RNA–Protein interactions for RNA: ENST00000224237.9

VIM-201, Transcript of vimentin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VIM, Length 1,868 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-201ENST00000224237 USP6P35125 1406 aa24.15■■□□□ 1.46
VIM-201ENST00000224237 NME9Q86XW9 330 aa24.15■■□□□ 1.46
VIM-201ENST00000224237 C14orf37Q86TY3 774 aa24.14■■□□□ 1.45
VIM-201ENST00000224237 PROSER2Q86WR7 435 aaPredicted RBP24.13■■□□□ 1.45
VIM-201ENST00000224237 ZRANB1Q9UGI0 708 aa24.13■■□□□ 1.45
VIM-201ENST00000224237 SMG6Q86US8 1419 aaKnown RBP24.12■■□□□ 1.45
VIM-201ENST00000224237 TTC21BQ7Z4L5 1316 aa24.1■■□□□ 1.45
VIM-201ENST00000224237 COG3Q96JB2 828 aa24.1■■□□□ 1.45
VIM-201ENST00000224237 SSH2Q76I76 1423 aa24.09■■□□□ 1.45
VIM-201ENST00000224237 PDE3BQ13370 1112 aa24.09■■□□□ 1.45
VIM-201ENST00000224237 NGDNQ8NEJ9 315 aaKnown RBP24.08■■□□□ 1.45
VIM-201ENST00000224237 NUDCQ9Y266 331 aa24.08■■□□□ 1.45
VIM-201ENST00000224237 COL3A1P02461 1466 aaPredicted RBP24.08■■□□□ 1.44
VIM-201ENST00000224237 AATKQ6ZMQ8 1374 aa24.07■■□□□ 1.44
VIM-201ENST00000224237 FBLN1P23142 703 aa24.07■■□□□ 1.44
VIM-201ENST00000224237 TTC21AQ8NDW8 1320 aa24.07■■□□□ 1.44
VIM-201ENST00000224237 SALL2Q9Y467 1007 aaPredicted RBP24.07■■□□□ 1.44
VIM-201ENST00000224237 PNPLA6Q8IY17 1366 aa24.06■■□□□ 1.44
VIM-201ENST00000224237 TMEM94Q12767 1356 aa24.06■■□□□ 1.44
VIM-201ENST00000224237 MAP2P11137 1827 aaKnown RBP24.05■■□□□ 1.44
VIM-201ENST00000224237 OVOS2A0A0J9YW53 1432 aa24.04■■□□□ 1.44
VIM-201ENST00000224237 OVOS2Q6IE36 1432 aa24.04■■□□□ 1.44
VIM-201ENST00000224237 CCDC146Q8IYE0 955 aa24.03■■□□□ 1.44
VIM-201ENST00000224237 NEFLP07196 543 aa24.02■■□□□ 1.44
VIM-201ENST00000224237 POLKQ9UBT6 870 aa24.02■■□□□ 1.44
VIM-201ENST00000224237 NGEFQ8N5V2 710 aa24.02■■□□□ 1.44
VIM-201ENST00000224237 PHF8Q9UPP1 1060 aa24.02■■□□□ 1.44
VIM-201ENST00000224237 ESCO1Q5FWF5 840 aa24■■□□□ 1.43
VIM-201ENST00000224237 SUPT16HQ9Y5B9 1047 aaKnown RBP24■■□□□ 1.43
VIM-201ENST00000224237 CDK12Q9NYV4 1490 aaPredicted RBP24■■□□□ 1.43
VIM-201ENST00000224237 ZNF335Q9H4Z2 1342 aaPredicted RBP23.99■■□□□ 1.43
VIM-201ENST00000224237 C19orf44Q9H6X5 657 aa23.99■■□□□ 1.43
VIM-201ENST00000224237 NCOA3Q9Y6Q9 1424 aa23.99■■□□□ 1.43
VIM-201ENST00000224237 APAF1O14727 1248 aa23.98■■□□□ 1.43
VIM-201ENST00000224237 DIAPH1O60610 1272 aaKnown RBP23.98■■□□□ 1.43
VIM-201ENST00000224237 RUNDC1Q96C34 613 aa23.98■■□□□ 1.43
VIM-201ENST00000224237 U2AF1L5P0DN76 240 aaPredicted RBP23.98■■□□□ 1.43
VIM-201ENST00000224237 U2AF1Q01081 240 aaKnown RBP eCLIP23.98■■□□□ 1.43
VIM-201ENST00000224237 ORAI2Q96SN7 254 aa23.98■■□□□ 1.43
VIM-201ENST00000224237 PIK3C2AO00443 1686 aa23.97■■□□□ 1.43
VIM-201ENST00000224237 XIRP1Q702N8 1843 aaKnown RBP23.97■■□□□ 1.43
VIM-201ENST00000224237 USP31Q70CQ4 1352 aa23.97■■□□□ 1.43
VIM-201ENST00000224237 ZNF521Q96K83 1311 aa23.96■■□□□ 1.43
VIM-201ENST00000224237 IQSEC2Q5JU85 1478 aa23.96■■□□□ 1.43
VIM-201ENST00000224237 EMILIN1Q9Y6C2 1016 aa23.96■■□□□ 1.43
VIM-201ENST00000224237 PPM1GO15355 546 aaPredicted RBP23.95■■□□□ 1.42
VIM-201ENST00000224237 C1orf167Q5SNV9 1468 aa23.95■■□□□ 1.42
VIM-201ENST00000224237 USP54Q70EL1 1684 aa23.94■■□□□ 1.42
VIM-201ENST00000224237 U2SURPO15042 1029 aaKnown RBP23.94■■□□□ 1.42
VIM-201ENST00000224237 DCCP43146 1447 aa23.94■■□□□ 1.42
VIM-201ENST00000224237 RRS1Q15050 365 aaKnown RBP23.94■■□□□ 1.42
VIM-201ENST00000224237 FKBP8Q14318 412 aa23.93■■□□□ 1.42
VIM-201ENST00000224237 LRRC7Q96NW7 1537 aa23.92■■□□□ 1.42
VIM-201ENST00000224237 MST1RQ04912 1400 aa23.92■■□□□ 1.42
VIM-201ENST00000224237 PAK3O75914 559 aaPredicted RBP23.92■■□□□ 1.42
VIM-201ENST00000224237 ATF3P18847 181 aa23.92■■□□□ 1.42
VIM-201ENST00000224237 CDCA7LQ96GN5 454 aa23.92■■□□□ 1.42
VIM-201ENST00000224237 SOX12O15370 315 aa23.91■■□□□ 1.42
VIM-201ENST00000224237 NUTM2GQ5VZR2 741 aa23.91■■□□□ 1.42
VIM-201ENST00000224237 GOLGA2Q08379 1002 aa23.9■■□□□ 1.42
VIM-201ENST00000224237 KIF1AQ12756 1690 aa23.9■■□□□ 1.42
VIM-201ENST00000224237 FOXO3O43524 673 aa23.9■■□□□ 1.42
VIM-201ENST00000224237 XPCQ01831 940 aaPredicted RBP23.9■■□□□ 1.42
VIM-201ENST00000224237 NCBP3Q53F19 620 aaKnown RBP23.9■■□□□ 1.42
VIM-201ENST00000224237 PNNQ9H307 717 aaKnown RBP23.9■■□□□ 1.42
VIM-201ENST00000224237 MARF1Q9Y4F3 1742 aaKnown RBP23.89■■□□□ 1.42
VIM-201ENST00000224237 TCP11L2Q8N4U5 519 aa23.89■■□□□ 1.41
VIM-201ENST00000224237 PSME1Q06323 249 aa23.88■■□□□ 1.41
VIM-201ENST00000224237 MSH6P52701 1360 aa23.88■■□□□ 1.41
VIM-201ENST00000224237 NLRP6P59044 892 aa23.87■■□□□ 1.41
VIM-201ENST00000224237 ABTB2Q8N961 1025 aa23.86■■□□□ 1.41
VIM-201ENST00000224237 PLEKHF1Q96S99 279 aa23.86■■□□□ 1.41
VIM-201ENST00000224237 IL13P35225 146 aa23.85■■□□□ 1.41
VIM-201ENST00000224237 FCHSD2O94868 740 aa23.85■■□□□ 1.41
VIM-201ENST00000224237 CCDC27Q2M243 656 aa23.85■■□□□ 1.41
VIM-201ENST00000224237 CADPS2Q86UW7 1296 aa23.85■■□□□ 1.41
VIM-201ENST00000224237 MAPK8IP3Q9UPT6 1336 aa23.84■■□□□ 1.41
VIM-201ENST00000224237 PEAK1Q9H792 1746 aa23.84■■□□□ 1.41
VIM-201ENST00000224237 WWC1Q8IX03 1113 aa23.83■■□□□ 1.41
VIM-201ENST00000224237 RNF123Q5XPI4 1314 aa23.83■■□□□ 1.41
VIM-201ENST00000224237 PHF23Q9BUL5 403 aaPredicted RBP23.83■■□□□ 1.4
VIM-201ENST00000224237 SLFN5Q08AF3 891 aa23.82■■□□□ 1.4
VIM-201ENST00000224237 DUSP27Q5VZP5 1158 aa23.82■■□□□ 1.4
VIM-201ENST00000224237 DMRT2Q9Y5R5 561 aa23.82■■□□□ 1.4
VIM-201ENST00000224237 DDX17Q92841 729 aaKnown RBP23.81■■□□□ 1.4
VIM-201ENST00000224237 RRP7AQ9Y3A4 280 aaKnown RBP23.81■■□□□ 1.4
VIM-201ENST00000224237 SBNO1A3KN83 1393 aa23.81■■□□□ 1.4
VIM-201ENST00000224237 TRPM3Q9HCF6 1732 aaPredicted RBP23.81■■□□□ 1.4
VIM-201ENST00000224237 E9PSI1 815 aa23.81■■□□□ 1.4
VIM-201ENST00000224237 NEUROD2Q15784 382 aa23.81■■□□□ 1.4
VIM-201ENST00000224237 RSPH6AQ9H0K4 717 aa23.81■■□□□ 1.4
VIM-201ENST00000224237 RCAN3Q9UKA8 241 aa23.81■■□□□ 1.4
VIM-201ENST00000224237 MAP3K19Q56UN5 1328 aa23.8■■□□□ 1.4
VIM-201ENST00000224237 FLT4P35916 1363 aa23.8■■□□□ 1.4
VIM-201ENST00000224237 KIF24Q5T7B8 1368 aa23.8■■□□□ 1.4
VIM-201ENST00000224237 TRMT2AQ8IZ69 625 aaKnown RBP23.79■■□□□ 1.4
VIM-201ENST00000224237 NEFMP07197 916 aa23.79■■□□□ 1.4
VIM-201ENST00000224237 KRT28Q7Z3Y7 464 aa23.79■■□□□ 1.4
VIM-201ENST00000224237 ERICH6BQ5W0A0 696 aa23.78■■□□□ 1.4
VIM-201ENST00000224237 WDR63Q8IWG1 891 aa23.77■■□□□ 1.4
Retrieved 100 of 20,778 RNA–protein pairs in 87.5 ms