RNA–Protein interactions for RNA: ENST00000262554.6

SPTLC1-201, Transcript of serine palmitoyltransferase long chain base subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SPTLC1, Length 1,894 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTLC1-201ENST00000262554 ADAMTS13Q76LX8 1427 aa16.88■□□□□ 0.29
SPTLC1-201ENST00000262554 ADGRB2O60241 1585 aa16.88■□□□□ 0.29
SPTLC1-201ENST00000262554 CEBPAP49715 358 aaPredicted RBP16.88■□□□□ 0.29
SPTLC1-201ENST00000262554 CPSF1Q10570 1443 aaKnown RBP16.87■□□□□ 0.29
SPTLC1-201ENST00000262554 EDC4Q6P2E9 1401 aaKnown RBP16.87■□□□□ 0.29
SPTLC1-201ENST00000262554 WDR63Q8IWG1 891 aa16.87■□□□□ 0.29
SPTLC1-201ENST00000262554 RRP7AQ9Y3A4 280 aaKnown RBP16.87■□□□□ 0.29
SPTLC1-201ENST00000262554 EID1Q9Y6B2 187 aa16.87■□□□□ 0.29
SPTLC1-201ENST00000262554 CDC42BPGQ6DT37 1551 aa16.87■□□□□ 0.29
SPTLC1-201ENST00000262554 SUGP2Q8IX01 1082 aaKnown RBP eCLIP16.86■□□□□ 0.297e-7■■■□□ 18.1
SPTLC1-201ENST00000262554 ITSN1Q15811 1721 aa16.86■□□□□ 0.29
SPTLC1-201ENST00000262554 TRHP20396 242 aaPredicted RBP16.86■□□□□ 0.29
SPTLC1-201ENST00000262554 LTKP29376 864 aa16.86■□□□□ 0.29
SPTLC1-201ENST00000262554 C20orf194Q5TEA3 1177 aa16.86■□□□□ 0.29
SPTLC1-201ENST00000262554 NUDT16Q96DE0 195 aaKnown RBP16.86■□□□□ 0.29
SPTLC1-201ENST00000262554 MON2Q7Z3U7 1717 aa16.85■□□□□ 0.29
SPTLC1-201ENST00000262554 AKAP12Q02952 1782 aa16.85■□□□□ 0.29
SPTLC1-201ENST00000262554 SLIT1O75093 1534 aa16.85■□□□□ 0.29
SPTLC1-201ENST00000262554 U2SURPO15042 1029 aaKnown RBP16.85■□□□□ 0.29
SPTLC1-201ENST00000262554 CCDC61Q9Y6R9 512 aa16.84■□□□□ 0.29
SPTLC1-201ENST00000262554 PNPLA6Q8IY17 1366 aa16.84■□□□□ 0.29
SPTLC1-201ENST00000262554 DIAPH1O60610 1272 aaKnown RBP16.84■□□□□ 0.29
SPTLC1-201ENST00000262554 MAP2P11137 1827 aaKnown RBP16.84■□□□□ 0.29
SPTLC1-201ENST00000262554 ROBO2Q9HCK4 1378 aa16.84■□□□□ 0.29
SPTLC1-201ENST00000262554 ARHGAP23Q9P227 1491 aa16.83■□□□□ 0.29
SPTLC1-201ENST00000262554 DCAF8L1A6NGE4 600 aa16.83■□□□□ 0.28
SPTLC1-201ENST00000262554 PNNQ9H307 717 aaKnown RBP16.83■□□□□ 0.28
SPTLC1-201ENST00000262554 FANCIQ9NVI1 1328 aa16.82■□□□□ 0.28
SPTLC1-201ENST00000262554 MAPK8IP3Q9UPT6 1336 aa16.82■□□□□ 0.28
SPTLC1-201ENST00000262554 SIPA1L2Q9P2F8 1722 aaPredicted RBP16.81■□□□□ 0.28
SPTLC1-201ENST00000262554 PLEKHF1Q96S99 279 aa16.81■□□□□ 0.28
SPTLC1-201ENST00000262554 BCAR3O75815 825 aa16.8■□□□□ 0.28
SPTLC1-201ENST00000262554 ZNF692Q9BU19 519 aaPredicted RBP16.8■□□□□ 0.28
SPTLC1-201ENST00000262554 MYH16Q9H6N6 1097 aa16.8■□□□□ 0.28
SPTLC1-201ENST00000262554 THEMISQ8N1K5 641 aaPredicted RBP16.8■□□□□ 0.28
SPTLC1-201ENST00000262554 DIP2AQ14689 1571 aa16.79■□□□□ 0.28
SPTLC1-201ENST00000262554 POLKQ9UBT6 870 aa16.79■□□□□ 0.28
SPTLC1-201ENST00000262554 TOPAZ1Q8N9V7 1692 aa16.79■□□□□ 0.28
SPTLC1-201ENST00000262554 SLC26A8Q96RN1 970 aa16.78■□□□□ 0.28
SPTLC1-201ENST00000262554 PRR36Q9H6K5 1346 aa16.78■□□□□ 0.28
SPTLC1-201ENST00000262554 TCERG1O14776 1098 aaKnown RBP16.78■□□□□ 0.28
SPTLC1-201ENST00000262554 TMPOP42166 694 aaKnown RBP16.78■□□□□ 0.28
SPTLC1-201ENST00000262554 NME9Q86XW9 330 aa16.78■□□□□ 0.28
SPTLC1-201ENST00000262554 TBX22Q9Y458 520 aa16.78■□□□□ 0.28
SPTLC1-201ENST00000262554 PTPRUQ92729 1446 aa16.77■□□□□ 0.28
SPTLC1-201ENST00000262554 NCKAP5LQ9HCH0 1330 aa16.77■□□□□ 0.28
SPTLC1-201ENST00000262554 PPM1GO15355 546 aaPredicted RBP16.77■□□□□ 0.27
SPTLC1-201ENST00000262554 MYCNP04198 464 aaPredicted RBP16.77■□□□□ 0.27
SPTLC1-201ENST00000262554 COG3Q96JB2 828 aa16.77■□□□□ 0.27
SPTLC1-201ENST00000262554 AATKQ6ZMQ8 1374 aa16.77■□□□□ 0.27
SPTLC1-201ENST00000262554 FCHSD2O94868 740 aa16.76■□□□□ 0.27
SPTLC1-201ENST00000262554 PDE3AQ14432 1141 aa16.76■□□□□ 0.27
SPTLC1-201ENST00000262554 CANXP27824 592 aaKnown RBP16.76■□□□□ 0.27
SPTLC1-201ENST00000262554 CDK12Q9NYV4 1490 aaPredicted RBP16.75■□□□□ 0.27
SPTLC1-201ENST00000262554 PTCH1Q13635 1447 aa16.74■□□□□ 0.27
SPTLC1-201ENST00000262554 LRRC7Q96NW7 1537 aa16.74■□□□□ 0.27
SPTLC1-201ENST00000262554 NEFMP07197 916 aa16.74■□□□□ 0.27
SPTLC1-201ENST00000262554 RARSP54136 660 aaKnown RBP16.74■□□□□ 0.27
SPTLC1-201ENST00000262554 AMOTL2Q9Y2J4 779 aa16.74■□□□□ 0.27
SPTLC1-201ENST00000262554 CENPQQ7L2Z9 268 aaPredicted RBP16.73■□□□□ 0.27
SPTLC1-201ENST00000262554 NRKQ7Z2Y5 1582 aa16.73■□□□□ 0.27
SPTLC1-201ENST00000262554 PLEKHG3A1L390 1219 aa16.73■□□□□ 0.27
SPTLC1-201ENST00000262554 FBLN1P23142 703 aa16.73■□□□□ 0.27
SPTLC1-201ENST00000262554 TRIM35Q9UPQ4 493 aa16.73■□□□□ 0.27
SPTLC1-201ENST00000262554 IL16Q14005 1332 aa16.72■□□□□ 0.27
SPTLC1-201ENST00000262554 KDM2BQ8NHM5 1336 aa16.72■□□□□ 0.27
SPTLC1-201ENST00000262554 CT47B1P0C2W7 299 aaPredicted RBP16.72■□□□□ 0.27
SPTLC1-201ENST00000262554 MS4A1P11836 297 aa16.72■□□□□ 0.27
SPTLC1-201ENST00000262554 RIPK4P57078 832 aa16.72■□□□□ 0.27
SPTLC1-201ENST00000262554 ZRANB1Q9UGI0 708 aa16.72■□□□□ 0.27
SPTLC1-201ENST00000262554 EMILIN1Q9Y6C2 1016 aa16.72■□□□□ 0.27
SPTLC1-201ENST00000262554 CEP170BQ9Y4F5 1589 aaPredicted RBP16.72■□□□□ 0.27
SPTLC1-201ENST00000262554 RSPH6AQ9H0K4 717 aa16.71■□□□□ 0.27
SPTLC1-201ENST00000262554 RIMS1Q86UR5 1692 aaKnown RBP16.71■□□□□ 0.27
SPTLC1-201ENST00000262554 ACEP12821 1306 aa16.71■□□□□ 0.27
SPTLC1-201ENST00000262554 XRN1Q8IZH2 1706 aaKnown RBP16.7■□□□□ 0.26
SPTLC1-201ENST00000262554 PRKAR2BP31323 418 aa16.7■□□□□ 0.26
SPTLC1-201ENST00000262554 FRAT1Q92837 279 aaPredicted RBP16.69■□□□□ 0.26
SPTLC1-201ENST00000262554 TTC21BQ7Z4L5 1316 aa16.69■□□□□ 0.26
SPTLC1-201ENST00000262554 USP6P35125 1406 aa16.69■□□□□ 0.26
SPTLC1-201ENST00000262554 IL13P35225 146 aa16.69■□□□□ 0.26
SPTLC1-201ENST00000262554 NUTM2FA1L443 756 aa16.68■□□□□ 0.26
SPTLC1-201ENST00000262554 TSR2Q969E8 191 aaKnown RBP16.67■□□□□ 0.26
SPTLC1-201ENST00000262554 PANK1Q8TE04 598 aa16.67■□□□□ 0.26
SPTLC1-201ENST00000262554 NALCNQ8IZF0 1738 aa16.67■□□□□ 0.26
SPTLC1-201ENST00000262554 PIK3R4Q99570 1358 aa16.67■□□□□ 0.26
SPTLC1-201ENST00000262554 HMOX1P09601 288 aa16.66■□□□□ 0.26
SPTLC1-201ENST00000262554 AAMPQ13685 434 aa16.66■□□□□ 0.26
SPTLC1-201ENST00000262554 RRS1Q15050 365 aaKnown RBP16.66■□□□□ 0.26
SPTLC1-201ENST00000262554 RGPD8O14715 1765 aaPredicted RBP16.66■□□□□ 0.26
SPTLC1-201ENST00000262554 EXOSC9Q06265 439 aaKnown RBP16.65■□□□□ 0.26
SPTLC1-201ENST00000262554 NFE2L2Q16236 605 aa16.65■□□□□ 0.26
SPTLC1-201ENST00000262554 COG6Q9Y2V7 657 aa16.65■□□□□ 0.26
SPTLC1-201ENST00000262554 OVOS2A0A0J9YW53 1432 aa16.65■□□□□ 0.26
SPTLC1-201ENST00000262554 OVOS2Q6IE36 1432 aa16.65■□□□□ 0.26
SPTLC1-201ENST00000262554 ZNF142P52746 1687 aaPredicted RBP16.65■□□□□ 0.26
SPTLC1-201ENST00000262554 BCL2L13Q9BXK5 485 aa16.65■□□□□ 0.26
SPTLC1-201ENST00000262554 CLUAP1Q96AJ1 413 aa16.64■□□□□ 0.25
SPTLC1-201ENST00000262554 TTC21AQ8NDW8 1320 aa16.63■□□□□ 0.25
SPTLC1-201ENST00000262554 PDE4AP27815 886 aa16.63■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 52.3 ms