RNA–Protein interactions for RNA: ENST00000638142.2

SYNGAP1-227, Transcript of synaptic Ras GTPase activating protein 1, humanhuman

TSL 5

Gene SYNGAP1, Length 2,499 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNGAP1-227ENST00000638142 SNX27Q96L92 541 aa20.6■□□□□ 0.89
SYNGAP1-227ENST00000638142 KCNK16Q96T55 309 aa20.6■□□□□ 0.89
SYNGAP1-227ENST00000638142 TMEM114B3SHH9 223 aa20.6■□□□□ 0.89
SYNGAP1-227ENST00000638142 ZNF189O75820 626 aaPredicted RBP20.6■□□□□ 0.89
SYNGAP1-227ENST00000638142 COX4I1P13073 169 aa20.6■□□□□ 0.89
SYNGAP1-227ENST00000638142 LIMK2P53671 638 aa20.6■□□□□ 0.89
SYNGAP1-227ENST00000638142 IFRD2Q12894 506 aaPredicted RBP20.6■□□□□ 0.89
SYNGAP1-227ENST00000638142 ZBTB6Q15916 424 aa20.6■□□□□ 0.89
SYNGAP1-227ENST00000638142 SFT2D3Q587I9 215 aa20.6■□□□□ 0.89
SYNGAP1-227ENST00000638142 MAP3K21Q5TCX8 1036 aa20.6■□□□□ 0.89
SYNGAP1-227ENST00000638142 ZNF567Q8N184 647 aa20.6■□□□□ 0.89
SYNGAP1-227ENST00000638142 PHTF2Q8N3S3 785 aa20.6■□□□□ 0.89
SYNGAP1-227ENST00000638142 GDPD5Q8WTR4 605 aa20.6■□□□□ 0.89
SYNGAP1-227ENST00000638142 SREK1Q8WXA9 508 aaKnown RBP20.6■□□□□ 0.89
SYNGAP1-227ENST00000638142 RTKNQ9BST9 563 aa20.6■□□□□ 0.89
SYNGAP1-227ENST00000638142 SHCBP1LQ9BZQ2 653 aa20.6■□□□□ 0.89
SYNGAP1-227ENST00000638142 LRRC40Q9H9A6 602 aa20.6■□□□□ 0.89
SYNGAP1-227ENST00000638142 COG4Q9H9E3 785 aa20.6■□□□□ 0.89
SYNGAP1-227ENST00000638142 SEPT10Q9P0V9 454 aa20.6■□□□□ 0.89
SYNGAP1-227ENST00000638142 TUBGCP4Q9UGJ1 667 aa20.6■□□□□ 0.89
SYNGAP1-227ENST00000638142 RALGAPA2Q2PPJ7 1873 aa20.59■□□□□ 0.89
SYNGAP1-227ENST00000638142 CASQ2O14958 399 aaPredicted RBP20.59■□□□□ 0.89
SYNGAP1-227ENST00000638142 ADCY6O43306 1168 aa20.59■□□□□ 0.89
SYNGAP1-227ENST00000638142 DCXO43602 365 aa20.59■□□□□ 0.89
SYNGAP1-227ENST00000638142 SULT1E1P49888 294 aa20.59■□□□□ 0.89
SYNGAP1-227ENST00000638142 MTTPP55157 894 aa20.59■□□□□ 0.89
SYNGAP1-227ENST00000638142 FRG1Q14331 258 aaKnown RBP20.59■□□□□ 0.89
SYNGAP1-227ENST00000638142 CMC1Q7Z7K0 106 aa20.59■□□□□ 0.89
SYNGAP1-227ENST00000638142 CCNYQ8ND76 341 aa20.59■□□□□ 0.89
SYNGAP1-227ENST00000638142 CEP41Q9BYV8 373 aa20.59■□□□□ 0.89
SYNGAP1-227ENST00000638142 CXCL16Q9H2A7 254 aa20.59■□□□□ 0.89
SYNGAP1-227ENST00000638142 ZNF358Q9NW07 568 aa20.59■□□□□ 0.89
SYNGAP1-227ENST00000638142 RBPJLQ9UBG7 517 aa20.59■□□□□ 0.89
SYNGAP1-227ENST00000638142 LOC100653049A0A140TA62 436 aa20.59■□□□□ 0.89
SYNGAP1-227ENST00000638142 ASB14A6NK59 587 aa20.59■□□□□ 0.89
SYNGAP1-227ENST00000638142 H2AFYO75367 372 aaKnown RBP20.59■□□□□ 0.89
SYNGAP1-227ENST00000638142 KRT34O76011 436 aa20.59■□□□□ 0.89
SYNGAP1-227ENST00000638142 HSPA4LO95757 839 aa20.59■□□□□ 0.89
SYNGAP1-227ENST00000638142 MSLNQ13421 630 aaPredicted RBP20.59■□□□□ 0.89
SYNGAP1-227ENST00000638142 LPCAT4Q643R3 524 aa20.59■□□□□ 0.89
SYNGAP1-227ENST00000638142 HPS6Q86YV9 775 aa20.59■□□□□ 0.89
SYNGAP1-227ENST00000638142 RNF217Q8TC41 542 aa20.59■□□□□ 0.89
SYNGAP1-227ENST00000638142 PRDM12Q9H4Q4 367 aa20.59■□□□□ 0.89
SYNGAP1-227ENST00000638142 VCX3AQ9NNX9 186 aa20.59■□□□□ 0.89
SYNGAP1-227ENST00000638142 KPNA7A9QM74 516 aa20.58■□□□□ 0.89
SYNGAP1-227ENST00000638142 PEX1O43933 1283 aa20.58■□□□□ 0.89
SYNGAP1-227ENST00000638142 CAPN15O75808 1086 aa20.58■□□□□ 0.89
SYNGAP1-227ENST00000638142 SORBS2O94875 1100 aaKnown RBP20.58■□□□□ 0.89
SYNGAP1-227ENST00000638142 MPOP05164 745 aa20.58■□□□□ 0.89
SYNGAP1-227ENST00000638142 PEX2P28328 305 aa20.58■□□□□ 0.89
SYNGAP1-227ENST00000638142 SERPINB6P35237 376 aa20.58■□□□□ 0.89
SYNGAP1-227ENST00000638142 KLF10Q13118 480 aa20.58■□□□□ 0.89
SYNGAP1-227ENST00000638142 PAFAH1B3Q15102 231 aaKnown RBP20.58■□□□□ 0.89
SYNGAP1-227ENST00000638142 LRRC36Q1X8D7 754 aa20.58■□□□□ 0.89
SYNGAP1-227ENST00000638142 Q3C1V9 767 aa20.58■□□□□ 0.89
SYNGAP1-227ENST00000638142 CES3Q6UWW8 571 aa20.58■□□□□ 0.89
SYNGAP1-227ENST00000638142 DEFB132Q7Z7B7 95 aa20.58■□□□□ 0.89
SYNGAP1-227ENST00000638142 SDCCAG8Q86SQ7 713 aaPredicted RBP20.58■□□□□ 0.89
SYNGAP1-227ENST00000638142 ZNF410Q86VK4 478 aa20.58■□□□□ 0.89
SYNGAP1-227ENST00000638142 DEFB106AQ8N104 65 aa20.58■□□□□ 0.89
SYNGAP1-227ENST00000638142 FCRL3Q96P31 734 aaPredicted RBP20.58■□□□□ 0.89
SYNGAP1-227ENST00000638142 SNTG2Q9NY99 539 aa20.58■□□□□ 0.89
SYNGAP1-227ENST00000638142 SSX2IPQ9Y2D8 614 aa20.58■□□□□ 0.89
SYNGAP1-227ENST00000638142 NUMBP49757 651 aa20.58■□□□□ 0.88
SYNGAP1-227ENST00000638142 KBTBD6Q86V97 674 aa20.58■□□□□ 0.88
SYNGAP1-227ENST00000638142 ZNF781Q8N8C0 355 aa20.58■□□□□ 0.88
SYNGAP1-227ENST00000638142 SERBP1Q8NC51 408 aaKnown RBP eCLIP20.58■□□□□ 0.88
SYNGAP1-227ENST00000638142 DTNBP1Q96EV8 351 aa20.58■□□□□ 0.88
SYNGAP1-227ENST00000638142 DNAI2Q9GZS0 605 aa20.58■□□□□ 0.88
SYNGAP1-227ENST00000638142 HCRTO43612 131 aa20.57■□□□□ 0.88
SYNGAP1-227ENST00000638142 ZBTB14O43829 449 aa20.57■□□□□ 0.88
SYNGAP1-227ENST00000638142 DAB1O75553 588 aa20.57■□□□□ 0.88
SYNGAP1-227ENST00000638142 PDGFRBP09619 1106 aa20.57■□□□□ 0.88
SYNGAP1-227ENST00000638142 RAG1P15918 1043 aa20.57■□□□□ 0.88
SYNGAP1-227ENST00000638142 VCLP18206 1134 aa20.57■□□□□ 0.88
SYNGAP1-227ENST00000638142 AQP4P55087 323 aa20.57■□□□□ 0.88
SYNGAP1-227ENST00000638142 USP4Q13107 963 aa20.57■□□□□ 0.88
SYNGAP1-227ENST00000638142 GRM2Q14416 872 aa20.57■□□□□ 0.88
SYNGAP1-227ENST00000638142 SMAD1Q15797 465 aaKnown RBP20.57■□□□□ 0.88
SYNGAP1-227ENST00000638142 TCHHL1Q5QJ38 904 aaPredicted RBP20.57■□□□□ 0.88
SYNGAP1-227ENST00000638142 C9orf57Q5W0N0 161 aa20.57■□□□□ 0.88
SYNGAP1-227ENST00000638142 STRA8Q7Z7C7 330 aa20.57■□□□□ 0.88
SYNGAP1-227ENST00000638142 CLEC14AQ86T13 490 aa20.57■□□□□ 0.88
SYNGAP1-227ENST00000638142 TNS4Q8IZW8 715 aa20.57■□□□□ 0.88
SYNGAP1-227ENST00000638142 PLD6Q8N2A8 252 aaKnown RBP20.57■□□□□ 0.88
SYNGAP1-227ENST00000638142 NME8Q8N427 588 aa20.57■□□□□ 0.88
SYNGAP1-227ENST00000638142 PIP4K2CQ8TBX8 421 aa20.57■□□□□ 0.88
SYNGAP1-227ENST00000638142 KBTBD7Q8WVZ9 684 aa20.57■□□□□ 0.88
SYNGAP1-227ENST00000638142 C18orf25Q96B23 403 aaPredicted RBP20.57■□□□□ 0.88
SYNGAP1-227ENST00000638142 BTBD9Q96Q07 612 aa20.57■□□□□ 0.88
SYNGAP1-227ENST00000638142 HAPLN3Q96S86 360 aa20.57■□□□□ 0.88
SYNGAP1-227ENST00000638142 G3V2L1 256 aa20.56■□□□□ 0.88
SYNGAP1-227ENST00000638142 GNL1P36915 607 aaPredicted RBP20.56■□□□□ 0.88
SYNGAP1-227ENST00000638142 TRIP10Q15642 601 aa20.56■□□□□ 0.88
SYNGAP1-227ENST00000638142 FSTL4Q6MZW2 842 aa20.56■□□□□ 0.88
SYNGAP1-227ENST00000638142 PID1Q7Z2X4 250 aa20.56■□□□□ 0.88
SYNGAP1-227ENST00000638142 TMEM135Q86UB9 458 aa20.56■□□□□ 0.88
SYNGAP1-227ENST00000638142 PPTC7Q8NI37 304 aa20.56■□□□□ 0.88
SYNGAP1-227ENST00000638142 FAM149B1Q96BN6 582 aa20.56■□□□□ 0.88
SYNGAP1-227ENST00000638142 ZNF669Q96BR6 464 aaPredicted RBP20.56■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms