RNA–Protein interactions for RNA: ENST00000636876.1

CLN6-216, Transcript of CLN6, transmembrane ER protein, humanhuman

TSL 5

Gene CLN6, Length 655 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6-216ENST00000636876 MFN1Q8IWA4 741 aa16.47■□□□□ 0.23
CLN6-216ENST00000636876 CCDC117Q8IWD4 279 aaPredicted RBP16.47■□□□□ 0.23
CLN6-216ENST00000636876 PHTF2Q8N3S3 785 aa16.47■□□□□ 0.23
CLN6-216ENST00000636876 KCTD6Q8NC69 237 aa16.47■□□□□ 0.23
CLN6-216ENST00000636876 FIBINQ8TAL6 211 aa16.47■□□□□ 0.23
CLN6-216ENST00000636876 FAM3CQ92520 227 aa16.47■□□□□ 0.23
CLN6-216ENST00000636876 TSC1Q92574 1164 aa16.47■□□□□ 0.23
CLN6-216ENST00000636876 PNKPQ96T60 521 aa16.47■□□□□ 0.23
CLN6-216ENST00000636876 RETREG1Q9H6L5 497 aa16.47■□□□□ 0.23
CLN6-216ENST00000636876 ARHGEF4Q9NR80 690 aa16.47■□□□□ 0.23
CLN6-216ENST00000636876 KLHL11Q9NVR0 708 aa16.47■□□□□ 0.23
CLN6-216ENST00000636876 DDX56Q9NY93 547 aaKnown RBP16.47■□□□□ 0.23
CLN6-216ENST00000636876 CWC15Q9P013 229 aaKnown RBP16.47■□□□□ 0.23
CLN6-216ENST00000636876 RCOR3Q9P2K3 495 aaPredicted RBP16.47■□□□□ 0.23
CLN6-216ENST00000636876 ZNF212Q9UDV6 495 aa16.47■□□□□ 0.23
CLN6-216ENST00000636876 AMFRQ9UKV5 643 aa16.47■□□□□ 0.23
CLN6-216ENST00000636876 SLC27A6Q9Y2P4 619 aa16.47■□□□□ 0.23
CLN6-216ENST00000636876 HCN4Q9Y3Q4 1203 aa16.47■□□□□ 0.23
CLN6-216ENST00000636876 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP16.46■□□□□ 0.23
CLN6-216ENST00000636876 PI4K2BG5E9Z4 385 aa16.46■□□□□ 0.23
CLN6-216ENST00000636876 H0Y626 953 aa16.46■□□□□ 0.23
CLN6-216ENST00000636876 FGF10O15520 208 aaPredicted RBP16.46■□□□□ 0.23
CLN6-216ENST00000636876 GPR37L1O60883 481 aa16.46■□□□□ 0.23
CLN6-216ENST00000636876 KRT1P04264 644 aa16.46■□□□□ 0.23
CLN6-216ENST00000636876 CD72P21854 359 aa16.46■□□□□ 0.23
CLN6-216ENST00000636876 CTNNA2P26232 953 aa16.46■□□□□ 0.23
CLN6-216ENST00000636876 CTNNA1P35221 906 aaKnown RBP16.46■□□□□ 0.23
CLN6-216ENST00000636876 MARCKSL1P49006 195 aa16.46■□□□□ 0.23
CLN6-216ENST00000636876 KDSRQ06136 332 aa16.46■□□□□ 0.23
CLN6-216ENST00000636876 ZNF177Q13360 481 aaPredicted RBP16.46■□□□□ 0.23
CLN6-216ENST00000636876 DPYSL3Q14195 570 aa16.46■□□□□ 0.23
CLN6-216ENST00000636876 PREPLQ4J6C6 727 aaPredicted RBP16.46■□□□□ 0.23
CLN6-216ENST00000636876 TMEM196Q5HYL7 178 aa16.46■□□□□ 0.23
CLN6-216ENST00000636876 ZFYVE27Q5T4F4 411 aa16.46■□□□□ 0.23
CLN6-216ENST00000636876 CXorf57Q6NSI4 855 aaKnown RBP16.46■□□□□ 0.23
CLN6-216ENST00000636876 TRIM67Q6ZTA4 783 aa16.46■□□□□ 0.23
CLN6-216ENST00000636876 RFX8Q6ZV50 586 aa16.46■□□□□ 0.23
CLN6-216ENST00000636876 NLRP14Q86W24 1093 aa16.46■□□□□ 0.23
CLN6-216ENST00000636876 MAP7D3Q8IWC1 876 aa16.46■□□□□ 0.23
CLN6-216ENST00000636876 SUGP1Q8IWZ8 645 aaKnown RBP16.46■□□□□ 0.23
CLN6-216ENST00000636876 DDX51Q8N8A6 666 aaKnown RBP eCLIP16.46■□□□□ 0.23
CLN6-216ENST00000636876 RTL3Q8N8U3 475 aaKnown RBP16.46■□□□□ 0.23
CLN6-216ENST00000636876 RAPGEF5Q92565 580 aa16.46■□□□□ 0.23
CLN6-216ENST00000636876 KRT35Q92764 455 aa16.46■□□□□ 0.23
CLN6-216ENST00000636876 LMLNQ96KR4 655 aa16.46■□□□□ 0.23
CLN6-216ENST00000636876 CSPG4P5Q96PW8 444 aa16.46■□□□□ 0.23
CLN6-216ENST00000636876 ALS2CR12Q96Q35 445 aa16.46■□□□□ 0.23
CLN6-216ENST00000636876 CATSPERBQ9H7T0 1116 aa16.46■□□□□ 0.23
CLN6-216ENST00000636876 FBRSL1Q9HCM7 1045 aaKnown RBP16.46■□□□□ 0.23
CLN6-216ENST00000636876 TMEM248Q9NWD8 314 aa16.46■□□□□ 0.23
CLN6-216ENST00000636876 MRPS17Q9Y2R5 130 aaKnown RBP16.46■□□□□ 0.23
CLN6-216ENST00000636876 PCDHA3Q9Y5H8 950 aa16.46■□□□□ 0.23
CLN6-216ENST00000636876 KANSL1LA0AUZ9 987 aa16.45■□□□□ 0.22
CLN6-216ENST00000636876 CCDC66A2RUB6 948 aa16.45■□□□□ 0.22
CLN6-216ENST00000636876 LRRD1A4D1F6 860 aa16.45■□□□□ 0.22
CLN6-216ENST00000636876 GOLGA6L9A6NEM1 432 aa16.45■□□□□ 0.22
CLN6-216ENST00000636876 USP27XA6NNY8 438 aa16.45■□□□□ 0.22
CLN6-216ENST00000636876 WASH4PA8MWX3 477 aa16.45■□□□□ 0.22
CLN6-216ENST00000636876 MIF4GDA9UHW6 222 aaKnown RBP16.45■□□□□ 0.22
CLN6-216ENST00000636876 DAPK3O43293 454 aa16.45■□□□□ 0.22
CLN6-216ENST00000636876 KAT7O95251 611 aa16.45■□□□□ 0.22
CLN6-216ENST00000636876 APODP05090 189 aa16.45■□□□□ 0.22
CLN6-216ENST00000636876 CD48P09326 243 aa16.45■□□□□ 0.22
CLN6-216ENST00000636876 KDELR1P24390 212 aa16.45■□□□□ 0.22
CLN6-216ENST00000636876 HLA-FP30511 346 aa16.45■□□□□ 0.22
CLN6-216ENST00000636876 GRIA2P42262 883 aa16.45■□□□□ 0.22
CLN6-216ENST00000636876 MAPKAPK2P49137 400 aa16.45■□□□□ 0.22
CLN6-216ENST00000636876 OXCT1P55809 520 aa16.45■□□□□ 0.22
CLN6-216ENST00000636876 GRSF1Q12849 480 aaKnown RBP eCLIP16.45■□□□□ 0.22
CLN6-216ENST00000636876 LMAN2Q12907 356 aa16.45■□□□□ 0.22
CLN6-216ENST00000636876 DPYSQ14117 519 aa16.45■□□□□ 0.22
CLN6-216ENST00000636876 HS1BP3Q53T59 392 aa16.45■□□□□ 0.22
CLN6-216ENST00000636876 FSCBQ5H9T9 825 aa16.45■□□□□ 0.22
CLN6-216ENST00000636876 FSTL4Q6MZW2 842 aa16.45■□□□□ 0.22
CLN6-216ENST00000636876 KIAA0907Q7Z7F0 614 aaPredicted RBP16.45■□□□□ 0.22
CLN6-216ENST00000636876 KATNAL2Q8IYT4 538 aa16.45■□□□□ 0.22
CLN6-216ENST00000636876 TERB1Q8NA31 727 aa16.45■□□□□ 0.22
CLN6-216ENST00000636876 TRIM58Q8NG06 486 aa16.45■□□□□ 0.22
CLN6-216ENST00000636876 UBE2Q2Q8WVN8 375 aa16.45■□□□□ 0.22
CLN6-216ENST00000636876 ZNF670Q9BS34 389 aa16.45■□□□□ 0.22
CLN6-216ENST00000636876 CALN1Q9BXU9 219 aa16.45■□□□□ 0.22
CLN6-216ENST00000636876 TBC1D17Q9HA65 648 aa16.45■□□□□ 0.22
CLN6-216ENST00000636876 ABCB8Q9NUT2 735 aa16.45■□□□□ 0.22
CLN6-216ENST00000636876 KIAA1522Q9P206 1035 aaPredicted RBP16.45■□□□□ 0.22
CLN6-216ENST00000636876 GGA2Q9UJY4 613 aa16.45■□□□□ 0.22
CLN6-216ENST00000636876 TBC1D30Q9Y2I9 924 aa16.45■□□□□ 0.22
CLN6-216ENST00000636876 SBDSQ9Y3A5 250 aaKnown RBP eCLIP16.45■□□□□ 0.22
CLN6-216ENST00000636876 TMEM221A6NGB7 291 aa16.44■□□□□ 0.22
CLN6-216ENST00000636876 C3orf70A6NLC5 250 aaPredicted RBP16.44■□□□□ 0.22
CLN6-216ENST00000636876 ZNF487B1APH4 448 aa16.44■□□□□ 0.22
CLN6-216ENST00000636876 M0R296 226 aa16.44■□□□□ 0.22
CLN6-216ENST00000636876 RHOCP08134 193 aa16.44■□□□□ 0.22
CLN6-216ENST00000636876 PABPC1P11940 636 aaKnown RBP16.44■□□□□ 0.22
CLN6-216ENST00000636876 ERCC2P18074 760 aa16.44■□□□□ 0.22
CLN6-216ENST00000636876 DRD1P21728 446 aa16.44■□□□□ 0.22
CLN6-216ENST00000636876 IL4RP24394 825 aa16.44■□□□□ 0.22
CLN6-216ENST00000636876 OR1E1P30953 314 aa16.44■□□□□ 0.22
CLN6-216ENST00000636876 HOXD11P31277 338 aaPredicted RBP16.44■□□□□ 0.22
CLN6-216ENST00000636876 CD70P32970 193 aa16.44■□□□□ 0.22
CLN6-216ENST00000636876 PEX5P50542 639 aa16.44■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms