RNA–Protein interactions for RNA: ENST00000622516.4

CUX1-221, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-221ENST00000622516 NLRP9Q7RTR0 991 aa10.89□□□□□ -0.67
CUX1-221ENST00000622516 CEP57Q86XR8 500 aa10.89□□□□□ -0.67
CUX1-221ENST00000622516 PSTKQ8IV42 348 aaKnown RBP10.89□□□□□ -0.67
CUX1-221ENST00000622516 KLHDC9Q8NEP7 349 aa10.89□□□□□ -0.67
CUX1-221ENST00000622516 LRRC39Q96DD0 335 aa10.89□□□□□ -0.67
CUX1-221ENST00000622516 MFSD3Q96ES6 412 aa10.89□□□□□ -0.67
CUX1-221ENST00000622516 AGAP2Q99490 1192 aa10.89□□□□□ -0.67
CUX1-221ENST00000622516 C20orf27Q9GZN8 174 aa10.89□□□□□ -0.67
CUX1-221ENST00000622516 CSNK1G1Q9HCP0 422 aa10.89□□□□□ -0.67
CUX1-221ENST00000622516 DONSONQ9NYP3 566 aa10.89□□□□□ -0.67
CUX1-221ENST00000622516 HCSTQ9UBK5 93 aa10.89□□□□□ -0.67
CUX1-221ENST00000622516 PLLPQ9Y342 182 aa10.89□□□□□ -0.67
CUX1-221ENST00000622516 GSTA1P08263 222 aa10.89□□□□□ -0.67
CUX1-221ENST00000622516 NFKB1P19838 968 aa10.89□□□□□ -0.67
CUX1-221ENST00000622516 GRK4P32298 578 aa10.89□□□□□ -0.67
CUX1-221ENST00000622516 ARPP19P56211 112 aa10.89□□□□□ -0.67
CUX1-221ENST00000622516 YWHAHQ04917 246 aaPredicted RBP10.89□□□□□ -0.67
CUX1-221ENST00000622516 LGSNQ5TDP6 509 aa10.89□□□□□ -0.67
CUX1-221ENST00000622516 SPATA22Q8NHS9 363 aa10.89□□□□□ -0.67
CUX1-221ENST00000622516 CASP10Q92851 521 aa10.89□□□□□ -0.67
CUX1-221ENST00000622516 NMUR1Q9HB89 426 aa10.89□□□□□ -0.67
CUX1-221ENST00000622516 MPP6Q9NZW5 540 aa10.89□□□□□ -0.67
CUX1-221ENST00000622516 PDE4DIPQ5VU43 2346 aa10.89□□□□□ -0.67
CUX1-221ENST00000622516 TPP1O14773 563 aa10.89□□□□□ -0.67
CUX1-221ENST00000622516 ALDOAP04075 364 aaKnown RBP10.89□□□□□ -0.67
CUX1-221ENST00000622516 DHRS4L1P0CG22 281 aa10.89□□□□□ -0.67
CUX1-221ENST00000622516 NQO1P15559 274 aaKnown RBP10.89□□□□□ -0.67
CUX1-221ENST00000622516 PBX3P40426 434 aa10.89□□□□□ -0.67
CUX1-221ENST00000622516 CXCR3P49682 368 aa10.89□□□□□ -0.67
CUX1-221ENST00000622516 ACLYP53396 1101 aa10.89□□□□□ -0.67
CUX1-221ENST00000622516 TMPRSS15P98073 1019 aa10.89□□□□□ -0.67
CUX1-221ENST00000622516 E2F5Q15329 346 aa10.89□□□□□ -0.67
CUX1-221ENST00000622516 CHI3L2Q15782 390 aa10.89□□□□□ -0.67
CUX1-221ENST00000622516 FYB2Q5VWT5 728 aa10.89□□□□□ -0.67
CUX1-221ENST00000622516 C4orf22Q6V702 233 aa10.89□□□□□ -0.67
CUX1-221ENST00000622516 SPATA2LQ8IUW3 424 aaPredicted RBP10.89□□□□□ -0.67
CUX1-221ENST00000622516 SPNS2Q8IVW8 549 aa10.89□□□□□ -0.67
CUX1-221ENST00000622516 TTC9BQ8N6N2 239 aa10.89□□□□□ -0.67
CUX1-221ENST00000622516 ZNF419Q96HQ0 510 aaPredicted RBP10.89□□□□□ -0.67
CUX1-221ENST00000622516 ZNF778Q96MU6 729 aa10.89□□□□□ -0.67
CUX1-221ENST00000622516 CHRAC1Q9NRG0 131 aa10.89□□□□□ -0.67
CUX1-221ENST00000622516 ZNF358Q9NW07 568 aa10.89□□□□□ -0.67
CUX1-221ENST00000622516 HEY2Q9UBP5 337 aa10.89□□□□□ -0.67
CUX1-221ENST00000622516 MT-CYBP00156 380 aaPredicted RBP10.88□□□□□ -0.67
CUX1-221ENST00000622516 CKBP12277 381 aa10.88□□□□□ -0.67
CUX1-221ENST00000622516 ALADP13716 330 aa10.88□□□□□ -0.67
CUX1-221ENST00000622516 GARSP41250 739 aaKnown RBP10.88□□□□□ -0.67
CUX1-221ENST00000622516 BST1Q10588 318 aa10.88□□□□□ -0.67
CUX1-221ENST00000622516 GRIK3Q13003 919 aa10.88□□□□□ -0.67
CUX1-221ENST00000622516 BTBD8Q5XKL5 378 aa10.88□□□□□ -0.67
CUX1-221ENST00000622516 CMC1Q7Z7K0 106 aa10.88□□□□□ -0.67
CUX1-221ENST00000622516 SMC1BQ8NDV3 1235 aa10.88□□□□□ -0.67
CUX1-221ENST00000622516 NTAN1Q96AB6 310 aa10.88□□□□□ -0.67
CUX1-221ENST00000622516 ZNF669Q96BR6 464 aaPredicted RBP10.88□□□□□ -0.67
CUX1-221ENST00000622516 SLC9A7Q96T83 725 aa10.88□□□□□ -0.67
CUX1-221ENST00000622516 EPAS1Q99814 870 aa10.88□□□□□ -0.67
CUX1-221ENST00000622516 FERMT1Q9BQL6 677 aa10.88□□□□□ -0.67
CUX1-221ENST00000622516 MLPHQ9BV36 600 aaPredicted RBP10.88□□□□□ -0.67
CUX1-221ENST00000622516 OSER1Q9NX31 292 aa10.88□□□□□ -0.67
CUX1-221ENST00000622516 ZFATQ9P243 1243 aa10.88□□□□□ -0.67
CUX1-221ENST00000622516 ZNF180Q9UJW8 692 aa10.88□□□□□ -0.67
CUX1-221ENST00000622516 ARHGAP42A6NI28 874 aa10.88□□□□□ -0.67
CUX1-221ENST00000622516 UNC5CO95185 931 aa10.88□□□□□ -0.67
CUX1-221ENST00000622516 T-ENOLP0DO92 83 aa10.88□□□□□ -0.67
CUX1-221ENST00000622516 SERPINB3P29508 390 aa10.88□□□□□ -0.67
CUX1-221ENST00000622516 ALDH3A1P30838 453 aa10.88□□□□□ -0.67
CUX1-221ENST00000622516 GATMP50440 423 aa10.88□□□□□ -0.67
CUX1-221ENST00000622516 PDE1BQ01064 536 aa10.88□□□□□ -0.67
CUX1-221ENST00000622516 TSPY1Q01534 308 aa10.88□□□□□ -0.67
CUX1-221ENST00000622516 PPIDQ08752 370 aaKnown RBP10.88□□□□□ -0.67
CUX1-221ENST00000622516 SCAPQ12770 1279 aa10.88□□□□□ -0.67
CUX1-221ENST00000622516 HSP90AA5PQ58FG0 334 aa10.88□□□□□ -0.67
CUX1-221ENST00000622516 CLLU1OSQ5K130 101 aa10.88□□□□□ -0.67
CUX1-221ENST00000622516 PM20D1Q6GTS8 502 aa10.88□□□□□ -0.67
CUX1-221ENST00000622516 PACS1Q6VY07 963 aa10.88□□□□□ -0.67
CUX1-221ENST00000622516 TTC7BQ86TV6 843 aa10.88□□□□□ -0.67
CUX1-221ENST00000622516 NUDCD3Q8IVD9 361 aa10.88□□□□□ -0.67
CUX1-221ENST00000622516 THEM5Q8N1Q8 247 aa10.88□□□□□ -0.67
CUX1-221ENST00000622516 GBP7Q8N8V2 638 aaPredicted RBP10.88□□□□□ -0.67
CUX1-221ENST00000622516 PKMYT1Q99640 499 aa10.88□□□□□ -0.67
CUX1-221ENST00000622516 ATXN3LQ9H3M9 355 aa10.88□□□□□ -0.67
CUX1-221ENST00000622516 KCNK13Q9HB14 408 aa10.88□□□□□ -0.67
CUX1-221ENST00000622516 C9IYK1 514 aa10.87□□□□□ -0.67
CUX1-221ENST00000622516 M0QZQ0 153 aa10.87□□□□□ -0.67
CUX1-221ENST00000622516 PAGE1O75459 146 aa10.87□□□□□ -0.67
CUX1-221ENST00000622516 TRPA1O75762 1119 aa10.87□□□□□ -0.67
CUX1-221ENST00000622516 TBX18O95935 607 aa10.87□□□□□ -0.67
CUX1-221ENST00000622516 TROVE2P10155 538 aaKnown RBP eCLIP10.87□□□□□ -0.673e-6■■□□□ 11.8
CUX1-221ENST00000622516 PGAM1P18669 254 aa10.87□□□□□ -0.67
CUX1-221ENST00000622516 SAT1P21673 171 aa10.87□□□□□ -0.67
CUX1-221ENST00000622516 SNCBQ16143 134 aa10.87□□□□□ -0.67
CUX1-221ENST00000622516 TRIM71Q2Q1W2 868 aaKnown RBP10.87□□□□□ -0.67
CUX1-221ENST00000622516 RASSF3Q86WH2 238 aa10.87□□□□□ -0.67
CUX1-221ENST00000622516 CNTD1Q8N815 330 aa10.87□□□□□ -0.67
CUX1-221ENST00000622516 ZNF513Q8N8E2 541 aaPredicted RBP10.87□□□□□ -0.67
CUX1-221ENST00000622516 ATAD1Q8NBU5 361 aa10.87□□□□□ -0.67
CUX1-221ENST00000622516 TMEM120AQ9BXJ8 343 aa10.87□□□□□ -0.67
CUX1-221ENST00000622516 TRIM55Q9BYV6 548 aa10.87□□□□□ -0.67
CUX1-221ENST00000622516 CAB39LQ9H9S4 337 aa10.87□□□□□ -0.67
CUX1-221ENST00000622516 ACSS2Q9NR19 701 aa10.87□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms