RNA–Protein interactions for RNA: ENST00000627371.1

PTCD3-220, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 5 BASIC

Gene PTCD3, Length 210 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-220ENST00000627371 USP18Q9UMW8 372 aa20.91■□□□□ 0.94
PTCD3-220ENST00000627371 NEU3Q9UQ49 428 aa20.91■□□□□ 0.94
PTCD3-220ENST00000627371 PCDHA13Q9Y5I0 950 aa20.91■□□□□ 0.94
PTCD3-220ENST00000627371 FANCMQ8IYD8 2048 aa20.9■□□□□ 0.94
PTCD3-220ENST00000627371 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP20.9■□□□□ 0.94
PTCD3-220ENST00000627371 FAM72CH0Y354 149 aa20.9■□□□□ 0.94
PTCD3-220ENST00000627371 TIMM44O43615 452 aa20.9■□□□□ 0.94
PTCD3-220ENST00000627371 LRIG2O94898 1065 aa20.9■□□□□ 0.94
PTCD3-220ENST00000627371 IPO7O95373 1038 aaKnown RBP20.9■□□□□ 0.94
PTCD3-220ENST00000627371 CXCL12P48061 93 aa20.9■□□□□ 0.94
PTCD3-220ENST00000627371 OXCT1P55809 520 aa20.9■□□□□ 0.94
PTCD3-220ENST00000627371 SATB1Q01826 763 aa20.9■□□□□ 0.94
PTCD3-220ENST00000627371 ZNF177Q13360 481 aaPredicted RBP20.9■□□□□ 0.94
PTCD3-220ENST00000627371 SLC12A1Q13621 1099 aa20.9■□□□□ 0.94
PTCD3-220ENST00000627371 TCEAL1Q15170 157 aa20.9■□□□□ 0.94
PTCD3-220ENST00000627371 ANGPT1Q15389 498 aa20.9■□□□□ 0.94
PTCD3-220ENST00000627371 FUT11Q495W5 492 aa20.9■□□□□ 0.94
PTCD3-220ENST00000627371 ERMARDQ5T6L9 678 aa20.9■□□□□ 0.94
PTCD3-220ENST00000627371 FAM72AQ5TYM5 149 aa20.9■□□□□ 0.94
PTCD3-220ENST00000627371 FAM72DQ6L9T8 149 aa20.9■□□□□ 0.94
PTCD3-220ENST00000627371 SYT13Q7L8C5 426 aa20.9■□□□□ 0.94
PTCD3-220ENST00000627371 FAM72BQ86X60 149 aa20.9■□□□□ 0.94
PTCD3-220ENST00000627371 PSTKQ8IV42 348 aaKnown RBP20.9■□□□□ 0.94
PTCD3-220ENST00000627371 MAML2Q8IZL2 1156 aaPredicted RBP20.9■□□□□ 0.94
PTCD3-220ENST00000627371 PYROXD2Q8N2H3 581 aa20.9■□□□□ 0.94
PTCD3-220ENST00000627371 ALLCQ8N6M5 410 aa20.9■□□□□ 0.94
PTCD3-220ENST00000627371 TBC1D31Q96DN5 1066 aa20.9■□□□□ 0.94
PTCD3-220ENST00000627371 SNRNP25Q9BV90 132 aaKnown RBP20.9■□□□□ 0.94
PTCD3-220ENST00000627371 CIPCQ9C0C6 399 aa20.9■□□□□ 0.94
PTCD3-220ENST00000627371 ZDHHC4Q9NPG8 344 aa20.9■□□□□ 0.94
PTCD3-220ENST00000627371 MMP17Q9ULZ9 603 aa20.9■□□□□ 0.94
PTCD3-220ENST00000627371 AP4E1Q9UPM8 1137 aa20.9■□□□□ 0.94
PTCD3-220ENST00000627371 TBC1D30Q9Y2I9 924 aa20.9■□□□□ 0.94
PTCD3-220ENST00000627371 HCN4Q9Y3Q4 1203 aa20.9■□□□□ 0.94
PTCD3-220ENST00000627371 NPC1O15118 1278 aa20.89■□□□□ 0.93
PTCD3-220ENST00000627371 PROSCO94903 275 aa20.89■□□□□ 0.93
PTCD3-220ENST00000627371 KLF8O95600 359 aaPredicted RBP20.89■□□□□ 0.93
PTCD3-220ENST00000627371 HNRNPLP14866 589 aaKnown RBP eCLIP20.89■□□□□ 0.93
PTCD3-220ENST00000627371 MRE11P49959 708 aa20.89■□□□□ 0.93
PTCD3-220ENST00000627371 SEMA3BQ13214 749 aa20.89■□□□□ 0.93
PTCD3-220ENST00000627371 DMC1Q14565 340 aa20.89■□□□□ 0.93
PTCD3-220ENST00000627371 E2F5Q15329 346 aa20.89■□□□□ 0.93
PTCD3-220ENST00000627371 MBLAC2Q68D91 279 aa20.89■□□□□ 0.93
PTCD3-220ENST00000627371 CCDC33Q8N5R6 958 aa20.89■□□□□ 0.93
PTCD3-220ENST00000627371 TXNDC5Q8NBS9 432 aaKnown RBP20.89■□□□□ 0.93
PTCD3-220ENST00000627371 PRSS33Q8NF86 280 aa20.89■□□□□ 0.93
PTCD3-220ENST00000627371 EPAS1Q99814 870 aa20.89■□□□□ 0.93
PTCD3-220ENST00000627371 RETREG1Q9H6L5 497 aa20.89■□□□□ 0.93
PTCD3-220ENST00000627371 GPATCH2LQ9NWQ4 482 aa20.89■□□□□ 0.93
PTCD3-220ENST00000627371 ZNF212Q9UDV6 495 aa20.89■□□□□ 0.93
PTCD3-220ENST00000627371 FBXO4Q9UKT5 387 aa20.89■□□□□ 0.93
PTCD3-220ENST00000627371 INTS6Q9UL03 887 aaKnown RBP20.89■□□□□ 0.93
PTCD3-220ENST00000627371 MUC6Q6W4X9 2439 aa20.89■□□□□ 0.93
PTCD3-220ENST00000627371 CACNA1HO95180 2353 aa20.88■□□□□ 0.93
PTCD3-220ENST00000627371 NYNRINQ9P2P1 1898 aaKnown RBP20.88■□□□□ 0.93
PTCD3-220ENST00000627371 ADAM23O75077 832 aa20.88■□□□□ 0.93
PTCD3-220ENST00000627371 MOCS3O95396 460 aa20.88■□□□□ 0.93
PTCD3-220ENST00000627371 TCF4P15884 667 aa20.88■□□□□ 0.93
PTCD3-220ENST00000627371 IL1R2P27930 398 aa20.88■□□□□ 0.93
PTCD3-220ENST00000627371 HOXC13P31276 330 aa20.88■□□□□ 0.93
PTCD3-220ENST00000627371 MAN1A1P33908 653 aa20.88■□□□□ 0.93
PTCD3-220ENST00000627371 CSKP41240 450 aa20.88■□□□□ 0.93
PTCD3-220ENST00000627371 SLC25A11Q02978 314 aaKnown RBP20.88■□□□□ 0.93
PTCD3-220ENST00000627371 PLEKHG6Q3KR16 790 aa20.88■□□□□ 0.93
PTCD3-220ENST00000627371 PITRM1Q5JRX3 1037 aa20.88■□□□□ 0.93
PTCD3-220ENST00000627371 EOGTQ5NDL2 527 aa20.88■□□□□ 0.93
PTCD3-220ENST00000627371 RWDD4Q6NW29 188 aaKnown RBP20.88■□□□□ 0.93
PTCD3-220ENST00000627371 TFAP2DQ7Z6R9 452 aa20.88■□□□□ 0.93
PTCD3-220ENST00000627371 SETD3Q86TU7 594 aaPredicted RBP20.88■□□□□ 0.93
PTCD3-220ENST00000627371 TTC17Q96AE7 1141 aa20.88■□□□□ 0.93
PTCD3-220ENST00000627371 DHX35Q9H5Z1 703 aaKnown RBP20.88■□□□□ 0.93
PTCD3-220ENST00000627371 THAP10Q9P2Z0 257 aaPredicted RBP20.88■□□□□ 0.93
PTCD3-220ENST00000627371 REXO2Q9Y3B8 237 aaKnown RBP20.88■□□□□ 0.93
PTCD3-220ENST00000627371 SGK1O00141 431 aa20.87■□□□□ 0.93
PTCD3-220ENST00000627371 ATP5BP06576 529 aaKnown RBP20.87■□□□□ 0.93
PTCD3-220ENST00000627371 RHOCP08134 193 aa20.87■□□□□ 0.93
PTCD3-220ENST00000627371 RHOQP17081 205 aa20.87■□□□□ 0.93
PTCD3-220ENST00000627371 POLR2EP19388 210 aaKnown RBP20.87■□□□□ 0.93
PTCD3-220ENST00000627371 NTSR1P30989 418 aa20.87■□□□□ 0.93
PTCD3-220ENST00000627371 HTR7P34969 479 aa20.87■□□□□ 0.93
PTCD3-220ENST00000627371 ARHGAP25P42331 645 aa20.87■□□□□ 0.93
PTCD3-220ENST00000627371 PLK1P53350 603 aa20.87■□□□□ 0.93
PTCD3-220ENST00000627371 TCF15Q12870 199 aa20.87■□□□□ 0.93
PTCD3-220ENST00000627371 CA9Q16790 459 aa20.87■□□□□ 0.93
PTCD3-220ENST00000627371 BOLA3Q53S33 107 aa20.87■□□□□ 0.93
PTCD3-220ENST00000627371 C6orf118Q5T5N4 469 aa20.87■□□□□ 0.93
PTCD3-220ENST00000627371 NLRP14Q86W24 1093 aa20.87■□□□□ 0.93
PTCD3-220ENST00000627371 CHPFQ8IZ52 775 aa20.87■□□□□ 0.93
PTCD3-220ENST00000627371 APCDD1Q8J025 514 aa20.87■□□□□ 0.93
PTCD3-220ENST00000627371 OR52K2Q8NGK3 314 aa20.87■□□□□ 0.93
PTCD3-220ENST00000627371 SORCS1Q8WY21 1168 aa20.87■□□□□ 0.93
PTCD3-220ENST00000627371 PPP1R9BQ96SB3 815 aa20.87■□□□□ 0.93
PTCD3-220ENST00000627371 ACOX2Q99424 681 aa20.87■□□□□ 0.93
PTCD3-220ENST00000627371 POLR3BQ9NW08 1133 aaPredicted RBP20.87■□□□□ 0.93
PTCD3-220ENST00000627371 TMEM248Q9NWD8 314 aa20.87■□□□□ 0.93
PTCD3-220ENST00000627371 SLC8A2Q9UPR5 921 aa20.87■□□□□ 0.93
PTCD3-220ENST00000627371 EML5Q05BV3 1969 aa20.86■□□□□ 0.93
PTCD3-220ENST00000627371 A0A0A6YYK5 440 aaPredicted RBP20.86■□□□□ 0.93
PTCD3-220ENST00000627371 K7ESF4 209 aa20.86■□□□□ 0.93
PTCD3-220ENST00000627371 CREB3O43889 395 aa20.86■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms