RNA–Protein interactions for RNA: ENST00000580003.1

SS18-214, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 609 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-214ENST00000580003 PIGSQ96S52 555 aa7.05□□□□□ -1.28
SS18-214ENST00000580003 PDE11AQ9HCR9 933 aa7.05□□□□□ -1.28
SS18-214ENST00000580003 SEPSECSQ9HD40 501 aaKnown RBP7.05□□□□□ -1.28
SS18-214ENST00000580003 TMLHEQ9NVH6 421 aa7.05□□□□□ -1.28
SS18-214ENST00000580003 MCIDASD6RGH6 385 aa7.04□□□□□ -1.28
SS18-214ENST00000580003 RHODO00212 210 aa7.04□□□□□ -1.28
SS18-214ENST00000580003 TLX3O43711 291 aaPredicted RBP7.04□□□□□ -1.28
SS18-214ENST00000580003 TULP3O75386 442 aa7.04□□□□□ -1.28
SS18-214ENST00000580003 TRAPPC10P48553 1259 aa7.04□□□□□ -1.28
SS18-214ENST00000580003 ADPRHP54922 357 aa7.04□□□□□ -1.28
SS18-214ENST00000580003 GALNT3Q14435 633 aa7.04□□□□□ -1.28
SS18-214ENST00000580003 KIAA1755Q5JYT7 1200 aa7.04□□□□□ -1.28
SS18-214ENST00000580003 DGAT2L7PQ6IED9 249 aa7.04□□□□□ -1.28
SS18-214ENST00000580003 PIM3Q86V86 326 aa7.04□□□□□ -1.28
SS18-214ENST00000580003 MMP21Q8N119 569 aa7.04□□□□□ -1.28
SS18-214ENST00000580003 MYCT1Q8N699 235 aa7.04□□□□□ -1.28
SS18-214ENST00000580003 ENDOVQ8N8Q3 282 aaKnown RBP7.04□□□□□ -1.28
SS18-214ENST00000580003 ZNF548Q8NEK5 533 aaPredicted RBP7.04□□□□□ -1.28
SS18-214ENST00000580003 CLMNQ96JQ2 1002 aa7.04□□□□□ -1.28
SS18-214ENST00000580003 DDX23Q9BUQ8 820 aaKnown RBP7.04□□□□□ -1.28
SS18-214ENST00000580003 TAF1DQ9H5J8 278 aaPredicted RBP7.04□□□□□ -1.28
SS18-214ENST00000580003 AAMDCQ9H7C9 122 aa7.04□□□□□ -1.28
SS18-214ENST00000580003 THSD1Q9NS62 852 aa7.04□□□□□ -1.28
SS18-214ENST00000580003 DECR2Q9NUI1 292 aa7.04□□□□□ -1.28
SS18-214ENST00000580003 MSRB1Q9NZV6 116 aa7.04□□□□□ -1.28
SS18-214ENST00000580003 LAMP3Q9UQV4 416 aa7.04□□□□□ -1.28
SS18-214ENST00000580003 LZTS1Q9Y250 596 aa7.04□□□□□ -1.28
SS18-214ENST00000580003 H0Y3Z8 333 aa7.03□□□□□ -1.28
SS18-214ENST00000580003 MSI1O43347 362 aaKnown RBP7.03□□□□□ -1.28
SS18-214ENST00000580003 HNRNPRO43390 633 aaKnown RBP7.03□□□□□ -1.28
SS18-214ENST00000580003 ZC3H11AO75152 810 aaKnown RBP eCLIP7.03□□□□□ -1.28
SS18-214ENST00000580003 HEXIM1O94992 359 aaKnown RBP7.03□□□□□ -1.28
SS18-214ENST00000580003 CCT4P50991 539 aaKnown RBP7.03□□□□□ -1.28
SS18-214ENST00000580003 PRKG1Q13976 671 aa7.03□□□□□ -1.28
SS18-214ENST00000580003 TUBB8Q3ZCM7 444 aa7.03□□□□□ -1.28
SS18-214ENST00000580003 MANEAQ5SRI9 462 aa7.03□□□□□ -1.28
SS18-214ENST00000580003 B4GALNT4Q76KP1 1039 aa7.03□□□□□ -1.28
SS18-214ENST00000580003 MDGA2Q7Z553 956 aa7.03□□□□□ -1.28
SS18-214ENST00000580003 DDIASQ8IXT1 998 aa7.03□□□□□ -1.28
SS18-214ENST00000580003 EXD3Q8N9H8 876 aa7.03□□□□□ -1.28
SS18-214ENST00000580003 SLC2A12Q8TD20 617 aa7.03□□□□□ -1.28
SS18-214ENST00000580003 TRAPPC12Q8WVT3 735 aa7.03□□□□□ -1.28
SS18-214ENST00000580003 CENPIQ92674 756 aaPredicted RBP7.03□□□□□ -1.28
SS18-214ENST00000580003 NPAS1Q99742 590 aa7.03□□□□□ -1.28
SS18-214ENST00000580003 ARPC5LQ9BPX5 153 aa7.03□□□□□ -1.28
SS18-214ENST00000580003 TXNRD2Q9NNW7 524 aa7.03□□□□□ -1.28
SS18-214ENST00000580003 SEMA4BQ9NPR2 832 aaPredicted RBP7.03□□□□□ -1.28
SS18-214ENST00000580003 COG5Q9UP83 839 aa7.03□□□□□ -1.28
SS18-214ENST00000580003 MYMKA6NI61 221 aa7.02□□□□□ -1.29
SS18-214ENST00000580003 STAT1P42224 750 aa7.02□□□□□ -1.29
SS18-214ENST00000580003 ALDH7A1P49419 539 aaKnown RBP7.02□□□□□ -1.29
SS18-214ENST00000580003 SMTNL2Q2TAL5 461 aa7.02□□□□□ -1.29
SS18-214ENST00000580003 ARL13AQ5H913 290 aaPredicted RBP7.02□□□□□ -1.29
SS18-214ENST00000580003 TTC39AQ5SRH9 613 aa7.02□□□□□ -1.29
SS18-214ENST00000580003 C6orf10Q5SRN2 563 aa7.02□□□□□ -1.29
SS18-214ENST00000580003 FAM83BQ5T0W9 1011 aa7.02□□□□□ -1.29
SS18-214ENST00000580003 IRF2BP2Q7Z5L9 587 aa7.02□□□□□ -1.29
SS18-214ENST00000580003 ANKS1BQ7Z6G8 1248 aa7.02□□□□□ -1.29
SS18-214ENST00000580003 TMEM200AQ86VY9 491 aa7.02□□□□□ -1.29
SS18-214ENST00000580003 KLBQ86Z14 1044 aa7.02□□□□□ -1.29
SS18-214ENST00000580003 OR6Y1Q8NGX8 325 aa7.02□□□□□ -1.29
SS18-214ENST00000580003 GOLGA1Q92805 767 aa7.02□□□□□ -1.29
SS18-214ENST00000580003 SAYSD1Q9NPB0 183 aa7.02□□□□□ -1.29
SS18-214ENST00000580003 SLC25A13Q9UJS0 675 aa7.02□□□□□ -1.29
SS18-214ENST00000580003 CXorf65A6NEN9 183 aa7.01□□□□□ -1.29
SS18-214ENST00000580003 ZNF814B7Z6K7 855 aa7.01□□□□□ -1.29
SS18-214ENST00000580003 E7EVH7 732 aa7.01□□□□□ -1.29
SS18-214ENST00000580003 GRM8O00222 908 aa7.01□□□□□ -1.29
SS18-214ENST00000580003 IPO5O00410 1097 aaKnown RBP7.01□□□□□ -1.29
SS18-214ENST00000580003 SYF2O95926 243 aaKnown RBP7.01□□□□□ -1.29
SS18-214ENST00000580003 WNT1P04628 370 aa7.01□□□□□ -1.29
SS18-214ENST00000580003 SCP2P22307 547 aa7.01□□□□□ -1.29
SS18-214ENST00000580003 CST5P28325 142 aaPredicted RBP7.01□□□□□ -1.29
SS18-214ENST00000580003 OAZ1P54368 228 aa7.01□□□□□ -1.29
SS18-214ENST00000580003 GAD2Q05329 585 aa7.01□□□□□ -1.29
SS18-214ENST00000580003 INPP5JQ15735 1006 aaPredicted RBP7.01□□□□□ -1.29
SS18-214ENST00000580003 ZNF260Q3ZCT1 412 aa7.01□□□□□ -1.29
SS18-214ENST00000580003 JMJD6Q6NYC1 403 aaPredicted RBP7.01□□□□□ -1.29
SS18-214ENST00000580003 KIAA1324Q6UXG2 1013 aaKnown RBP7.01□□□□□ -1.29
SS18-214ENST00000580003 SYNE3Q6ZMZ3 975 aa7.01□□□□□ -1.29
SS18-214ENST00000580003 COLCA1Q6ZS62 124 aa7.01□□□□□ -1.29
SS18-214ENST00000580003 GALNT15Q8N3T1 639 aa7.01□□□□□ -1.29
SS18-214ENST00000580003 CCT6BQ92526 530 aa7.01□□□□□ -1.29
SS18-214ENST00000580003 NLRP4Q96MN2 994 aa7.01□□□□□ -1.29
SS18-214ENST00000580003 WDR83Q9BRX9 315 aaKnown RBP7.01□□□□□ -1.29
SS18-214ENST00000580003 ABHD16BQ9H3Z7 469 aa7.01□□□□□ -1.29
SS18-214ENST00000580003 ANAPC4Q9UJX5 808 aa7.01□□□□□ -1.29
SS18-214ENST00000580003 KCND3Q9UK17 655 aa7.01□□□□□ -1.29
SS18-214ENST00000580003 FBXO4Q9UKT5 387 aa7.01□□□□□ -1.29
SS18-214ENST00000580003 DTX4Q9Y2E6 619 aa7.01□□□□□ -1.29
SS18-214ENST00000580003 IGLV5-39A0A0G2JS06 123 aa7□□□□□ -1.29
SS18-214ENST00000580003 KCNJ18B7U540 433 aa7□□□□□ -1.29
SS18-214ENST00000580003 TCEA3O75764 348 aa7□□□□□ -1.29
SS18-214ENST00000580003 KRT38O76015 456 aa7□□□□□ -1.29
SS18-214ENST00000580003 NDUFB8O95169 186 aa7□□□□□ -1.29
SS18-214ENST00000580003 LCKP06239 509 aa7□□□□□ -1.29
SS18-214ENST00000580003 PSG1P11464 419 aa7□□□□□ -1.29
SS18-214ENST00000580003 HOXB9P17482 250 aaPredicted RBP7□□□□□ -1.29
SS18-214ENST00000580003 CHRNA5P30532 468 aa7□□□□□ -1.29
SS18-214ENST00000580003 CDK18Q07002 472 aa7□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 44.2 ms