RNA–Protein interactions for RNA: ENST00000225726.9

CCDC47-201, Transcript of coiled-coil domain containing 47, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC47, Length 3,466 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC47-201ENST00000225726 NWD1Q149M9 1564 aa19.74■□□□□ 0.75
CCDC47-201ENST00000225726 ACEP12821 1306 aa19.73■□□□□ 0.75
CCDC47-201ENST00000225726 RGPD8O14715 1765 aaPredicted RBP19.72■□□□□ 0.75
CCDC47-201ENST00000225726 CCDC146Q8IYE0 955 aa19.72■□□□□ 0.75
CCDC47-201ENST00000225726 USP6P35125 1406 aa19.72■□□□□ 0.75
CCDC47-201ENST00000225726 NUTM2FA1L443 756 aa19.71■□□□□ 0.75
CCDC47-201ENST00000225726 NME9Q86XW9 330 aa19.71■□□□□ 0.75
CCDC47-201ENST00000225726 NGEFQ8N5V2 710 aa19.71■□□□□ 0.75
CCDC47-201ENST00000225726 PNPLA6Q8IY17 1366 aa19.7■□□□□ 0.74
CCDC47-201ENST00000225726 AATKQ6ZMQ8 1374 aa19.69■□□□□ 0.74
CCDC47-201ENST00000225726 TTC21BQ7Z4L5 1316 aa19.69■□□□□ 0.74
CCDC47-201ENST00000225726 ZNF521Q96K83 1311 aa19.69■□□□□ 0.74
CCDC47-201ENST00000225726 COG3Q96JB2 828 aa19.68■□□□□ 0.74
CCDC47-201ENST00000225726 MAP2P11137 1827 aaKnown RBP19.68■□□□□ 0.74
CCDC47-201ENST00000225726 SSH2Q76I76 1423 aa19.68■□□□□ 0.74
CCDC47-201ENST00000225726 ADGRL3Q9HAR2 1447 aa19.68■□□□□ 0.74
CCDC47-201ENST00000225726 APAF1O14727 1248 aa19.67■□□□□ 0.74
CCDC47-201ENST00000225726 RUNDC1Q96C34 613 aa19.67■□□□□ 0.74
CCDC47-201ENST00000225726 IQSEC2Q5JU85 1478 aa19.67■□□□□ 0.74
CCDC47-201ENST00000225726 CDCA7LQ96GN5 454 aa19.66■□□□□ 0.74
CCDC47-201ENST00000225726 POLKQ9UBT6 870 aa19.65■□□□□ 0.74
CCDC47-201ENST00000225726 ZRANB1Q9UGI0 708 aa19.65■□□□□ 0.74
CCDC47-201ENST00000225726 RNF123Q5XPI4 1314 aa19.65■□□□□ 0.74
CCDC47-201ENST00000225726 TTC21AQ8NDW8 1320 aa19.65■□□□□ 0.74
CCDC47-201ENST00000225726 OVOS2A0A0J9YW53 1432 aa19.64■□□□□ 0.74
CCDC47-201ENST00000225726 OVOS2Q6IE36 1432 aa19.64■□□□□ 0.74
CCDC47-201ENST00000225726 CDK12Q9NYV4 1490 aaPredicted RBP19.64■□□□□ 0.73
CCDC47-201ENST00000225726 ERICH6BQ5W0A0 696 aa19.64■□□□□ 0.73
CCDC47-201ENST00000225726 U2AF1L5P0DN76 240 aaPredicted RBP19.63■□□□□ 0.73
CCDC47-201ENST00000225726 U2AF1Q01081 240 aaKnown RBP eCLIP19.63■□□□□ 0.73
CCDC47-201ENST00000225726 PMFBP1Q8TBY8 1022 aa19.63■□□□□ 0.73
CCDC47-201ENST00000225726 DIAPH1O60610 1272 aaKnown RBP19.63■□□□□ 0.73
CCDC47-201ENST00000225726 NGDNQ8NEJ9 315 aaKnown RBP19.63■□□□□ 0.73
CCDC47-201ENST00000225726 GOLGA2Q08379 1002 aa19.62■□□□□ 0.73
CCDC47-201ENST00000225726 NCBP3Q53F19 620 aaKnown RBP19.6■□□□□ 0.73
CCDC47-201ENST00000225726 KDM4FA0A1W2PPD8 638 aa19.6■□□□□ 0.73
CCDC47-201ENST00000225726 U2SURPO15042 1029 aaKnown RBP19.59■□□□□ 0.73
CCDC47-201ENST00000225726 IRX6P78412 446 aaPredicted RBP19.59■□□□□ 0.73
CCDC47-201ENST00000225726 USP31Q70CQ4 1352 aa19.59■□□□□ 0.73
CCDC47-201ENST00000225726 FBLN1P23142 703 aa19.59■□□□□ 0.73
CCDC47-201ENST00000225726 TCP11L2Q8N4U5 519 aa19.59■□□□□ 0.73
CCDC47-201ENST00000225726 RCAN3Q9UKA8 241 aa19.59■□□□□ 0.73
CCDC47-201ENST00000225726 EMILIN1Q9Y6C2 1016 aa19.59■□□□□ 0.73
CCDC47-201ENST00000225726 PIK3C2AO00443 1686 aa19.58■□□□□ 0.73
CCDC47-201ENST00000225726 USP54Q70EL1 1684 aa19.58■□□□□ 0.73
CCDC47-201ENST00000225726 SLFN5Q08AF3 891 aa19.57■□□□□ 0.72
CCDC47-201ENST00000225726 PPM1GO15355 546 aaPredicted RBP19.57■□□□□ 0.72
CCDC47-201ENST00000225726 RBM33Q96EV2 1170 aaKnown RBP19.57■□□□□ 0.72
CCDC47-201ENST00000225726 DUSP27Q5VZP5 1158 aa19.57■□□□□ 0.72
CCDC47-201ENST00000225726 PNNQ9H307 717 aaKnown RBP19.57■□□□□ 0.72
CCDC47-201ENST00000225726 TRMT2AQ8IZ69 625 aaKnown RBP19.56■□□□□ 0.72
CCDC47-201ENST00000225726 PLEKHF1Q96S99 279 aa19.56■□□□□ 0.72
CCDC47-201ENST00000225726 PHF8Q9UPP1 1060 aa19.56■□□□□ 0.72
CCDC47-201ENST00000225726 CCDC27Q2M243 656 aa19.56■□□□□ 0.72
CCDC47-201ENST00000225726 C14orf37Q86TY3 774 aa19.55■□□□□ 0.72
CCDC47-201ENST00000225726 PROSER2Q86WR7 435 aaPredicted RBP19.55■□□□□ 0.72
CCDC47-201ENST00000225726 WWC1Q8IX03 1113 aa19.55■□□□□ 0.72
CCDC47-201ENST00000225726 LRRC7Q96NW7 1537 aa19.55■□□□□ 0.72
CCDC47-201ENST00000225726 PHF23Q9BUL5 403 aaPredicted RBP19.55■□□□□ 0.72
CCDC47-201ENST00000225726 LMTK3Q96Q04 1460 aa19.55■□□□□ 0.72
CCDC47-201ENST00000225726 E9PSI1 815 aa19.55■□□□□ 0.72
CCDC47-201ENST00000225726 RRS1Q15050 365 aaKnown RBP19.54■□□□□ 0.72
CCDC47-201ENST00000225726 STRCP1A6NGW2 1772 aa19.53■□□□□ 0.72
CCDC47-201ENST00000225726 IL13P35225 146 aa19.53■□□□□ 0.72
CCDC47-201ENST00000225726 FCHSD2O94868 740 aa19.52■□□□□ 0.72
CCDC47-201ENST00000225726 HSPA2P54652 639 aa19.52■□□□□ 0.72
CCDC47-201ENST00000225726 MAPK8IP3Q9UPT6 1336 aa19.52■□□□□ 0.72
CCDC47-201ENST00000225726 MARF1Q9Y4F3 1742 aaKnown RBP19.52■□□□□ 0.72
CCDC47-201ENST00000225726 RRP1P56182 461 aaKnown RBP19.52■□□□□ 0.72
CCDC47-201ENST00000225726 RRP7AQ9Y3A4 280 aaKnown RBP19.52■□□□□ 0.72
CCDC47-201ENST00000225726 NCOA3Q9Y6Q9 1424 aa19.51■□□□□ 0.71
CCDC47-201ENST00000225726 PEAK1Q9H792 1746 aa19.51■□□□□ 0.71
CCDC47-201ENST00000225726 WDR63Q8IWG1 891 aa19.51■□□□□ 0.71
CCDC47-201ENST00000225726 NEUROD2Q15784 382 aa19.5■□□□□ 0.71
CCDC47-201ENST00000225726 SPINK5Q9NQ38 1064 aaPredicted RBP19.5■□□□□ 0.71
CCDC47-201ENST00000225726 RSPH6AQ9H0K4 717 aa19.49■□□□□ 0.71
CCDC47-201ENST00000225726 STRCQ7RTU9 1775 aa19.49■□□□□ 0.71
CCDC47-201ENST00000225726 ESCO1Q5FWF5 840 aa19.49■□□□□ 0.71
CCDC47-201ENST00000225726 PPP4R2Q9NY27 417 aa19.49■□□□□ 0.71
CCDC47-201ENST00000225726 DMRT2Q9Y5R5 561 aa19.49■□□□□ 0.71
CCDC47-201ENST00000225726 KIF1AQ12756 1690 aa19.49■□□□□ 0.71
CCDC47-201ENST00000225726 TMPOP42166 694 aaKnown RBP19.48■□□□□ 0.71
CCDC47-201ENST00000225726 C19orf44Q9H6X5 657 aa19.48■□□□□ 0.71
CCDC47-201ENST00000225726 DCCP43146 1447 aa19.47■□□□□ 0.71
CCDC47-201ENST00000225726 NLRP6P59044 892 aa19.46■□□□□ 0.71
CCDC47-201ENST00000225726 TMEM94Q12767 1356 aa19.46■□□□□ 0.71
CCDC47-201ENST00000225726 SBNO1A3KN83 1393 aa19.45■□□□□ 0.7
CCDC47-201ENST00000225726 PRKAR2BP31323 418 aa19.45■□□□□ 0.7
CCDC47-201ENST00000225726 C1orf167Q5SNV9 1468 aa19.45■□□□□ 0.7
CCDC47-201ENST00000225726 NEFMP07197 916 aa19.45■□□□□ 0.7
CCDC47-201ENST00000225726 ABTB2Q8N961 1025 aa19.45■□□□□ 0.7
CCDC47-201ENST00000225726 MAP3K19Q56UN5 1328 aa19.44■□□□□ 0.7
CCDC47-201ENST00000225726 PAK3O75914 559 aaPredicted RBP19.44■□□□□ 0.7
CCDC47-201ENST00000225726 RGPD1P0DJD0 1748 aa19.44■□□□□ 0.7
CCDC47-201ENST00000225726 PSME1Q06323 249 aa19.44■□□□□ 0.7
CCDC47-201ENST00000225726 EIF4A2Q14240 407 aaKnown RBP19.44■□□□□ 0.7
CCDC47-201ENST00000225726 FLT4P35916 1363 aa19.44■□□□□ 0.7
CCDC47-201ENST00000225726 KIF24Q5T7B8 1368 aa19.43■□□□□ 0.7
CCDC47-201ENST00000225726 HMOX1P09601 288 aa19.43■□□□□ 0.7
CCDC47-201ENST00000225726 ORAI2Q96SN7 254 aa19.42■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 55.7 ms