RNA–Protein interactions for RNA: ENST00000223398.10

CLIP2-201, Transcript of CAP-Gly domain containing linker protein 2, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CLIP2, Length 5,563 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP2-201ENST00000223398 VPS37CA5D8V6 355 aaPredicted RBP22.43■■□□□ 1.18
CLIP2-201ENST00000223398 INTS3Q68E01 1043 aaKnown RBP22.43■■□□□ 1.18
CLIP2-201ENST00000223398 DAPK1P53355 1430 aa22.43■■□□□ 1.18
CLIP2-201ENST00000223398 IKQ13123 557 aaPredicted RBP22.42■■□□□ 1.18
CLIP2-201ENST00000223398 KIAA0586Q9BVV6 1533 aa22.42■■□□□ 1.18
CLIP2-201ENST00000223398 PRXQ9BXM0 1461 aa22.42■■□□□ 1.18
CLIP2-201ENST00000223398 CLASRPQ8N2M8 674 aaKnown RBP22.41■■□□□ 1.18
CLIP2-201ENST00000223398 GNAI3P08754 354 aa22.41■■□□□ 1.18
CLIP2-201ENST00000223398 TPM3P06753 285 aa22.41■■□□□ 1.18
CLIP2-201ENST00000223398 BECN2A8MW95 431 aa22.4■■□□□ 1.18
CLIP2-201ENST00000223398 NUDT16Q96DE0 195 aaKnown RBP22.4■■□□□ 1.18
CLIP2-201ENST00000223398 CCDC43Q96MW1 224 aaKnown RBP22.4■■□□□ 1.18
CLIP2-201ENST00000223398 BRD4O60885 1362 aaPredicted RBP22.4■■□□□ 1.18
CLIP2-201ENST00000223398 BICDL1Q6ZP65 573 aa22.39■■□□□ 1.18
CLIP2-201ENST00000223398 SIL1Q9H173 461 aa22.39■■□□□ 1.18
CLIP2-201ENST00000223398 TBC1D2BQ9UPU7 963 aa22.39■■□□□ 1.18
CLIP2-201ENST00000223398 FBXO31Q5XUX0 539 aaPredicted RBP22.39■■□□□ 1.17
CLIP2-201ENST00000223398 GOLGA6L19H0YKK7 550 aa22.39■■□□□ 1.17
CLIP2-201ENST00000223398 ADAMTS2O95450 1211 aa22.38■■□□□ 1.17
CLIP2-201ENST00000223398 DDX11L8A8MPP1 907 aa22.38■■□□□ 1.17
CLIP2-201ENST00000223398 RPGRIP1LQ68CZ1 1315 aa22.37■■□□□ 1.17
CLIP2-201ENST00000223398 BICD2Q8TD16 824 aa22.37■■□□□ 1.17
CLIP2-201ENST00000223398 NOB1Q9ULX3 412 aaKnown RBP22.36■■□□□ 1.17
CLIP2-201ENST00000223398 SMC3Q9UQE7 1217 aa22.36■■□□□ 1.17
CLIP2-201ENST00000223398 PLB1Q6P1J6 1458 aa22.36■■□□□ 1.17
CLIP2-201ENST00000223398 PCMTD1Q96MG8 357 aaPredicted RBP22.36■■□□□ 1.17
CLIP2-201ENST00000223398 TSR1Q2NL82 804 aaKnown RBP22.36■■□□□ 1.17
CLIP2-201ENST00000223398 EPRSP07814 1512 aaKnown RBP22.35■■□□□ 1.17
CLIP2-201ENST00000223398 STK11IPQ8N1F8 1099 aa22.35■■□□□ 1.17
CLIP2-201ENST00000223398 TPM2P07951 284 aa22.35■■□□□ 1.17
CLIP2-201ENST00000223398 A0A0U1RQG5 324 aaPredicted RBP22.34■■□□□ 1.17
CLIP2-201ENST00000223398 RRP12Q5JTH9 1297 aaKnown RBP22.34■■□□□ 1.17
CLIP2-201ENST00000223398 CNTROBQ8N137 903 aa22.34■■□□□ 1.17
CLIP2-201ENST00000223398 BTBD11A6QL63 1104 aa22.34■■□□□ 1.17
CLIP2-201ENST00000223398 TTC39AQ5SRH9 613 aa22.34■■□□□ 1.17
CLIP2-201ENST00000223398 SAFBQ15424 915 aaKnown RBP eCLIP22.33■■□□□ 1.17
CLIP2-201ENST00000223398 ANKRD30BQ9BXX2 1392 aa22.33■■□□□ 1.16
CLIP2-201ENST00000223398 CCDC61Q9Y6R9 512 aa22.32■■□□□ 1.16
CLIP2-201ENST00000223398 MAGI1Q96QZ7 1491 aaPredicted RBP22.32■■□□□ 1.16
CLIP2-201ENST00000223398 CCDC47Q96A33 483 aaKnown RBP22.32■■□□□ 1.16
CLIP2-201ENST00000223398 CCDC85AQ96PX6 553 aaPredicted RBP22.32■■□□□ 1.16
CLIP2-201ENST00000223398 GNAI2P04899 355 aa22.32■■□□□ 1.16
CLIP2-201ENST00000223398 NINLQ9Y2I6 1382 aa22.31■■□□□ 1.16
CLIP2-201ENST00000223398 IQGAP2Q13576 1575 aa22.31■■□□□ 1.16
CLIP2-201ENST00000223398 FOXO3O43524 673 aa22.31■■□□□ 1.16
CLIP2-201ENST00000223398 PNISRQ8TF01 805 aaKnown RBP22.31■■□□□ 1.16
CLIP2-201ENST00000223398 ADGRL1O94910 1474 aa22.31■■□□□ 1.16
CLIP2-201ENST00000223398 CDC45O75419 566 aa22.3■■□□□ 1.16
CLIP2-201ENST00000223398 BCAR3O75815 825 aa22.3■■□□□ 1.16
CLIP2-201ENST00000223398 ATP2B2Q01814 1243 aa22.3■■□□□ 1.16
CLIP2-201ENST00000223398 ATAD2Q6PL18 1390 aa22.3■■□□□ 1.16
CLIP2-201ENST00000223398 USHBP1Q8N6Y0 703 aa22.3■■□□□ 1.16
CLIP2-201ENST00000223398 CCDC158Q5M9N0 1113 aa22.29■■□□□ 1.16
CLIP2-201ENST00000223398 MIS18AQ9NYP9 233 aa22.29■■□□□ 1.16
CLIP2-201ENST00000223398 TIAM1Q13009 1591 aa22.29■■□□□ 1.16
CLIP2-201ENST00000223398 PTCD1O75127 700 aaKnown RBP22.29■■□□□ 1.16
CLIP2-201ENST00000223398 SUPT6HQ7KZ85 1726 aaKnown RBP22.29■■□□□ 1.16
CLIP2-201ENST00000223398 MPHOSPH8Q99549 860 aa22.29■■□□□ 1.16
CLIP2-201ENST00000223398 SRCIN1Q9C0H9 1055 aa22.29■■□□□ 1.16
CLIP2-201ENST00000223398 RBM5P52756 815 aaKnown RBP eCLIP22.28■■□□□ 1.16
CLIP2-201ENST00000223398 C22orf23Q9BZE7 217 aa22.28■■□□□ 1.16
CLIP2-201ENST00000223398 AMOTL2Q9Y2J4 779 aa22.28■■□□□ 1.16
CLIP2-201ENST00000223398 GNL3LQ9NVN8 582 aaKnown RBP22.28■■□□□ 1.16
CLIP2-201ENST00000223398 CNKSR2Q8WXI2 1034 aa22.28■■□□□ 1.16
CLIP2-201ENST00000223398 TPM1P09493 284 aa22.27■■□□□ 1.16
CLIP2-201ENST00000223398 ATP2B1P20020 1258 aa22.27■■□□□ 1.16
CLIP2-201ENST00000223398 CCDC141Q6ZP82 1450 aa22.27■■□□□ 1.15
CLIP2-201ENST00000223398 CCAR1Q8IX12 1150 aaKnown RBP22.26■■□□□ 1.15
CLIP2-201ENST00000223398 MAP4K4O95819 1239 aaPredicted RBP22.26■■□□□ 1.15
CLIP2-201ENST00000223398 ABCA10Q8WWZ4 1543 aa22.26■■□□□ 1.15
CLIP2-201ENST00000223398 CCDC57Q2TAC2 916 aa22.26■■□□□ 1.15
CLIP2-201ENST00000223398 LAMC3Q9Y6N6 1575 aa22.25■■□□□ 1.15
CLIP2-201ENST00000223398 CCAR2Q8N163 923 aaKnown RBP22.25■■□□□ 1.15
CLIP2-201ENST00000223398 SPINK5Q9NQ38 1064 aaPredicted RBP22.25■■□□□ 1.15
CLIP2-201ENST00000223398 SART3Q15020 963 aaKnown RBP22.25■■□□□ 1.15
CLIP2-201ENST00000223398 NSD3Q9BZ95 1437 aa22.24■■□□□ 1.15
CLIP2-201ENST00000223398 KCNH5Q8NCM2 988 aa22.24■■□□□ 1.15
CLIP2-201ENST00000223398 ERC1Q8IUD2 1116 aa22.23■■□□□ 1.15
CLIP2-201ENST00000223398 GRIN2AQ12879 1464 aa22.23■■□□□ 1.15
CLIP2-201ENST00000223398 NME9Q86XW9 330 aa22.23■■□□□ 1.15
CLIP2-201ENST00000223398 THUMPD2Q9BTF0 503 aaKnown RBP22.23■■□□□ 1.15
CLIP2-201ENST00000223398 BRMS1Q9HCU9 246 aa22.23■■□□□ 1.15
CLIP2-201ENST00000223398 NGLY1Q96IV0 654 aa22.22■■□□□ 1.15
CLIP2-201ENST00000223398 IDI1Q13907 227 aa22.22■■□□□ 1.15
CLIP2-201ENST00000223398 MCM10Q7L590 875 aa22.22■■□□□ 1.15
CLIP2-201ENST00000223398 PSMA5P28066 241 aa22.22■■□□□ 1.15
CLIP2-201ENST00000223398 CCT4P50991 539 aaKnown RBP22.22■■□□□ 1.15
CLIP2-201ENST00000223398 PHF8Q9UPP1 1060 aa22.22■■□□□ 1.15
CLIP2-201ENST00000223398 HOOK1Q9UJC3 728 aaKnown RBP22.21■■□□□ 1.15
CLIP2-201ENST00000223398 SLC3A2P08195 630 aaKnown RBP22.21■■□□□ 1.15
CLIP2-201ENST00000223398 FKBP4Q02790 459 aaKnown RBP eCLIP22.21■■□□□ 1.15
CLIP2-201ENST00000223398 GNAT3A8MTJ3 354 aa22.21■■□□□ 1.15
CLIP2-201ENST00000223398 ANKRD20A12PQ8NF67 263 aa22.21■■□□□ 1.15
CLIP2-201ENST00000223398 PDZRN3Q9UPQ7 1066 aa22.21■■□□□ 1.15
CLIP2-201ENST00000223398 CAMSAP2Q08AD1 1489 aa22.2■■□□□ 1.14
CLIP2-201ENST00000223398 SKOR2Q2VWA4 1001 aaPredicted RBP22.2■■□□□ 1.14
CLIP2-201ENST00000223398 XBP1P17861 261 aa22.2■■□□□ 1.14
CLIP2-201ENST00000223398 DCTN1Q14203 1278 aa22.2■■□□□ 1.14
CLIP2-201ENST00000223398 TMOD3Q9NYL9 352 aa22.2■■□□□ 1.14
CLIP2-201ENST00000223398 MPRIPQ6WCQ1 1025 aa22.19■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 78.2 ms