RNA–Protein interactions for RNA: ENST00000585121.5

SS18-225, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-225ENST00000585121 JAM2P57087 298 aa12.78□□□□□ -0.36
SS18-225ENST00000585121 NOMO3P69849 1222 aa12.78□□□□□ -0.36
SS18-225ENST00000585121 ECT2LQ008S8 904 aa12.78□□□□□ -0.36
SS18-225ENST00000585121 CDR2Q01850 454 aa12.78□□□□□ -0.36
SS18-225ENST00000585121 DEUP1Q05D60 604 aa12.78□□□□□ -0.36
SS18-225ENST00000585121 ZNF177Q13360 481 aaPredicted RBP12.78□□□□□ -0.36
SS18-225ENST00000585121 AUHQ13825 339 aaKnown RBP12.78□□□□□ -0.36
SS18-225ENST00000585121 SLC25A52Q3SY17 297 aa12.78□□□□□ -0.36
SS18-225ENST00000585121 TTC31Q49AM3 519 aaPredicted RBP12.78□□□□□ -0.36
SS18-225ENST00000585121 FSCBQ5H9T9 825 aa12.78□□□□□ -0.36
SS18-225ENST00000585121 PEAR1Q5VY43 1037 aaPredicted RBP12.78□□□□□ -0.36
SS18-225ENST00000585121 FBXL22Q6P050 247 aa12.78□□□□□ -0.36
SS18-225ENST00000585121 SLC23A3Q6PIS1 610 aa12.78□□□□□ -0.36
SS18-225ENST00000585121 SLC41A1Q8IVJ1 513 aa12.78□□□□□ -0.36
SS18-225ENST00000585121 CCAR2Q8N163 923 aaKnown RBP12.78□□□□□ -0.36
SS18-225ENST00000585121 CADM4Q8NFZ8 388 aa12.78□□□□□ -0.36
SS18-225ENST00000585121 NPY6RQ99463 290 aa12.78□□□□□ -0.36
SS18-225ENST00000585121 PRMT1Q99873 361 aaKnown RBP12.78□□□□□ -0.36
SS18-225ENST00000585121 SIK2Q9H0K1 926 aa12.78□□□□□ -0.36
SS18-225ENST00000585121 PRSS16Q9NQE7 514 aa12.78□□□□□ -0.36
SS18-225ENST00000585121 VANGL2Q9ULK5 521 aa12.78□□□□□ -0.36
SS18-225ENST00000585121 ERVW-1Q9UQF0 538 aa12.78□□□□□ -0.36
SS18-225ENST00000585121 PAGE1O75459 146 aa12.77□□□□□ -0.37
SS18-225ENST00000585121 CLDN11O75508 207 aa12.77□□□□□ -0.37
SS18-225ENST00000585121 IGLV3-19P01714 112 aa12.77□□□□□ -0.37
SS18-225ENST00000585121 SYPP08247 313 aa12.77□□□□□ -0.37
SS18-225ENST00000585121 PDGFRAP16234 1089 aa12.77□□□□□ -0.37
SS18-225ENST00000585121 ZNF18P17022 549 aa12.77□□□□□ -0.37
SS18-225ENST00000585121 CXCR3P49682 368 aa12.77□□□□□ -0.37
SS18-225ENST00000585121 HNRNPA1L2Q32P51 320 aaKnown RBP12.77□□□□□ -0.37
SS18-225ENST00000585121 PLEKHG6Q3KR16 790 aa12.77□□□□□ -0.37
SS18-225ENST00000585121 ANO6Q4KMQ2 910 aa12.77□□□□□ -0.37
SS18-225ENST00000585121 FILIP1LQ4L180 1135 aa12.77□□□□□ -0.37
SS18-225ENST00000585121 ZNF776Q68DI1 518 aaPredicted RBP12.77□□□□□ -0.37
SS18-225ENST00000585121 CAVIN1Q6NZI2 390 aaKnown RBP12.77□□□□□ -0.37
SS18-225ENST00000585121 LRRC31Q6UY01 552 aa12.77□□□□□ -0.37
SS18-225ENST00000585121 MMS22LQ6ZRQ5 1243 aa12.77□□□□□ -0.37
SS18-225ENST00000585121 FAM124AQ86V42 546 aa12.77□□□□□ -0.37
SS18-225ENST00000585121 GANCQ8TET4 914 aa12.77□□□□□ -0.37
SS18-225ENST00000585121 PGAP3Q96FM1 320 aaPredicted RBP12.77□□□□□ -0.37
SS18-225ENST00000585121 ERGIC2Q96RQ1 377 aa12.77□□□□□ -0.37
SS18-225ENST00000585121 TKTL2Q9H0I9 626 aa12.77□□□□□ -0.37
SS18-225ENST00000585121 CD93Q9NPY3 652 aa12.77□□□□□ -0.37
SS18-225ENST00000585121 TMEM63CQ9P1W3 806 aa12.77□□□□□ -0.37
SS18-225ENST00000585121 NOCTQ9UK39 431 aaKnown RBP12.77□□□□□ -0.37
SS18-225ENST00000585121 INTS6Q9UL03 887 aaKnown RBP12.77□□□□□ -0.37
SS18-225ENST00000585121 SCML1Q9UN30 329 aa12.77□□□□□ -0.37
SS18-225ENST00000585121 NCKAP1Q9Y2A7 1128 aa12.77□□□□□ -0.37
SS18-225ENST00000585121 HS3ST4Q9Y661 456 aa12.77□□□□□ -0.37
SS18-225ENST00000585121 NCOR2Q9Y618 2525 aa12.76□□□□□ -0.37
SS18-225ENST00000585121 EDDM13A0A1B0GTR0 161 aa12.76□□□□□ -0.37
SS18-225ENST00000585121 FAM170AA1A519 330 aa12.76□□□□□ -0.37
SS18-225ENST00000585121 TARSL2A2RTX5 802 aaKnown RBP12.76□□□□□ -0.37
SS18-225ENST00000585121 ENGP17813 658 aa12.76□□□□□ -0.37
SS18-225ENST00000585121 MAPK8P45983 427 aa12.76□□□□□ -0.37
SS18-225ENST00000585121 RPS14P62263 151 aaKnown RBP12.76□□□□□ -0.37
SS18-225ENST00000585121 FMO1Q01740 532 aa12.76□□□□□ -0.37
SS18-225ENST00000585121 NCAPHQ15003 741 aa12.76□□□□□ -0.37
SS18-225ENST00000585121 UAP1L1Q3KQV9 507 aa12.76□□□□□ -0.37
SS18-225ENST00000585121 ARCQ7LC44 396 aa12.76□□□□□ -0.37
SS18-225ENST00000585121 CIR1Q86X95 450 aaPredicted RBP12.76□□□□□ -0.37
SS18-225ENST00000585121 HDDC3Q8N4P3 179 aa12.76□□□□□ -0.37
SS18-225ENST00000585121 SLC20A1Q8WUM9 679 aa12.76□□□□□ -0.37
SS18-225ENST00000585121 NT5C3BQ969T7 300 aa12.76□□□□□ -0.37
SS18-225ENST00000585121 TBCBQ99426 244 aa12.76□□□□□ -0.37
SS18-225ENST00000585121 BPIFA3Q9BQP9 254 aa12.76□□□□□ -0.37
SS18-225ENST00000585121 ANP32EQ9BTT0 268 aa12.76□□□□□ -0.37
SS18-225ENST00000585121 BTBD1Q9H0C5 482 aa12.76□□□□□ -0.37
SS18-225ENST00000585121 PCED1AQ9H1Q7 454 aa12.76□□□□□ -0.37
SS18-225ENST00000585121 PIGVQ9NUD9 493 aa12.76□□□□□ -0.37
SS18-225ENST00000585121 SEPT11Q9NVA2 429 aaKnown RBP12.76□□□□□ -0.37
SS18-225ENST00000585121 ARHGEF38Q9NXL2 777 aa12.76□□□□□ -0.37
SS18-225ENST00000585121 SLC25A13Q9UJS0 675 aa12.76□□□□□ -0.37
SS18-225ENST00000585121 CNOT1A5YKK6 2376 aaKnown RBP12.76□□□□□ -0.37
SS18-225ENST00000585121 TM4SF5O14894 197 aa12.75□□□□□ -0.37
SS18-225ENST00000585121 EPHB6O15197 1021 aa12.75□□□□□ -0.37
SS18-225ENST00000585121 SIN3BO75182 1162 aa12.75□□□□□ -0.37
SS18-225ENST00000585121 ADCY5O95622 1261 aa12.75□□□□□ -0.37
SS18-225ENST00000585121 CYP1A1P04798 512 aaPredicted RBP12.75□□□□□ -0.37
SS18-225ENST00000585121 RDXP35241 583 aaKnown RBP12.75□□□□□ -0.37
SS18-225ENST00000585121 CTSOP43234 321 aaPredicted RBP12.75□□□□□ -0.37
SS18-225ENST00000585121 NSFP46459 744 aaKnown RBP12.75□□□□□ -0.37
SS18-225ENST00000585121 PLK1P53350 603 aa12.75□□□□□ -0.37
SS18-225ENST00000585121 CDH4P55283 916 aa12.75□□□□□ -0.37
SS18-225ENST00000585121 ARID5BQ14865 1188 aa12.75□□□□□ -0.37
SS18-225ENST00000585121 SKOR2Q2VWA4 1001 aaPredicted RBP12.75□□□□□ -0.37
SS18-225ENST00000585121 C2CD6Q53TS8 623 aa12.75□□□□□ -0.37
SS18-225ENST00000585121 DCAF12L1Q5VU92 463 aa12.75□□□□□ -0.37
SS18-225ENST00000585121 DHX40Q8IX18 779 aaKnown RBP12.75□□□□□ -0.37
SS18-225ENST00000585121 APCDD1Q8J025 514 aa12.75□□□□□ -0.37
SS18-225ENST00000585121 IGSF8Q969P0 613 aa12.75□□□□□ -0.37
SS18-225ENST00000585121 MRGPRX3Q96LB0 322 aa12.75□□□□□ -0.37
SS18-225ENST00000585121 GTPBP2Q9BX10 602 aaKnown RBP12.75□□□□□ -0.37
SS18-225ENST00000585121 MIR1-1HGQ9H1L0 117 aa12.75□□□□□ -0.37
SS18-225ENST00000585121 RSPH9Q9H1X1 276 aaPredicted RBP12.75□□□□□ -0.37
SS18-225ENST00000585121 SGK2Q9HBY8 427 aa12.75□□□□□ -0.37
SS18-225ENST00000585121 PLXND1Q9Y4D7 1925 aa12.74□□□□□ -0.37
SS18-225ENST00000585121 A0A1B0GTW7 788 aa12.74□□□□□ -0.37
SS18-225ENST00000585121 METTL12A8MUP2 240 aa12.74□□□□□ -0.37
SS18-225ENST00000585121 TTC34A8MYJ7 566 aa12.74□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms