RNA–Protein interactions for RNA: ENST00000601341.5

VRK3-223, Transcript of vaccinia related kinase 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene VRK3, Length 1,777 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-223ENST00000601341 UHMK1Q8TAS1 419 aaKnown RBP12.05□□□□□ -0.48
VRK3-223ENST00000601341 ZNF670Q9BS34 389 aa12.05□□□□□ -0.48
VRK3-223ENST00000601341 PCDH18Q9HCL0 1135 aa12.05□□□□□ -0.48
VRK3-223ENST00000601341 NUDT5Q9UKK9 219 aa12.05□□□□□ -0.48
VRK3-223ENST00000601341 SMG5Q9UPR3 1016 aaKnown RBP12.05□□□□□ -0.48
VRK3-223ENST00000601341 COL4A4P53420 1690 aaPredicted RBP12.05□□□□□ -0.48
VRK3-223ENST00000601341 PLXNA4Q9HCM2 1894 aa12.04□□□□□ -0.48
VRK3-223ENST00000601341 FAM47DPA6NHR8 397 aa12.04□□□□□ -0.48
VRK3-223ENST00000601341 ARL4AP40617 200 aa12.04□□□□□ -0.48
VRK3-223ENST00000601341 KPNA1P52294 538 aaPredicted RBP12.04□□□□□ -0.48
VRK3-223ENST00000601341 IL9RQ01113 521 aa12.04□□□□□ -0.48
VRK3-223ENST00000601341 EFEMP1Q12805 493 aa12.04□□□□□ -0.48
VRK3-223ENST00000601341 TFDP2Q14188 446 aa12.04□□□□□ -0.48
VRK3-223ENST00000601341 PPP2R5DQ14738 602 aa12.04□□□□□ -0.48
VRK3-223ENST00000601341 KCTD19Q17RG1 926 aaPredicted RBP12.04□□□□□ -0.48
VRK3-223ENST00000601341 PABPC1LQ4VXU2 614 aaKnown RBP12.04□□□□□ -0.48
VRK3-223ENST00000601341 HECTD3Q5T447 861 aa12.04□□□□□ -0.48
VRK3-223ENST00000601341 FBXW10Q5XX13 1052 aa12.04□□□□□ -0.48
VRK3-223ENST00000601341 TKTL2Q9H0I9 626 aa12.04□□□□□ -0.48
VRK3-223ENST00000601341 LMAN2LQ9H0V9 348 aa12.04□□□□□ -0.48
VRK3-223ENST00000601341 CERS4Q9HA82 394 aa12.04□□□□□ -0.48
VRK3-223ENST00000601341 KLC4Q9NSK0 619 aa12.04□□□□□ -0.48
VRK3-223ENST00000601341 HAUS2Q9NVX0 235 aa12.04□□□□□ -0.48
VRK3-223ENST00000601341 MTMR10Q9NXD2 777 aa12.04□□□□□ -0.48
VRK3-223ENST00000601341 MARCH2Q9P0N8 246 aa12.04□□□□□ -0.48
VRK3-223ENST00000601341 RCOR3Q9P2K3 495 aaPredicted RBP12.04□□□□□ -0.48
VRK3-223ENST00000601341 DPP7Q9UHL4 492 aa12.04□□□□□ -0.48
VRK3-223ENST00000601341 TLR6Q9Y2C9 796 aa12.04□□□□□ -0.48
VRK3-223ENST00000601341 ARL2BPQ9Y2Y0 163 aa12.04□□□□□ -0.48
VRK3-223ENST00000601341 FARP1Q9Y4F1 1045 aaPredicted RBP12.04□□□□□ -0.48
VRK3-223ENST00000601341 EXOC1LA0A1B0GW35 172 aa12.03□□□□□ -0.48
VRK3-223ENST00000601341 MSI1O43347 362 aaKnown RBP12.03□□□□□ -0.48
VRK3-223ENST00000601341 CST8O60676 142 aa12.03□□□□□ -0.48
VRK3-223ENST00000601341 CLASP2O75122 1294 aaKnown RBP12.03□□□□□ -0.48
VRK3-223ENST00000601341 TBX18O95935 607 aa12.03□□□□□ -0.48
VRK3-223ENST00000601341 ATP5C1P36542 298 aaKnown RBP12.03□□□□□ -0.48
VRK3-223ENST00000601341 TUBP50607 506 aa12.03□□□□□ -0.48
VRK3-223ENST00000601341 ZNF135P52742 658 aaPredicted RBP12.03□□□□□ -0.48
VRK3-223ENST00000601341 CCDC15Q0P6D6 951 aa12.03□□□□□ -0.48
VRK3-223ENST00000601341 GPS1Q13098 491 aa12.03□□□□□ -0.48
VRK3-223ENST00000601341 PPM1LQ5SGD2 360 aa12.03□□□□□ -0.48
VRK3-223ENST00000601341 KLHDC10Q6PID8 442 aa12.03□□□□□ -0.48
VRK3-223ENST00000601341 TRABD2AQ86V40 505 aa12.03□□□□□ -0.48
VRK3-223ENST00000601341 RFX6Q8HWS3 928 aa12.03□□□□□ -0.48
VRK3-223ENST00000601341 PPIL6Q8IXY8 311 aa12.03□□□□□ -0.48
VRK3-223ENST00000601341 TRAF3IP1Q8TDR0 691 aaPredicted RBP12.03□□□□□ -0.48
VRK3-223ENST00000601341 ARNTL2Q8WYA1 636 aa12.03□□□□□ -0.48
VRK3-223ENST00000601341 RNF157Q96PX1 679 aa12.03□□□□□ -0.48
VRK3-223ENST00000601341 ELAC2Q9BQ52 826 aaKnown RBP12.03□□□□□ -0.48
VRK3-223ENST00000601341 TACO1Q9BSH4 297 aaKnown RBP12.03□□□□□ -0.48
VRK3-223ENST00000601341 NACA2Q9H009 215 aa12.03□□□□□ -0.48
VRK3-223ENST00000601341 CCSER2Q9H7U1 834 aa12.03□□□□□ -0.48
VRK3-223ENST00000601341 PRDM16Q9HAZ2 1276 aa12.03□□□□□ -0.48
VRK3-223ENST00000601341 SLC40A1Q9NP59 571 aa12.03□□□□□ -0.48
VRK3-223ENST00000601341 ARHGEF38Q9NXL2 777 aa12.03□□□□□ -0.48
VRK3-223ENST00000601341 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP12.02□□□□□ -0.48
VRK3-223ENST00000601341 RASA4BC9J798 803 aa12.02□□□□□ -0.48
VRK3-223ENST00000601341 E7ESA3 106 aa12.02□□□□□ -0.48
VRK3-223ENST00000601341 CHUKO15111 745 aa12.02□□□□□ -0.48
VRK3-223ENST00000601341 RASA4O43374 803 aa12.02□□□□□ -0.48
VRK3-223ENST00000601341 PECAM1P16284 738 aaPredicted RBP12.02□□□□□ -0.48
VRK3-223ENST00000601341 IL4RP24394 825 aa12.02□□□□□ -0.48
VRK3-223ENST00000601341 STIP1P31948 543 aaKnown RBP12.02□□□□□ -0.48
VRK3-223ENST00000601341 STX2P32856 288 aa12.02□□□□□ -0.48
VRK3-223ENST00000601341 PHBP35232 272 aa12.02□□□□□ -0.48
VRK3-223ENST00000601341 SKIV2L2P42285 1042 aaKnown RBP12.02□□□□□ -0.48
VRK3-223ENST00000601341 TBX4P57082 545 aa12.02□□□□□ -0.48
VRK3-223ENST00000601341 MMRN1Q13201 1228 aa12.02□□□□□ -0.48
VRK3-223ENST00000601341 RIPK1Q13546 671 aa12.02□□□□□ -0.48
VRK3-223ENST00000601341 TRIP4Q15650 581 aaPredicted RBP12.02□□□□□ -0.48
VRK3-223ENST00000601341 ELMSAN1Q6PJG2 1045 aa12.02□□□□□ -0.48
VRK3-223ENST00000601341 MIB1Q86YT6 1006 aa12.02□□□□□ -0.48
VRK3-223ENST00000601341 PYROXD2Q8N2H3 581 aa12.02□□□□□ -0.48
VRK3-223ENST00000601341 PRCCQ92733 491 aaPredicted RBP12.02□□□□□ -0.48
VRK3-223ENST00000601341 FAF2Q96CS3 445 aa12.02□□□□□ -0.48
VRK3-223ENST00000601341 SLC39A13Q96H72 371 aa12.02□□□□□ -0.48
VRK3-223ENST00000601341 HAPLN3Q96S86 360 aa12.02□□□□□ -0.48
VRK3-223ENST00000601341 KCTD15Q96SI1 283 aaPredicted RBP12.02□□□□□ -0.48
VRK3-223ENST00000601341 FRMD8Q9BZ67 464 aaPredicted RBP12.02□□□□□ -0.48
VRK3-223ENST00000601341 SAYSD1Q9NPB0 183 aa12.02□□□□□ -0.48
VRK3-223ENST00000601341 MAN1C1Q9NR34 630 aa12.02□□□□□ -0.48
VRK3-223ENST00000601341 TMPRSS4Q9NRS4 437 aa12.02□□□□□ -0.48
VRK3-223ENST00000601341 DNMT3LQ9UJW3 386 aa12.02□□□□□ -0.48
VRK3-223ENST00000601341 PLXNA3P51805 1871 aa12.02□□□□□ -0.49
VRK3-223ENST00000601341 KCNU1A8MYU2 1149 aa12.02□□□□□ -0.49
VRK3-223ENST00000601341 TCP11X1B4DZS4 312 aa12.02□□□□□ -0.49
VRK3-223ENST00000601341 H3BRJ5 948 aa12.02□□□□□ -0.49
VRK3-223ENST00000601341 APOC4-APOC2K7ER74 178 aa12.02□□□□□ -0.49
VRK3-223ENST00000601341 APOEP02649 317 aa12.02□□□□□ -0.49
VRK3-223ENST00000601341 APOC2P02655 101 aa12.02□□□□□ -0.49
VRK3-223ENST00000601341 F11P03951 625 aa12.02□□□□□ -0.49
VRK3-223ENST00000601341 VPS41P49754 854 aa12.02□□□□□ -0.49
VRK3-223ENST00000601341 DYNLT1P63172 113 aa12.02□□□□□ -0.49
VRK3-223ENST00000601341 RING1Q06587 406 aa12.02□□□□□ -0.49
VRK3-223ENST00000601341 MTA1Q13330 715 aa12.02□□□□□ -0.49
VRK3-223ENST00000601341 HIF1AQ16665 826 aa12.02□□□□□ -0.49
VRK3-223ENST00000601341 GALNTL6Q49A17 601 aa12.02□□□□□ -0.49
VRK3-223ENST00000601341 CCDC38Q502W7 563 aa12.02□□□□□ -0.49
VRK3-223ENST00000601341 SPDYAQ5MJ70 313 aa12.02□□□□□ -0.49
VRK3-223ENST00000601341 RNF43Q68DV7 783 aa12.02□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 60.5 ms