RNA–Protein interactions for RNA: ENST00000576019.5

VPS53-219, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 613 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-219ENST00000576019 PTTG1IPP53801 180 aa6.2□□□□□ -1.42
VPS53-219ENST00000576019 SF3A3Q12874 501 aaKnown RBP eCLIP6.2□□□□□ -1.42
VPS53-219ENST00000576019 BNIP3Q12983 259 aa6.2□□□□□ -1.42
VPS53-219ENST00000576019 DUSP8Q13202 625 aa6.2□□□□□ -1.42
VPS53-219ENST00000576019 ADAM15Q13444 863 aa6.2□□□□□ -1.42
VPS53-219ENST00000576019 PRICKLE4Q2TBC4 344 aa6.2□□□□□ -1.42
VPS53-219ENST00000576019 PLEKHN1Q494U1 663 aaPredicted RBP6.2□□□□□ -1.42
VPS53-219ENST00000576019 SOWAHCQ53LP3 525 aaPredicted RBP6.2□□□□□ -1.42
VPS53-219ENST00000576019 BMP2KLQ5H9B9 411 aa6.2□□□□□ -1.42
VPS53-219ENST00000576019 MFSD14BQ5SR56 506 aa6.2□□□□□ -1.42
VPS53-219ENST00000576019 MANEALQ5VSG8 457 aa6.2□□□□□ -1.42
VPS53-219ENST00000576019 KRT40Q6A162 431 aa6.2□□□□□ -1.42
VPS53-219ENST00000576019 ABLIM2Q6H8Q1 611 aa6.2□□□□□ -1.42
VPS53-219ENST00000576019 ZNF529Q6P280 563 aa6.2□□□□□ -1.42
VPS53-219ENST00000576019 PLBD1Q6P4A8 553 aa6.2□□□□□ -1.42
VPS53-219ENST00000576019 SEM1Q6ZVN7 128 aa6.2□□□□□ -1.42
VPS53-219ENST00000576019 RTL10Q7L3V2 364 aa6.2□□□□□ -1.42
VPS53-219ENST00000576019 WFDC3Q8IUB2 231 aa6.2□□□□□ -1.42
VPS53-219ENST00000576019 CEP57L1Q8IYX8 460 aa6.2□□□□□ -1.42
VPS53-219ENST00000576019 AOPEPQ8N6M6 819 aa6.2□□□□□ -1.42
VPS53-219ENST00000576019 TMIEQ8NEW7 156 aa6.2□□□□□ -1.42
VPS53-219ENST00000576019 TOR1AIP2Q8NFQ8 470 aa6.2□□□□□ -1.42
VPS53-219ENST00000576019 NFKBIDQ8NI38 313 aa6.2□□□□□ -1.42
VPS53-219ENST00000576019 WDR60Q8WVS4 1066 aa6.2□□□□□ -1.42
VPS53-219ENST00000576019 TBC1D31Q96DN5 1066 aa6.2□□□□□ -1.42
VPS53-219ENST00000576019 KTI12Q96EK9 354 aaPredicted RBP6.2□□□□□ -1.42
VPS53-219ENST00000576019 NOX5Q96PH1 765 aa6.2□□□□□ -1.42
VPS53-219ENST00000576019 NDC1Q9BTX1 674 aa6.2□□□□□ -1.42
VPS53-219ENST00000576019 MRI1Q9BV20 369 aa6.2□□□□□ -1.42
VPS53-219ENST00000576019 MECRQ9BV79 373 aa6.2□□□□□ -1.42
VPS53-219ENST00000576019 TTYH3Q9C0H2 523 aa6.2□□□□□ -1.42
VPS53-219ENST00000576019 DEFB129Q9H1M3 183 aa6.2□□□□□ -1.42
VPS53-219ENST00000576019 UBE2ZQ9H832 354 aaPredicted RBP6.2□□□□□ -1.42
VPS53-219ENST00000576019 PLEKHA2Q9HB19 425 aa6.2□□□□□ -1.42
VPS53-219ENST00000576019 ERVK-5Q9HDB9 667 aa6.2□□□□□ -1.42
VPS53-219ENST00000576019 PRDM7Q9NQW5 492 aa6.2□□□□□ -1.42
VPS53-219ENST00000576019 ZSCAN32Q9NX65 697 aa6.2□□□□□ -1.42
VPS53-219ENST00000576019 ANKFY1Q9P2R3 1169 aa6.2□□□□□ -1.42
VPS53-219ENST00000576019 SEL1LQ9UBV2 794 aa6.2□□□□□ -1.42
VPS53-219ENST00000576019 DOCK3Q8IZD9 2030 aa6.2□□□□□ -1.42
VPS53-219ENST00000576019 CEMIPQ8WUJ3 1361 aa6.19□□□□□ -1.42
VPS53-219ENST00000576019 OTOGLQ3ZCN5 2332 aa6.19□□□□□ -1.42
VPS53-219ENST00000576019 DSPP15924 2871 aaKnown RBP6.19□□□□□ -1.42
VPS53-219ENST00000576019 OR2W5A6NFC9 320 aa6.19□□□□□ -1.42
VPS53-219ENST00000576019 C19orf81C9J6K1 198 aa6.19□□□□□ -1.42
VPS53-219ENST00000576019 ZSCAN9O15535 394 aaPredicted RBP6.19□□□□□ -1.42
VPS53-219ENST00000576019 TBCAO75347 108 aaKnown RBP6.19□□□□□ -1.42
VPS53-219ENST00000576019 VPS4BO75351 444 aa6.19□□□□□ -1.42
VPS53-219ENST00000576019 BBOX1O75936 387 aa6.19□□□□□ -1.42
VPS53-219ENST00000576019 HAUS5O94927 633 aa6.19□□□□□ -1.42
VPS53-219ENST00000576019 C8BP07358 591 aa6.19□□□□□ -1.42
VPS53-219ENST00000576019 ATP6V1B1P15313 513 aa6.19□□□□□ -1.42
VPS53-219ENST00000576019 ATP6V1E1P36543 226 aa6.19□□□□□ -1.42
VPS53-219ENST00000576019 CASRP41180 1078 aa6.19□□□□□ -1.42
VPS53-219ENST00000576019 EIF2DP41214 584 aaKnown RBP6.19□□□□□ -1.42
VPS53-219ENST00000576019 RARSP54136 660 aaKnown RBP6.19□□□□□ -1.42
VPS53-219ENST00000576019 WNT3P56703 355 aa6.19□□□□□ -1.42
VPS53-219ENST00000576019 PSMC6P62333 389 aa6.19□□□□□ -1.42
VPS53-219ENST00000576019 KRT17Q04695 432 aa6.19□□□□□ -1.42
VPS53-219ENST00000576019 FPGSQ05932 587 aa6.19□□□□□ -1.42
VPS53-219ENST00000576019 PRPF4BQ13523 1007 aaKnown RBP6.19□□□□□ -1.42
VPS53-219ENST00000576019 RAB3GAP1Q15042 981 aa6.19□□□□□ -1.42
VPS53-219ENST00000576019 ZNF750Q32MQ0 723 aa6.19□□□□□ -1.42
VPS53-219ENST00000576019 LRRC24Q50LG9 513 aa6.19□□□□□ -1.42
VPS53-219ENST00000576019 UTP14CQ5TAP6 766 aaKnown RBP6.19□□□□□ -1.42
VPS53-219ENST00000576019 FAM160B1Q5W0V3 765 aa6.19□□□□□ -1.42
VPS53-219ENST00000576019 ZNF530Q6P9A1 599 aaPredicted RBP6.19□□□□□ -1.42
VPS53-219ENST00000576019 IL27RAQ6UWB1 636 aa6.19□□□□□ -1.42
VPS53-219ENST00000576019 PRR23CQ6ZRP0 262 aa6.19□□□□□ -1.42
VPS53-219ENST00000576019 STK32CQ86UX6 486 aa6.19□□□□□ -1.42
VPS53-219ENST00000576019 ZNF280BQ86YH2 543 aa6.19□□□□□ -1.42
VPS53-219ENST00000576019 RHOT2Q8IXI1 618 aa6.19□□□□□ -1.42
VPS53-219ENST00000576019 FAM71DQ8N9W8 422 aa6.19□□□□□ -1.42
VPS53-219ENST00000576019 GOT1L1Q8NHS2 421 aaPredicted RBP6.19□□□□□ -1.42
VPS53-219ENST00000576019 ETNPPLQ8TBG4 499 aa6.19□□□□□ -1.42
VPS53-219ENST00000576019 SPATA18Q8TC71 538 aa6.19□□□□□ -1.42
VPS53-219ENST00000576019 TP53INP1Q96A56 240 aa6.19□□□□□ -1.42
VPS53-219ENST00000576019 TMEM209Q96SK2 561 aa6.19□□□□□ -1.42
VPS53-219ENST00000576019 GPR20Q99678 358 aa6.19□□□□□ -1.42
VPS53-219ENST00000576019 MESP1Q9BRJ9 268 aa6.19□□□□□ -1.42
VPS53-219ENST00000576019 NYXQ9GZU5 481 aa6.19□□□□□ -1.42
VPS53-219ENST00000576019 MUC13Q9H3R2 512 aa6.19□□□□□ -1.42
VPS53-219ENST00000576019 VEZTQ9HBM0 779 aa6.19□□□□□ -1.42
VPS53-219ENST00000576019 XPNPEP3Q9NQH7 507 aa6.19□□□□□ -1.42
VPS53-219ENST00000576019 FBXO34Q9NWN3 711 aa6.19□□□□□ -1.42
VPS53-219ENST00000576019 DNMT3BQ9UBC3 853 aaKnown RBP6.19□□□□□ -1.42
VPS53-219ENST00000576019 MTRRQ9UBK8 725 aa6.19□□□□□ -1.42
VPS53-219ENST00000576019 HESX1Q9UBX0 185 aa6.19□□□□□ -1.42
VPS53-219ENST00000576019 VAV3Q9UKW4 847 aa6.19□□□□□ -1.42
VPS53-219ENST00000576019 CORO1CQ9ULV4 474 aaPredicted RBP6.19□□□□□ -1.42
VPS53-219ENST00000576019 RBM8AQ9Y5S9 174 aaKnown RBP6.19□□□□□ -1.42
VPS53-219ENST00000576019 CDY1Q9Y6F8 540 aa6.19□□□□□ -1.42
VPS53-219ENST00000576019 ITPR1Q14643 2758 aa6.19□□□□□ -1.42
VPS53-219ENST00000576019 IBTKQ9P2D0 1353 aaPredicted RBP6.18□□□□□ -1.42
VPS53-219ENST00000576019 PIEZO2Q9H5I5 2752 aa6.18□□□□□ -1.42
VPS53-219ENST00000576019 IGSF10Q6WRI0 2623 aa6.18□□□□□ -1.42
VPS53-219ENST00000576019 SPTA1P02549 2419 aa6.18□□□□□ -1.42
VPS53-219ENST00000576019 NPIPB15A6NHN6 443 aaPredicted RBP6.18□□□□□ -1.42
VPS53-219ENST00000576019 RFXAPO00287 272 aa6.18□□□□□ -1.42
VPS53-219ENST00000576019 SH2B2O14492 632 aaPredicted RBP6.18□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 51.8 ms