RNA–Protein interactions for RNA: ENST00000636355.1

CLN3-248, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 975 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-248ENST00000636355 F5H5T6 163 aa10.86□□□□□ -0.67
CLN3-248ENST00000636355 RIPK2O43353 540 aa10.86□□□□□ -0.67
CLN3-248ENST00000636355 TCEA3O75764 348 aa10.86□□□□□ -0.67
CLN3-248ENST00000636355 CXCL14O95715 111 aa10.86□□□□□ -0.67
CLN3-248ENST00000636355 TTC4O95801 387 aa10.86□□□□□ -0.67
CLN3-248ENST00000636355 MOCS2O96007 188 aaPredicted RBP10.86□□□□□ -0.67
CLN3-248ENST00000636355 F11P03951 625 aa10.86□□□□□ -0.67
CLN3-248ENST00000636355 C8AP07357 584 aa10.86□□□□□ -0.67
CLN3-248ENST00000636355 IVLP07476 585 aa10.86□□□□□ -0.67
CLN3-248ENST00000636355 GOLGA6DP0CG33 693 aa10.86□□□□□ -0.67
CLN3-248ENST00000636355 SYN1P17600 705 aa10.86□□□□□ -0.67
CLN3-248ENST00000636355 CCNCP24863 283 aa10.86□□□□□ -0.67
CLN3-248ENST00000636355 YBEYP58557 167 aaPredicted RBP10.86□□□□□ -0.67
CLN3-248ENST00000636355 BASP1P80723 227 aaKnown RBP10.86□□□□□ -0.67
CLN3-248ENST00000636355 SARNPP82979 210 aaKnown RBP10.86□□□□□ -0.67
CLN3-248ENST00000636355 AUHQ13825 339 aaKnown RBP10.86□□□□□ -0.67
CLN3-248ENST00000636355 ANO4Q32M45 955 aa10.86□□□□□ -0.67
CLN3-248ENST00000636355 RABGAP1LQ5R372 815 aa10.86□□□□□ -0.67
CLN3-248ENST00000636355 RWDD4Q6NW29 188 aaKnown RBP10.86□□□□□ -0.67
CLN3-248ENST00000636355 CHST9Q7L1S5 443 aa10.86□□□□□ -0.67
CLN3-248ENST00000636355 MIB1Q86YT6 1006 aa10.86□□□□□ -0.67
CLN3-248ENST00000636355 TMC8Q8IU68 726 aa10.86□□□□□ -0.67
CLN3-248ENST00000636355 KLHDC8BQ8IXV7 354 aa10.86□□□□□ -0.67
CLN3-248ENST00000636355 CCDC13Q8IYE1 715 aa10.86□□□□□ -0.67
CLN3-248ENST00000636355 KREMEN2Q8NCW0 462 aa10.86□□□□□ -0.67
CLN3-248ENST00000636355 SPPL3Q8TCT6 385 aa10.86□□□□□ -0.67
CLN3-248ENST00000636355 UBLCP1Q8WVY7 318 aaPredicted RBP10.86□□□□□ -0.67
CLN3-248ENST00000636355 AUTS2Q8WXX7 1259 aa10.86□□□□□ -0.67
CLN3-248ENST00000636355 MRPS31Q92665 395 aaKnown RBP10.86□□□□□ -0.67
CLN3-248ENST00000636355 DPF3Q92784 378 aa10.86□□□□□ -0.67
CLN3-248ENST00000636355 P2RY11Q96G91 374 aa10.86□□□□□ -0.67
CLN3-248ENST00000636355 GDAP1L1Q96MZ0 367 aa10.86□□□□□ -0.67
CLN3-248ENST00000636355 ZIM3Q96PE6 472 aa10.86□□□□□ -0.67
CLN3-248ENST00000636355 IL21Q9HBE4 155 aa10.86□□□□□ -0.67
CLN3-248ENST00000636355 RAB6BQ9NRW1 208 aa10.86□□□□□ -0.67
CLN3-248ENST00000636355 GOLGA6AQ9NYA3 693 aa10.86□□□□□ -0.67
CLN3-248ENST00000636355 FETUBQ9UGM5 382 aa10.86□□□□□ -0.67
CLN3-248ENST00000636355 ZMYND8Q9ULU4 1186 aaPredicted RBP10.86□□□□□ -0.67
CLN3-248ENST00000636355 PLAAQ9Y263 795 aa10.86□□□□□ -0.67
CLN3-248ENST00000636355 ARHGAP42A6NI28 874 aa10.85□□□□□ -0.67
CLN3-248ENST00000636355 H0YGN5 161 aa10.85□□□□□ -0.67
CLN3-248ENST00000636355 AP3B1O00203 1094 aa10.85□□□□□ -0.67
CLN3-248ENST00000636355 ACSL4O60488 711 aa10.85□□□□□ -0.67
CLN3-248ENST00000636355 XYLBO75191 536 aa10.85□□□□□ -0.67
CLN3-248ENST00000636355 STC2O76061 302 aa10.85□□□□□ -0.67
CLN3-248ENST00000636355 ZSCAN5DPP0CG00 497 aa10.85□□□□□ -0.67
CLN3-248ENST00000636355 VAV1P15498 845 aa10.85□□□□□ -0.67
CLN3-248ENST00000636355 ETFBP38117 255 aa10.85□□□□□ -0.67
CLN3-248ENST00000636355 MAGEA3P43357 314 aa10.85□□□□□ -0.67
CLN3-248ENST00000636355 IFNAR2P48551 515 aa10.85□□□□□ -0.67
CLN3-248ENST00000636355 CLCN4P51793 760 aa10.85□□□□□ -0.67
CLN3-248ENST00000636355 ERVK-21P61565 698 aa10.85□□□□□ -0.67
CLN3-248ENST00000636355 SLC7A9P82251 487 aa10.85□□□□□ -0.67
CLN3-248ENST00000636355 TNK2Q07912 1038 aa10.85□□□□□ -0.67
CLN3-248ENST00000636355 AP1B1Q10567 949 aa10.85□□□□□ -0.67
CLN3-248ENST00000636355 RAB30Q15771 203 aa10.85□□□□□ -0.67
CLN3-248ENST00000636355 PARP6Q2NL67 630 aa10.85□□□□□ -0.67
CLN3-248ENST00000636355 DNAJC21Q5F1R6 531 aaKnown RBP10.85□□□□□ -0.67
CLN3-248ENST00000636355 ANKRD20A2Q5SQ80 823 aa10.85□□□□□ -0.67
CLN3-248ENST00000636355 TMCO4Q5TGY1 634 aa10.85□□□□□ -0.67
CLN3-248ENST00000636355 ANKRD20A1Q5TYW2 823 aa10.85□□□□□ -0.67
CLN3-248ENST00000636355 ANKRD20A3Q5VUR7 823 aa10.85□□□□□ -0.67
CLN3-248ENST00000636355 ZNF783Q6ZMS7 281 aa10.85□□□□□ -0.67
CLN3-248ENST00000636355 TMEM150AQ86TG1 271 aa10.85□□□□□ -0.67
CLN3-248ENST00000636355 CHSY1Q86X52 802 aa10.85□□□□□ -0.67
CLN3-248ENST00000636355 ARHGAP12Q8IWW6 846 aa10.85□□□□□ -0.67
CLN3-248ENST00000636355 FAM217AQ8IXS0 508 aa10.85□□□□□ -0.67
CLN3-248ENST00000636355 RIBC1Q8N443 379 aaPredicted RBP10.85□□□□□ -0.67
CLN3-248ENST00000636355 KIAA1958Q8N8K9 716 aa10.85□□□□□ -0.67
CLN3-248ENST00000636355 ATP11CQ8NB49 1132 aa10.85□□□□□ -0.67
CLN3-248ENST00000636355 CCNYQ8ND76 341 aa10.85□□□□□ -0.67
CLN3-248ENST00000636355 POF1BQ8WVV4 589 aa10.85□□□□□ -0.67
CLN3-248ENST00000636355 LGMNQ99538 433 aa10.85□□□□□ -0.67
CLN3-248ENST00000636355 KLF16Q9BXK1 252 aaPredicted RBP10.85□□□□□ -0.67
CLN3-248ENST00000636355 ROPN1BQ9BZX4 212 aaPredicted RBP10.85□□□□□ -0.67
CLN3-248ENST00000636355 SIK2Q9H0K1 926 aa10.85□□□□□ -0.67
CLN3-248ENST00000636355 STMN4Q9H169 189 aaPredicted RBP10.85□□□□□ -0.67
CLN3-248ENST00000636355 GBA3Q9H227 469 aa10.85□□□□□ -0.67
CLN3-248ENST00000636355 EPB41L4BQ9H329 900 aa10.85□□□□□ -0.67
CLN3-248ENST00000636355 CDC42EP4Q9H3Q1 356 aaKnown RBP10.85□□□□□ -0.67
CLN3-248ENST00000636355 ROPN1Q9HAT0 212 aaPredicted RBP10.85□□□□□ -0.67
CLN3-248ENST00000636355 ASAH2Q9NR71 780 aa10.85□□□□□ -0.67
CLN3-248ENST00000636355 ZDHHC7Q9NXF8 308 aa10.85□□□□□ -0.67
CLN3-248ENST00000636355 NUDT5Q9UKK9 219 aa10.85□□□□□ -0.67
CLN3-248ENST00000636355 ZNF510Q9Y2H8 683 aa10.85□□□□□ -0.67
CLN3-248ENST00000636355 MFHAS1Q9Y4C4 1052 aa10.85□□□□□ -0.67
CLN3-248ENST00000636355 NFS1Q9Y697 457 aa10.85□□□□□ -0.67
CLN3-248ENST00000636355 CEP290O15078 2479 aa10.85□□□□□ -0.67
CLN3-248ENST00000636355 A0A1B0GVM2 712 aa10.84□□□□□ -0.67
CLN3-248ENST00000636355 TCAF2A6NFQ2 919 aa10.84□□□□□ -0.67
CLN3-248ENST00000636355 HMGB1P1B2RPK0 211 aaPredicted RBP10.84□□□□□ -0.67
CLN3-248ENST00000636355 H3BNC9 293 aa10.84□□□□□ -0.67
CLN3-248ENST00000636355 AGPSO00116 658 aa10.84□□□□□ -0.67
CLN3-248ENST00000636355 ALOX15BO15296 676 aa10.84□□□□□ -0.67
CLN3-248ENST00000636355 PSMD3O43242 534 aa10.84□□□□□ -0.67
CLN3-248ENST00000636355 CLDN11O75508 207 aa10.84□□□□□ -0.67
CLN3-248ENST00000636355 TMEM63AO94886 807 aa10.84□□□□□ -0.67
CLN3-248ENST00000636355 TBX18O95935 607 aa10.84□□□□□ -0.67
CLN3-248ENST00000636355 GSTA2P09210 222 aa10.84□□□□□ -0.67
CLN3-248ENST00000636355 MYZAPP0CAP1 466 aa10.84□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms