RNA–Protein interactions for RNA: ENST00000267996.11

TPM1-201, Transcript of tropomyosin 1, humanhuman

TSL 1 (best) BASIC

Gene TPM1, Length 1,670 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-201ENST00000267996 PNPLA6Q8IY17 1366 aa21.8■■□□□ 1.08
TPM1-201ENST00000267996 AATKQ6ZMQ8 1374 aa21.8■■□□□ 1.08
TPM1-201ENST00000267996 SMG6Q86US8 1419 aaKnown RBP21.79■■□□□ 1.08
TPM1-201ENST00000267996 PMFBP1Q8TBY8 1022 aa21.79■■□□□ 1.08
TPM1-201ENST00000267996 RBM33Q96EV2 1170 aaKnown RBP21.79■■□□□ 1.08
TPM1-201ENST00000267996 ZRANB1Q9UGI0 708 aa21.79■■□□□ 1.08
TPM1-201ENST00000267996 TTC21AQ8NDW8 1320 aa21.78■■□□□ 1.08
TPM1-201ENST00000267996 STRCQ7RTU9 1775 aa21.78■■□□□ 1.08
TPM1-201ENST00000267996 PROSER2Q86WR7 435 aaPredicted RBP21.78■■□□□ 1.08
TPM1-201ENST00000267996 COG3Q96JB2 828 aa21.78■■□□□ 1.08
TPM1-201ENST00000267996 OVOS2A0A0J9YW53 1432 aa21.77■■□□□ 1.08
TPM1-201ENST00000267996 OVOS2Q6IE36 1432 aa21.77■■□□□ 1.08
TPM1-201ENST00000267996 NGDNQ8NEJ9 315 aaKnown RBP21.77■■□□□ 1.08
TPM1-201ENST00000267996 STRCP1A6NGW2 1772 aa21.77■■□□□ 1.08
TPM1-201ENST00000267996 NCOA3Q9Y6Q9 1424 aa21.76■■□□□ 1.07
TPM1-201ENST00000267996 SENP3-EIF4A1A0A087X0R7 540 aa21.75■■□□□ 1.07
TPM1-201ENST00000267996 PDE3BQ13370 1112 aa21.75■■□□□ 1.07
TPM1-201ENST00000267996 POLKQ9UBT6 870 aa21.75■■□□□ 1.07
TPM1-201ENST00000267996 NUDCQ9Y266 331 aa21.74■■□□□ 1.07
TPM1-201ENST00000267996 MAP2P11137 1827 aaKnown RBP21.73■■□□□ 1.07
TPM1-201ENST00000267996 USP31Q70CQ4 1352 aa21.73■■□□□ 1.07
TPM1-201ENST00000267996 PHF8Q9UPP1 1060 aa21.73■■□□□ 1.07
TPM1-201ENST00000267996 C14orf37Q86TY3 774 aa21.72■■□□□ 1.07
TPM1-201ENST00000267996 NGEFQ8N5V2 710 aa21.72■■□□□ 1.07
TPM1-201ENST00000267996 C19orf44Q9H6X5 657 aa21.72■■□□□ 1.07
TPM1-201ENST00000267996 CCDC146Q8IYE0 955 aa21.71■■□□□ 1.07
TPM1-201ENST00000267996 CDK12Q9NYV4 1490 aaPredicted RBP21.71■■□□□ 1.07
TPM1-201ENST00000267996 ZNF521Q96K83 1311 aa21.7■■□□□ 1.06
TPM1-201ENST00000267996 FBLN1P23142 703 aa21.7■■□□□ 1.06
TPM1-201ENST00000267996 TMEM94Q12767 1356 aa21.7■■□□□ 1.06
TPM1-201ENST00000267996 SALL2Q9Y467 1007 aaPredicted RBP21.69■■□□□ 1.06
TPM1-201ENST00000267996 PIK3C2AO00443 1686 aa21.69■■□□□ 1.06
TPM1-201ENST00000267996 DCCP43146 1447 aa21.69■■□□□ 1.06
TPM1-201ENST00000267996 USP54Q70EL1 1684 aa21.68■■□□□ 1.06
TPM1-201ENST00000267996 APAF1O14727 1248 aa21.68■■□□□ 1.06
TPM1-201ENST00000267996 DIAPH1O60610 1272 aaKnown RBP21.68■■□□□ 1.06
TPM1-201ENST00000267996 RUNDC1Q96C34 613 aa21.68■■□□□ 1.06
TPM1-201ENST00000267996 EMILIN1Q9Y6C2 1016 aa21.67■■□□□ 1.06
TPM1-201ENST00000267996 IQSEC2Q5JU85 1478 aa21.66■■□□□ 1.06
TPM1-201ENST00000267996 LRRC7Q96NW7 1537 aa21.66■■□□□ 1.06
TPM1-201ENST00000267996 U2AF1L5P0DN76 240 aaPredicted RBP21.66■■□□□ 1.06
TPM1-201ENST00000267996 U2AF1Q01081 240 aaKnown RBP eCLIP21.66■■□□□ 1.066e-9■■■■□ 21.7
TPM1-201ENST00000267996 ESCO1Q5FWF5 840 aa21.66■■□□□ 1.06
TPM1-201ENST00000267996 NCBP3Q53F19 620 aaKnown RBP21.65■■□□□ 1.06
TPM1-201ENST00000267996 SUPT16HQ9Y5B9 1047 aaKnown RBP21.65■■□□□ 1.06
TPM1-201ENST00000267996 C1orf167Q5SNV9 1468 aa21.65■■□□□ 1.06
TPM1-201ENST00000267996 MARF1Q9Y4F3 1742 aaKnown RBP21.63■■□□□ 1.05
TPM1-201ENST00000267996 RRS1Q15050 365 aaKnown RBP21.63■■□□□ 1.05
TPM1-201ENST00000267996 CDCA7LQ96GN5 454 aa21.63■■□□□ 1.05
TPM1-201ENST00000267996 ORAI2Q96SN7 254 aa21.63■■□□□ 1.05
TPM1-201ENST00000267996 PPM1GO15355 546 aaPredicted RBP21.62■■□□□ 1.05
TPM1-201ENST00000267996 MST1RQ04912 1400 aa21.62■■□□□ 1.05
TPM1-201ENST00000267996 KIF1AQ12756 1690 aa21.61■■□□□ 1.05
TPM1-201ENST00000267996 U2SURPO15042 1029 aaKnown RBP21.61■■□□□ 1.05
TPM1-201ENST00000267996 IL13P35225 146 aa21.61■■□□□ 1.05
TPM1-201ENST00000267996 PLEKHF1Q96S99 279 aa21.61■■□□□ 1.05
TPM1-201ENST00000267996 PHF23Q9BUL5 403 aaPredicted RBP21.6■■□□□ 1.05
TPM1-201ENST00000267996 XIRP1Q702N8 1843 aaKnown RBP21.6■■□□□ 1.05
TPM1-201ENST00000267996 ATF3P18847 181 aa21.6■■□□□ 1.05
TPM1-201ENST00000267996 TCP11L2Q8N4U5 519 aa21.6■■□□□ 1.05
TPM1-201ENST00000267996 NLRP6P59044 892 aa21.59■■□□□ 1.05
TPM1-201ENST00000267996 PSME1Q06323 249 aa21.59■■□□□ 1.05
TPM1-201ENST00000267996 PEAK1Q9H792 1746 aa21.58■■□□□ 1.05
TPM1-201ENST00000267996 NEFLP07196 543 aa21.58■■□□□ 1.05
TPM1-201ENST00000267996 GOLGA2Q08379 1002 aa21.58■■□□□ 1.05
TPM1-201ENST00000267996 RNF123Q5XPI4 1314 aa21.58■■□□□ 1.04
TPM1-201ENST00000267996 FCHSD2O94868 740 aa21.57■■□□□ 1.04
TPM1-201ENST00000267996 CCDC27Q2M243 656 aa21.57■■□□□ 1.04
TPM1-201ENST00000267996 CADPS2Q86UW7 1296 aa21.57■■□□□ 1.04
TPM1-201ENST00000267996 ABTB2Q8N961 1025 aa21.57■■□□□ 1.04
TPM1-201ENST00000267996 PNNQ9H307 717 aaKnown RBP21.57■■□□□ 1.04
TPM1-201ENST00000267996 TRMT2AQ8IZ69 625 aaKnown RBP21.56■■□□□ 1.04
TPM1-201ENST00000267996 MSH6P52701 1360 aa21.56■■□□□ 1.04
TPM1-201ENST00000267996 FKBP8Q14318 412 aa21.56■■□□□ 1.04
TPM1-201ENST00000267996 WWC1Q8IX03 1113 aa21.56■■□□□ 1.04
TPM1-201ENST00000267996 MAP3K19Q56UN5 1328 aa21.56■■□□□ 1.04
TPM1-201ENST00000267996 PAK3O75914 559 aaPredicted RBP21.55■■□□□ 1.04
TPM1-201ENST00000267996 SLFN5Q08AF3 891 aa21.55■■□□□ 1.04
TPM1-201ENST00000267996 RSPH6AQ9H0K4 717 aa21.55■■□□□ 1.04
TPM1-201ENST00000267996 ZNF335Q9H4Z2 1342 aaPredicted RBP21.55■■□□□ 1.04
TPM1-201ENST00000267996 TRPM3Q9HCF6 1732 aaPredicted RBP21.54■■□□□ 1.04
TPM1-201ENST00000267996 SBNO1A3KN83 1393 aa21.54■■□□□ 1.04
TPM1-201ENST00000267996 KIF24Q5T7B8 1368 aa21.54■■□□□ 1.04
TPM1-201ENST00000267996 FOXO3O43524 673 aa21.54■■□□□ 1.04
TPM1-201ENST00000267996 DMRT2Q9Y5R5 561 aa21.54■■□□□ 1.04
TPM1-201ENST00000267996 DUSP27Q5VZP5 1158 aa21.53■■□□□ 1.04
TPM1-201ENST00000267996 EIF4A2Q14240 407 aaKnown RBP21.52■■□□□ 1.04
TPM1-201ENST00000267996 FLT4P35916 1363 aa21.51■■□□□ 1.03
TPM1-201ENST00000267996 RRP7AQ9Y3A4 280 aaKnown RBP21.51■■□□□ 1.03
TPM1-201ENST00000267996 E9PSI1 815 aa21.5■■□□□ 1.03
TPM1-201ENST00000267996 TMPOP42166 694 aaKnown RBP21.5■■□□□ 1.03
TPM1-201ENST00000267996 HSP90AB2PQ58FF8 381 aa21.5■■□□□ 1.03
TPM1-201ENST00000267996 NUTM2GQ5VZR2 741 aa21.5■■□□□ 1.03
TPM1-201ENST00000267996 KRT28Q7Z3Y7 464 aa21.5■■□□□ 1.03
TPM1-201ENST00000267996 WDR63Q8IWG1 891 aa21.5■■□□□ 1.03
TPM1-201ENST00000267996 MAPK8IP3Q9UPT6 1336 aa21.5■■□□□ 1.03
TPM1-201ENST00000267996 SPINK5Q9NQ38 1064 aaPredicted RBP21.5■■□□□ 1.03
TPM1-201ENST00000267996 RGPD1P0DJD0 1748 aa21.49■■□□□ 1.03
TPM1-201ENST00000267996 NFAT5O94916 1531 aa21.49■■□□□ 1.03
TPM1-201ENST00000267996 SOX12O15370 315 aa21.49■■□□□ 1.03
Retrieved 100 of 20,778 RNA–protein pairs in 9.9 ms