RNA–Protein interactions for RNA: ENST00000574029.5

VPS53-216, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4 BASIC

Gene VPS53, Length 585 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-216ENST00000574029 EBF2Q9HAK2 575 aa21.81■■□□□ 1.08
VPS53-216ENST00000574029 ST7Q9NRC1 585 aa21.81■■□□□ 1.08
VPS53-216ENST00000574029 XPO7Q9UIA9 1087 aaKnown RBP21.81■■□□□ 1.08
VPS53-216ENST00000574029 FZD4Q9ULV1 537 aa21.81■■□□□ 1.08
VPS53-216ENST00000574029 ZFYVE26Q68DK2 2539 aa21.8■■□□□ 1.08
VPS53-216ENST00000574029 A0A1B0GTQ1 180 aa21.8■■□□□ 1.08
VPS53-216ENST00000574029 EDDM13A0A1B0GTR0 161 aa21.8■■□□□ 1.08
VPS53-216ENST00000574029 A0A1W2PP55 124 aa21.8■■□□□ 1.08
VPS53-216ENST00000574029 FAM47DPA6NHR8 397 aa21.8■■□□□ 1.08
VPS53-216ENST00000574029 TTC34A8MYJ7 566 aa21.8■■□□□ 1.08
VPS53-216ENST00000574029 MOCS3O95396 460 aa21.8■■□□□ 1.08
VPS53-216ENST00000574029 MOCS2O96007 188 aaPredicted RBP21.8■■□□□ 1.08
VPS53-216ENST00000574029 C21orf59P57076 290 aa21.8■■□□□ 1.08
VPS53-216ENST00000574029 MARCH9Q86YJ5 346 aa21.8■■□□□ 1.08
VPS53-216ENST00000574029 MMAAQ8IVH4 418 aaKnown RBP21.8■■□□□ 1.08
VPS53-216ENST00000574029 STK32AQ8WU08 396 aa21.8■■□□□ 1.08
VPS53-216ENST00000574029 FAM149B1Q96BN6 582 aa21.8■■□□□ 1.08
VPS53-216ENST00000574029 FAM129BQ96TA1 746 aa21.8■■□□□ 1.08
VPS53-216ENST00000574029 TRIM62Q9BVG3 475 aa21.8■■□□□ 1.08
VPS53-216ENST00000574029 SLC4A5Q9BY07 1137 aa21.8■■□□□ 1.08
VPS53-216ENST00000574029 LRRC72A6NJI9 287 aa21.79■■□□□ 1.08
VPS53-216ENST00000574029 PPP1R3GB7ZBB8 358 aa21.79■■□□□ 1.08
VPS53-216ENST00000574029 RNASEH2AO75792 299 aaKnown RBP21.79■■□□□ 1.08
VPS53-216ENST00000574029 IGLV3-25P01717 112 aa21.79■■□□□ 1.08
VPS53-216ENST00000574029 WNT1P04628 370 aa21.79■■□□□ 1.08
VPS53-216ENST00000574029 SLC8A1P32418 973 aa21.79■■□□□ 1.08
VPS53-216ENST00000574029 ECT2LQ008S8 904 aa21.79■■□□□ 1.08
VPS53-216ENST00000574029 IL9RQ01113 521 aa21.79■■□□□ 1.08
VPS53-216ENST00000574029 KCNH2Q12809 1159 aa21.79■■□□□ 1.08
VPS53-216ENST00000574029 CAMK2BQ13554 666 aa21.79■■□□□ 1.08
VPS53-216ENST00000574029 KCNJ12Q14500 433 aa21.79■■□□□ 1.08
VPS53-216ENST00000574029 SMAD1Q15797 465 aaKnown RBP21.79■■□□□ 1.08
VPS53-216ENST00000574029 MEA1Q16626 185 aa21.79■■□□□ 1.08
VPS53-216ENST00000574029 COL28A1Q2UY09 1125 aa21.79■■□□□ 1.08
VPS53-216ENST00000574029 INAVAQ3KP66 663 aa21.79■■□□□ 1.08
VPS53-216ENST00000574029 KLHL10Q6JEL2 608 aa21.79■■□□□ 1.08
VPS53-216ENST00000574029 DENND1BQ6P3S1 775 aa21.79■■□□□ 1.08
VPS53-216ENST00000574029 TRIM59Q8IWR1 403 aa21.79■■□□□ 1.08
VPS53-216ENST00000574029 APCDD1Q8J025 514 aa21.79■■□□□ 1.08
VPS53-216ENST00000574029 LGI2Q8N0V4 545 aa21.79■■□□□ 1.08
VPS53-216ENST00000574029 OR2T34Q8NGX1 318 aa21.79■■□□□ 1.08
VPS53-216ENST00000574029 NELFBQ8WX92 580 aa21.79■■□□□ 1.08
VPS53-216ENST00000574029 OMDQ99983 421 aa21.79■■□□□ 1.08
VPS53-216ENST00000574029 SLCO3A1Q9UIG8 710 aa21.79■■□□□ 1.08
VPS53-216ENST00000574029 RAXQ9Y2V3 346 aa21.79■■□□□ 1.08
VPS53-216ENST00000574029 CABIN1Q9Y6J0 2220 aa21.79■■□□□ 1.08
VPS53-216ENST00000574029 CAPN9O14815 690 aa21.78■■□□□ 1.08
VPS53-216ENST00000574029 APOEP02649 317 aa21.78■■□□□ 1.08
VPS53-216ENST00000574029 TACR2P21452 398 aa21.78■■□□□ 1.08
VPS53-216ENST00000574029 BMP6P22004 513 aa21.78■■□□□ 1.08
VPS53-216ENST00000574029 CCR5P51681 352 aa21.78■■□□□ 1.08
VPS53-216ENST00000574029 MARSP56192 900 aaKnown RBP21.78■■□□□ 1.08
VPS53-216ENST00000574029 EIF4EBP2Q13542 120 aaPredicted RBP21.78■■□□□ 1.08
VPS53-216ENST00000574029 ZC3H12AQ5D1E8 599 aaKnown RBP21.78■■□□□ 1.08
VPS53-216ENST00000574029 RAP1GAP2Q684P5 730 aa21.78■■□□□ 1.08
VPS53-216ENST00000574029 TMEM110Q86TL2 294 aa21.78■■□□□ 1.08
VPS53-216ENST00000574029 PDZD3Q86UT5 571 aa21.78■■□□□ 1.08
VPS53-216ENST00000574029 AADATQ8N5Z0 425 aa21.78■■□□□ 1.08
VPS53-216ENST00000574029 SKA1Q96BD8 255 aa21.78■■□□□ 1.08
VPS53-216ENST00000574029 BTN2A3PQ96KV6 586 aa21.78■■□□□ 1.08
VPS53-216ENST00000574029 ELF4Q99607 663 aaPredicted RBP21.78■■□□□ 1.08
VPS53-216ENST00000574029 FTSJ1Q9UET6 329 aa21.78■■□□□ 1.08
VPS53-216ENST00000574029 CYTH4Q9UIA0 394 aa21.78■■□□□ 1.08
VPS53-216ENST00000574029 DSPP15924 2871 aaKnown RBP21.78■■□□□ 1.08
VPS53-216ENST00000574029 KNL1Q8NG31 2342 aa21.77■■□□□ 1.08
VPS53-216ENST00000574029 BICDL2A1A5D9 508 aa21.77■■□□□ 1.08
VPS53-216ENST00000574029 TRABD2BA6NFA1 517 aa21.77■■□□□ 1.08
VPS53-216ENST00000574029 GNA14O95837 355 aa21.77■■□□□ 1.08
VPS53-216ENST00000574029 KRT5P13647 590 aa21.77■■□□□ 1.08
VPS53-216ENST00000574029 GOT1P17174 413 aa21.77■■□□□ 1.08
VPS53-216ENST00000574029 C5AR1P21730 350 aa21.77■■□□□ 1.08
VPS53-216ENST00000574029 NUCB2P80303 420 aa21.77■■□□□ 1.08
VPS53-216ENST00000574029 SHBQ15464 509 aa21.77■■□□□ 1.08
VPS53-216ENST00000574029 SND1Q7KZF4 910 aaKnown RBP eCLIP21.77■■□□□ 1.08
VPS53-216ENST00000574029 CHSY1Q86X52 802 aa21.77■■□□□ 1.08
VPS53-216ENST00000574029 PTPRN2Q92932 1015 aa21.77■■□□□ 1.08
VPS53-216ENST00000574029 INTS2Q9H0H0 1204 aaKnown RBP21.77■■□□□ 1.08
VPS53-216ENST00000574029 POPDC2Q9HBU9 364 aa21.77■■□□□ 1.08
VPS53-216ENST00000574029 SCUBE2Q9NQ36 999 aa21.77■■□□□ 1.08
VPS53-216ENST00000574029 TJP2Q9UDY2 1190 aa21.77■■□□□ 1.08
VPS53-216ENST00000574029 CEP83Q9Y592 693 aa21.77■■□□□ 1.08
VPS53-216ENST00000574029 ANKRD11Q6UB99 2663 aaPredicted RBP21.76■■□□□ 1.07
VPS53-216ENST00000574029 A0A1W2PR77 199 aa21.76■■□□□ 1.07
VPS53-216ENST00000574029 FAM149AA5PLN7 773 aa21.76■■□□□ 1.07
VPS53-216ENST00000574029 E5RJQ4 531 aa21.76■■□□□ 1.07
VPS53-216ENST00000574029 MED7O43513 233 aa21.76■■□□□ 1.07
VPS53-216ENST00000574029 TRUB2O95900 331 aaKnown RBP21.76■■□□□ 1.07
VPS53-216ENST00000574029 ADH1BP00325 375 aa21.76■■□□□ 1.07
VPS53-216ENST00000574029 AFPP02771 609 aaKnown RBP21.76■■□□□ 1.07
VPS53-216ENST00000574029 CD38P28907 300 aa21.76■■□□□ 1.07
VPS53-216ENST00000574029 PSMD8P48556 350 aa21.76■■□□□ 1.07
VPS53-216ENST00000574029 YWHAZP63104 245 aaKnown RBP21.76■■□□□ 1.07
VPS53-216ENST00000574029 SLC12A1Q13621 1099 aa21.76■■□□□ 1.07
VPS53-216ENST00000574029 ACAP1Q15027 740 aa21.76■■□□□ 1.07
VPS53-216ENST00000574029 PRAMEF14Q5SWL7 426 aa21.76■■□□□ 1.07
VPS53-216ENST00000574029 RNF219Q5W0B1 726 aaPredicted RBP21.76■■□□□ 1.07
VPS53-216ENST00000574029 STK40Q8N2I9 435 aa21.76■■□□□ 1.07
VPS53-216ENST00000574029 ZNF606Q8WXB4 792 aa21.76■■□□□ 1.07
VPS53-216ENST00000574029 RPL10LQ96L21 214 aaKnown RBP21.76■■□□□ 1.07
VPS53-216ENST00000574029 MED15Q96RN5 788 aa21.76■■□□□ 1.07
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms