RNA–Protein interactions for RNA: ENST00000265560.8

USP4-201, Transcript of ubiquitin specific peptidase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP4, Length 3,126 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-201ENST00000265560 XRN1Q8IZH2 1706 aaKnown RBP21.85■■□□□ 1.09
USP4-201ENST00000265560 POLKQ9UBT6 870 aa21.85■■□□□ 1.09
USP4-201ENST00000265560 COG3Q96JB2 828 aa21.85■■□□□ 1.09
USP4-201ENST00000265560 EDC4Q6P2E9 1401 aaKnown RBP21.84■■□□□ 1.09
USP4-201ENST00000265560 SMG6Q86US8 1419 aaKnown RBP21.84■■□□□ 1.09
USP4-201ENST00000265560 TTC21BQ7Z4L5 1316 aa21.84■■□□□ 1.09
USP4-201ENST00000265560 ZNF692Q9BU19 519 aaPredicted RBP21.84■■□□□ 1.09
USP4-201ENST00000265560 DMRT2Q9Y5R5 561 aa21.84■■□□□ 1.09
USP4-201ENST00000265560 CDC42BPGQ6DT37 1551 aa21.84■■□□□ 1.09
USP4-201ENST00000265560 PLEKHG3A1L390 1219 aa21.83■■□□□ 1.09
USP4-201ENST00000265560 CHD2O14647 1828 aaKnown RBP21.83■■□□□ 1.08
USP4-201ENST00000265560 PAK3O75914 559 aaPredicted RBP21.82■■□□□ 1.08
USP4-201ENST00000265560 PROSER2Q86WR7 435 aaPredicted RBP21.82■■□□□ 1.08
USP4-201ENST00000265560 KIF20BQ96Q89 1820 aa21.82■■□□□ 1.08
USP4-201ENST00000265560 PIK3R4Q99570 1358 aa21.82■■□□□ 1.08
USP4-201ENST00000265560 SPINK5Q9NQ38 1064 aaPredicted RBP21.82■■□□□ 1.08
USP4-201ENST00000265560 ADGRB2O60241 1585 aa21.81■■□□□ 1.08
USP4-201ENST00000265560 SHPRHQ149N8 1683 aa21.8■■□□□ 1.08
USP4-201ENST00000265560 XPCQ01831 940 aaPredicted RBP21.8■■□□□ 1.08
USP4-201ENST00000265560 MAP2P11137 1827 aaKnown RBP21.8■■□□□ 1.08
USP4-201ENST00000265560 ESCO1Q5FWF5 840 aa21.8■■□□□ 1.08
USP4-201ENST00000265560 TCP11L2Q8N4U5 519 aa21.8■■□□□ 1.08
USP4-201ENST00000265560 ITSN1Q15811 1721 aa21.79■■□□□ 1.08
USP4-201ENST00000265560 DIAPH1O60610 1272 aaKnown RBP21.78■■□□□ 1.08
USP4-201ENST00000265560 USP6P35125 1406 aa21.78■■□□□ 1.08
USP4-201ENST00000265560 HMOX1P09601 288 aa21.78■■□□□ 1.08
USP4-201ENST00000265560 ORAI2Q96SN7 254 aa21.77■■□□□ 1.08
USP4-201ENST00000265560 AKAP12Q02952 1782 aa21.76■■□□□ 1.07
USP4-201ENST00000265560 RUNDC1Q96C34 613 aa21.76■■□□□ 1.07
USP4-201ENST00000265560 MON2Q7Z3U7 1717 aa21.76■■□□□ 1.07
USP4-201ENST00000265560 ANKRD26Q9UPS8 1709 aa21.76■■□□□ 1.07
USP4-201ENST00000265560 NALCNQ8IZF0 1738 aa21.75■■□□□ 1.07
USP4-201ENST00000265560 GOLGA2Q08379 1002 aa21.74■■□□□ 1.07
USP4-201ENST00000265560 PHF8Q9UPP1 1060 aa21.74■■□□□ 1.07
USP4-201ENST00000265560 NLRP6P59044 892 aa21.73■■□□□ 1.07
USP4-201ENST00000265560 TOPAZ1Q8N9V7 1692 aa21.73■■□□□ 1.07
USP4-201ENST00000265560 FOXO3O43524 673 aa21.73■■□□□ 1.07
USP4-201ENST00000265560 PDE3BQ13370 1112 aa21.73■■□□□ 1.07
USP4-201ENST00000265560 RCAN3Q9UKA8 241 aa21.73■■□□□ 1.07
USP4-201ENST00000265560 PLIN1O60240 522 aa21.72■■□□□ 1.07
USP4-201ENST00000265560 ZNF521Q96K83 1311 aa21.72■■□□□ 1.07
USP4-201ENST00000265560 INSRP06213 1382 aa21.72■■□□□ 1.07
USP4-201ENST00000265560 WWC1Q8IX03 1113 aa21.71■■□□□ 1.07
USP4-201ENST00000265560 ABTB2Q8N961 1025 aa21.71■■□□□ 1.07
USP4-201ENST00000265560 DUSP27Q5VZP5 1158 aa21.7■■□□□ 1.06
USP4-201ENST00000265560 LMOD2Q6P5Q4 547 aa21.7■■□□□ 1.06
USP4-201ENST00000265560 COL3A1P02461 1466 aaPredicted RBP21.7■■□□□ 1.06
USP4-201ENST00000265560 HSP90AB2PQ58FF8 381 aa21.7■■□□□ 1.06
USP4-201ENST00000265560 PSME1Q06323 249 aa21.69■■□□□ 1.06
USP4-201ENST00000265560 DDX17Q92841 729 aaKnown RBP21.69■■□□□ 1.06
USP4-201ENST00000265560 ADGRL3Q9HAR2 1447 aa21.68■■□□□ 1.06
USP4-201ENST00000265560 PNPLA6Q8IY17 1366 aa21.67■■□□□ 1.06
USP4-201ENST00000265560 ZBTB7CA1YPR0 619 aa21.67■■□□□ 1.06
USP4-201ENST00000265560 SLFN5Q08AF3 891 aa21.67■■□□□ 1.06
USP4-201ENST00000265560 FMN2Q9NZ56 1722 aa21.67■■□□□ 1.06
USP4-201ENST00000265560 PRKAR2BP31323 418 aa21.67■■□□□ 1.06
USP4-201ENST00000265560 PLEKHF1Q96S99 279 aa21.66■■□□□ 1.06
USP4-201ENST00000265560 SSH2Q76I76 1423 aa21.66■■□□□ 1.06
USP4-201ENST00000265560 PHACTR3Q96KR7 559 aa21.66■■□□□ 1.06
USP4-201ENST00000265560 MAPK8IP3Q9UPT6 1336 aa21.66■■□□□ 1.06
USP4-201ENST00000265560 IL13P35225 146 aa21.65■■□□□ 1.06
USP4-201ENST00000265560 TMEM94Q12767 1356 aa21.65■■□□□ 1.06
USP4-201ENST00000265560 NRKQ7Z2Y5 1582 aa21.64■■□□□ 1.05
USP4-201ENST00000265560 AEBP1Q8IUX7 1158 aa21.64■■□□□ 1.05
USP4-201ENST00000265560 OVOS2A0A0J9YW53 1432 aa21.64■■□□□ 1.05
USP4-201ENST00000265560 OVOS2Q6IE36 1432 aa21.64■■□□□ 1.05
USP4-201ENST00000265560 ANKARQ7Z5J8 1434 aa21.63■■□□□ 1.05
USP4-201ENST00000265560 MAP3K19Q56UN5 1328 aa21.63■■□□□ 1.05
USP4-201ENST00000265560 B4GALNT3Q6L9W6 998 aa21.63■■□□□ 1.05
USP4-201ENST00000265560 C19orf44Q9H6X5 657 aa21.63■■□□□ 1.05
USP4-201ENST00000265560 LMTK3Q96Q04 1460 aa21.63■■□□□ 1.05
USP4-201ENST00000265560 TMPOP42166 694 aaKnown RBP21.62■■□□□ 1.05
USP4-201ENST00000265560 STRCP1A6NGW2 1772 aa21.62■■□□□ 1.05
USP4-201ENST00000265560 TTC21AQ8NDW8 1320 aa21.62■■□□□ 1.05
USP4-201ENST00000265560 RIPK4P57078 832 aa21.62■■□□□ 1.05
USP4-201ENST00000265560 EIF4A2Q14240 407 aaKnown RBP21.62■■□□□ 1.05
USP4-201ENST00000265560 LTV1Q96GA3 475 aaPredicted RBP21.62■■□□□ 1.05
USP4-201ENST00000265560 RRP1P56182 461 aaKnown RBP21.61■■□□□ 1.05
USP4-201ENST00000265560 RSPH6AQ9H0K4 717 aa21.61■■□□□ 1.05
USP4-201ENST00000265560 AATKQ6ZMQ8 1374 aa21.61■■□□□ 1.05
USP4-201ENST00000265560 ZNF335Q9H4Z2 1342 aaPredicted RBP21.61■■□□□ 1.05
USP4-201ENST00000265560 ATF3P18847 181 aa21.6■■□□□ 1.05
USP4-201ENST00000265560 AMPHP49418 695 aa21.6■■□□□ 1.05
USP4-201ENST00000265560 THUMPD2Q9BTF0 503 aaKnown RBP21.6■■□□□ 1.05
USP4-201ENST00000265560 SULT6B1Q6IMI4 303 aa21.59■■□□□ 1.05
USP4-201ENST00000265560 TSR2Q969E8 191 aaKnown RBP21.59■■□□□ 1.05
USP4-201ENST00000265560 PIK3C2AO00443 1686 aa21.58■■□□□ 1.05
USP4-201ENST00000265560 IQSEC2Q5JU85 1478 aa21.58■■□□□ 1.05
USP4-201ENST00000265560 E9PSI1 815 aa21.58■■□□□ 1.05
USP4-201ENST00000265560 FCHSD2O94868 740 aa21.58■■□□□ 1.05
USP4-201ENST00000265560 TRIM35Q9UPQ4 493 aa21.58■■□□□ 1.05
USP4-201ENST00000265560 RNF123Q5XPI4 1314 aa21.58■■□□□ 1.04
USP4-201ENST00000265560 BCAR3O75815 825 aa21.57■■□□□ 1.04
USP4-201ENST00000265560 C20orf194Q5TEA3 1177 aa21.56■■□□□ 1.04
USP4-201ENST00000265560 TRMT2AQ8IZ69 625 aaKnown RBP21.56■■□□□ 1.04
USP4-201ENST00000265560 CDK12Q9NYV4 1490 aaPredicted RBP21.56■■□□□ 1.04
USP4-201ENST00000265560 LAS1LQ9Y4W2 734 aaKnown RBP21.55■■□□□ 1.04
USP4-201ENST00000265560 LRRC7Q96NW7 1537 aa21.55■■□□□ 1.04
USP4-201ENST00000265560 EXOC6Q8TAG9 804 aa21.55■■□□□ 1.04
USP4-201ENST00000265560 USP31Q70CQ4 1352 aa21.54■■□□□ 1.04
Retrieved 100 of 20,778 RNA–protein pairs in 107.9 ms