RNA–Protein interactions for RNA: ENST00000217402.2

CHMP4B-201, Transcript of charged multivesicular body protein 4B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CHMP4B, Length 1,646 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4B-201ENST00000217402 SOS2Q07890 1332 aaPredicted RBP37.41■■■■□ 3.58
CHMP4B-201ENST00000217402 TTC21BQ7Z4L5 1316 aa37.41■■■■□ 3.58
CHMP4B-201ENST00000217402 TRPM3Q9HCF6 1732 aaPredicted RBP37.41■■■■□ 3.58
CHMP4B-201ENST00000217402 KNSTRNQ9Y448 316 aa37.4■■■■□ 3.58
CHMP4B-201ENST00000217402 PHLPP1O60346 1717 aa37.39■■■■□ 3.58
CHMP4B-201ENST00000217402 PER1O15534 1290 aaPredicted RBP37.38■■■■□ 3.57
CHMP4B-201ENST00000217402 BRD4O60885 1362 aaPredicted RBP37.37■■■■□ 3.57
CHMP4B-201ENST00000217402 SBNO1A3KN83 1393 aa37.35■■■■□ 3.57
CHMP4B-201ENST00000217402 TTC21AQ8NDW8 1320 aa37.34■■■■□ 3.57
CHMP4B-201ENST00000217402 LMOD2Q6P5Q4 547 aa37.34■■■■□ 3.57
CHMP4B-201ENST00000217402 CGNL1Q0VF96 1302 aa37.34■■■■□ 3.57
CHMP4B-201ENST00000217402 TNS3Q68CZ2 1445 aa37.33■■■■□ 3.57
CHMP4B-201ENST00000217402 NME9Q86XW9 330 aa37.33■■■■□ 3.57
CHMP4B-201ENST00000217402 COL16A1Q07092 1604 aaPredicted RBP37.33■■■■□ 3.57
CHMP4B-201ENST00000217402 CNGB1Q14028 1251 aaPredicted RBP37.32■■■■□ 3.56
CHMP4B-201ENST00000217402 ABTB2Q8N961 1025 aa37.31■■■■□ 3.56
CHMP4B-201ENST00000217402 SPATA31A3Q5VYP0 1347 aa37.3■■■■□ 3.56
CHMP4B-201ENST00000217402 PIK3C2AO00443 1686 aa37.3■■■■□ 3.56
CHMP4B-201ENST00000217402 NUTM2GQ5VZR2 741 aa37.3■■■■□ 3.56
CHMP4B-201ENST00000217402 ALS2Q96Q42 1657 aa37.29■■■■□ 3.56
CHMP4B-201ENST00000217402 KIF20BQ96Q89 1820 aa37.28■■■■□ 3.56
CHMP4B-201ENST00000217402 FYB1O15117 783 aa37.28■■■■□ 3.56
CHMP4B-201ENST00000217402 AMER1Q5JTC6 1135 aaPredicted RBP37.28■■■■□ 3.56
CHMP4B-201ENST00000217402 GGNBP2Q9H3C7 697 aa37.28■■■■□ 3.56
CHMP4B-201ENST00000217402 ZRANB1Q9UGI0 708 aa37.28■■■■□ 3.56
CHMP4B-201ENST00000217402 HSPA1LP34931 641 aa37.26■■■■□ 3.56
CHMP4B-201ENST00000217402 LRRC59Q96AG4 307 aaKnown RBP37.26■■■■□ 3.56
CHMP4B-201ENST00000217402 FBXO41Q8TF61 875 aa37.25■■■■□ 3.55
CHMP4B-201ENST00000217402 CC2D1BQ5T0F9 858 aaKnown RBP37.25■■■■□ 3.55
CHMP4B-201ENST00000217402 PLEKHG5O94827 1062 aa37.24■■■■□ 3.55
CHMP4B-201ENST00000217402 NLRP6P59044 892 aa37.23■■■■□ 3.55
CHMP4B-201ENST00000217402 ARHGEF10O15013 1369 aa37.23■■■■□ 3.55
CHMP4B-201ENST00000217402 NSD2O96028 1365 aa37.2■■■■□ 3.55
CHMP4B-201ENST00000217402 COG3Q96JB2 828 aa37.18■■■■□ 3.54
CHMP4B-201ENST00000217402 OVOS2A0A0J9YW53 1432 aa37.18■■■■□ 3.54
CHMP4B-201ENST00000217402 OVOS2Q6IE36 1432 aa37.18■■■■□ 3.54
CHMP4B-201ENST00000217402 USP31Q70CQ4 1352 aa37.17■■■■□ 3.54
CHMP4B-201ENST00000217402 NPC1L1Q9UHC9 1359 aa37.17■■■■□ 3.54
CHMP4B-201ENST00000217402 NLRP13Q86W25 1043 aa37.17■■■■□ 3.54
CHMP4B-201ENST00000217402 PNPLA6Q8IY17 1366 aa37.16■■■■□ 3.54
CHMP4B-201ENST00000217402 ANKRD26Q9UPS8 1709 aa37.14■■■■□ 3.54
CHMP4B-201ENST00000217402 MARF1Q9Y4F3 1742 aaKnown RBP37.14■■■■□ 3.54
CHMP4B-201ENST00000217402 DIEXFQ68CQ4 756 aaKnown RBP37.13■■■■□ 3.53
CHMP4B-201ENST00000217402 USP54Q70EL1 1684 aa37.12■■■■□ 3.53
CHMP4B-201ENST00000217402 MORC1Q86VD1 984 aa37.12■■■■□ 3.53
CHMP4B-201ENST00000217402 CABLES1Q8TDN4 633 aa37.12■■■■□ 3.53
CHMP4B-201ENST00000217402 MED1Q15648 1581 aaPredicted RBP37.11■■■■□ 3.53
CHMP4B-201ENST00000217402 SOX12O15370 315 aa37.11■■■■□ 3.53
CHMP4B-201ENST00000217402 USP19O94966 1318 aa37.09■■■■□ 3.53
CHMP4B-201ENST00000217402 JCADQ9P266 1359 aa37.09■■■■□ 3.53
CHMP4B-201ENST00000217402 TNNT2P45379 298 aaPredicted RBP37.09■■■■□ 3.53
CHMP4B-201ENST00000217402 COL22A1Q8NFW1 1626 aaPredicted RBP37.07■■■■□ 3.53
CHMP4B-201ENST00000217402 SHPRHQ149N8 1683 aa37.07■■■■□ 3.52
CHMP4B-201ENST00000217402 CRYBG1Q9Y4K1 1723 aa37.06■■■■□ 3.52
CHMP4B-201ENST00000217402 SLIT3O75094 1523 aa37.06■■■■□ 3.52
CHMP4B-201ENST00000217402 PHRF1Q9P1Y6 1649 aaKnown RBP37.05■■■■□ 3.52
CHMP4B-201ENST00000217402 HAP1P54257 671 aaPredicted RBP37.03■■■■□ 3.52
CHMP4B-201ENST00000217402 ABCA3Q99758 1704 aa37.03■■■■□ 3.52
CHMP4B-201ENST00000217402 PARD3Q8TEW0 1356 aa37.03■■■■□ 3.52
CHMP4B-201ENST00000217402 GCP02774 474 aa37.02■■■■□ 3.52
CHMP4B-201ENST00000217402 FBLN1P23142 703 aa37.02■■■■□ 3.52
CHMP4B-201ENST00000217402 ANP32CO43423 234 aa37■■■■□ 3.51
CHMP4B-201ENST00000217402 KCNH5Q8NCM2 988 aa36.99■■■■□ 3.51
CHMP4B-201ENST00000217402 PRKRIP1Q9H875 184 aaPredicted RBP36.99■■■■□ 3.51
CHMP4B-201ENST00000217402 NFAT5O94916 1531 aa36.98■■■■□ 3.51
CHMP4B-201ENST00000217402 NUTM2BA6NNL0 878 aaPredicted RBP36.96■■■■□ 3.51
CHMP4B-201ENST00000217402 NUTM2EB1AL46 878 aaPredicted RBP36.96■■■■□ 3.51
CHMP4B-201ENST00000217402 RALBP1Q15311 655 aa36.96■■■■□ 3.51
CHMP4B-201ENST00000217402 NUTM2AQ8IVF1 878 aaPredicted RBP36.96■■■■□ 3.51
CHMP4B-201ENST00000217402 ZC3H6P61129 1189 aaKnown RBP36.94■■■■□ 3.5
CHMP4B-201ENST00000217402 RRS1Q15050 365 aaKnown RBP36.94■■■■□ 3.5
CHMP4B-201ENST00000217402 ZBTB7CA1YPR0 619 aa36.93■■■■□ 3.5
CHMP4B-201ENST00000217402 AATKQ6ZMQ8 1374 aa36.92■■■■□ 3.5
CHMP4B-201ENST00000217402 SPATA31A6Q5VVP1 1343 aa36.9■■■■□ 3.5
CHMP4B-201ENST00000217402 PPP2R1AP30153 589 aa36.88■■■■□ 3.5
CHMP4B-201ENST00000217402 EMILIN1Q9Y6C2 1016 aa36.88■■■■□ 3.5
CHMP4B-201ENST00000217402 MAP3K19Q56UN5 1328 aa36.88■■■■□ 3.49
CHMP4B-201ENST00000217402 KIAA0232Q92628 1395 aa36.88■■■■□ 3.49
CHMP4B-201ENST00000217402 ADAMTS2O95450 1211 aa36.87■■■■□ 3.49
CHMP4B-201ENST00000217402 PPM1GO15355 546 aaPredicted RBP36.86■■■■□ 3.49
CHMP4B-201ENST00000217402 POLKQ9UBT6 870 aa36.86■■■■□ 3.49
CHMP4B-201ENST00000217402 MYBBP1AQ9BQG0 1328 aaKnown RBP36.86■■■■□ 3.49
CHMP4B-201ENST00000217402 LTN1O94822 1766 aa36.85■■■■□ 3.49
CHMP4B-201ENST00000217402 ARHGEF25Q86VW2 580 aa36.85■■■■□ 3.49
CHMP4B-201ENST00000217402 LRP6O75581 1613 aa36.84■■■■□ 3.49
CHMP4B-201ENST00000217402 MAP2P11137 1827 aaKnown RBP36.84■■■■□ 3.49
CHMP4B-201ENST00000217402 PRDM11Q9NQV5 511 aa36.84■■■■□ 3.49
CHMP4B-201ENST00000217402 CPDO75976 1380 aa36.84■■■■□ 3.49
CHMP4B-201ENST00000217402 CHRNA2Q15822 529 aa36.82■■■■□ 3.49
CHMP4B-201ENST00000217402 MTHFSP49914 203 aa36.81■■■■□ 3.48
CHMP4B-201ENST00000217402 AMPHP49418 695 aa36.81■■■■□ 3.48
CHMP4B-201ENST00000217402 PEAK1Q9H792 1746 aa36.8■■■■□ 3.48
CHMP4B-201ENST00000217402 SMG6Q86US8 1419 aaKnown RBP36.8■■■■□ 3.48
CHMP4B-201ENST00000217402 ILDR1Q86SU0 546 aaPredicted RBP36.79■■■■□ 3.48
CHMP4B-201ENST00000217402 FAM83GA6ND36 823 aa36.75■■■■□ 3.47
CHMP4B-201ENST00000217402 MIER1Q8N108 512 aa36.75■■■■□ 3.47
CHMP4B-201ENST00000217402 RTL1A6NKG5 1358 aa36.75■■■■□ 3.47
CHMP4B-201ENST00000217402 FLT4P35916 1363 aa36.75■■■■□ 3.47
CHMP4B-201ENST00000217402 HOXC9P31274 260 aa36.74■■■■□ 3.47
CHMP4B-201ENST00000217402 CDK12Q9NYV4 1490 aaPredicted RBP36.74■■■■□ 3.47
Retrieved 100 of 20,778 RNA–protein pairs in 90 ms