273342 TPM2P07951 284 aa15.96■□□□□ 0.15
COL8A1-202ENST00000273342 DCTN1Q14203 1278 aa15.96■□□□□ 0.15
COL8A1-202ENST00000273342 GCC1Q96CN9 775 aa15.95■□□□□ 0.14
COL8A1-202ENST00000273342 ABCC11Q96J66 1382 aa15.95■□□□□ 0.14
COL8A1-202ENST00000273342 FANCAO15360 1455 aa15.95■□□□□ 0.14
COL8A1-202ENST00000273342 MYOM2P54296 1465 aa15.95■□□□□ 0.14
COL8A1-202ENST00000273342 FAM83GA6ND36 823 aa15.94■□□□□ 0.14
COL8A1-202ENST00000273342 VAMP4O75379 141 aa15.94■□□□□ 0.14
COL8A1-202ENST00000273342 PPP1R9BQ96SB3 815 aa15.94■□□□□ 0.14
COL8A1-202ENST00000273342 MRPL50Q8N5N7 158 aaKnown RBP15.93■□□□□ 0.14
COL8A1-202ENST00000273342 NSFL1CQ9UNZ2 370 aaKnown RBP15.93■□□□□ 0.14
COL8A1-202ENST00000273342 TET3O43151 1660 aa15.93■□□□□ 0.14
COL8A1-202ENST00000273342 SYCE3A1L190 88 aa15.93■□□□□ 0.14
COL8A1-202ENST00000273342 MLECQ14165 292 aa15.93■□□□□ 0.14
COL8A1-202ENST00000273342 PLPPR3Q6T4P5 718 aa15.93■□□□□ 0.14
COL8A1-202ENST00000273342 LMBRD1Q9NUN5 540 aa15.93■□□□□ 0.14
COL8A1-202ENST00000273342 STAG3Q9UJ98 1225 aa15.93■□□□□ 0.14
COL8A1-202ENST00000273342 OFD1O75665 1012 aa15.92■□□□□ 0.14
COL8A1-202ENST00000273342 ALDH1L2Q3SY69 923 aa15.92■□□□□ 0.14
COL8A1-202ENST00000273342 PLEKHM2Q8IWE5 1019 aa15.92■□□□□ 0.14
COL8A1-202ENST00000273342 C8orf58Q8NAV2 365 aa15.92■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms