RNA–Protein interactions for RNA: ENST00000568232.1

CLK3-222, Transcript of CDC like kinase 3, humanhuman

Gene CLK3, Length 958 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-222ENST00000568232 HIST2H2BCQ6DN03 193 aa12.22□□□□□ -0.45
CLK3-222ENST00000568232 RFWD3Q6PCD5 774 aa12.22□□□□□ -0.45
CLK3-222ENST00000568232 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP12.22□□□□□ -0.45
CLK3-222ENST00000568232 PRPF39Q86UA1 669 aaKnown RBP12.22□□□□□ -0.45
CLK3-222ENST00000568232 UNC93AQ86WB7 457 aa12.22□□□□□ -0.45
CLK3-222ENST00000568232 NELFCDQ8IXH7 590 aa12.22□□□□□ -0.45
CLK3-222ENST00000568232 STK40Q8N2I9 435 aa12.22□□□□□ -0.45
CLK3-222ENST00000568232 IFI44Q8TCB0 444 aa12.22□□□□□ -0.45
CLK3-222ENST00000568232 MAPK15Q8TD08 544 aa12.22□□□□□ -0.45
CLK3-222ENST00000568232 ARRDC3Q96B67 414 aa12.22□□□□□ -0.45
CLK3-222ENST00000568232 PLD4Q96BZ4 506 aa12.22□□□□□ -0.45
CLK3-222ENST00000568232 SFMBT1Q9UHJ3 866 aa12.22□□□□□ -0.45
CLK3-222ENST00000568232 INTS6Q9UL03 887 aaKnown RBP12.22□□□□□ -0.45
CLK3-222ENST00000568232 ENTPD2Q9Y5L3 495 aa12.22□□□□□ -0.45
CLK3-222ENST00000568232 GOLGA6L7A0A1B0GV03 622 aa12.21□□□□□ -0.45
CLK3-222ENST00000568232 LRRIQ3A6PVS8 624 aaPredicted RBP12.21□□□□□ -0.45
CLK3-222ENST00000568232 STX6O43752 255 aa12.21□□□□□ -0.45
CLK3-222ENST00000568232 MAGEC1O60732 1142 aa12.21□□□□□ -0.45
CLK3-222ENST00000568232 TBL1XO60907 577 aa12.21□□□□□ -0.45
CLK3-222ENST00000568232 RTN2O75298 545 aa12.21□□□□□ -0.45
CLK3-222ENST00000568232 TNFSF15O95150 251 aa12.21□□□□□ -0.45
CLK3-222ENST00000568232 GP1BAP07359 652 aa12.21□□□□□ -0.45
CLK3-222ENST00000568232 CSKP41240 450 aa12.21□□□□□ -0.45
CLK3-222ENST00000568232 ASPAP45381 313 aa12.21□□□□□ -0.45
CLK3-222ENST00000568232 HARS2P49590 506 aaKnown RBP12.21□□□□□ -0.45
CLK3-222ENST00000568232 ADGRF1Q5T601 910 aa12.21□□□□□ -0.45
CLK3-222ENST00000568232 PPP1R26Q5T8A7 1209 aaPredicted RBP12.21□□□□□ -0.45
CLK3-222ENST00000568232 MMS22LQ6ZRQ5 1243 aa12.21□□□□□ -0.45
CLK3-222ENST00000568232 STXBP4Q6ZWJ1 553 aa12.21□□□□□ -0.45
CLK3-222ENST00000568232 USP53Q70EK8 1073 aa12.21□□□□□ -0.45
CLK3-222ENST00000568232 EPM2AIP1Q7L775 607 aaPredicted RBP12.21□□□□□ -0.45
CLK3-222ENST00000568232 IQCHQ86VS3 1027 aa12.21□□□□□ -0.45
CLK3-222ENST00000568232 CCDC65Q8IXS2 484 aa12.21□□□□□ -0.45
CLK3-222ENST00000568232 ZNF507Q8TCN5 953 aa12.21□□□□□ -0.45
CLK3-222ENST00000568232 TTC17Q96AE7 1141 aa12.21□□□□□ -0.45
CLK3-222ENST00000568232 LMLNQ96KR4 655 aa12.21□□□□□ -0.45
CLK3-222ENST00000568232 MYOCQ99972 504 aa12.21□□□□□ -0.45
CLK3-222ENST00000568232 DUSP16Q9BY84 665 aa12.21□□□□□ -0.45
CLK3-222ENST00000568232 STIM2Q9P246 746 aa12.21□□□□□ -0.45
CLK3-222ENST00000568232 TJP2Q9UDY2 1190 aa12.21□□□□□ -0.45
CLK3-222ENST00000568232 SEPT3Q9UH03 358 aa12.21□□□□□ -0.45
CLK3-222ENST00000568232 CYTH4Q9UIA0 394 aa12.21□□□□□ -0.45
CLK3-222ENST00000568232 SLCO3A1Q9UIG8 710 aa12.21□□□□□ -0.45
CLK3-222ENST00000568232 FBXO2Q9UK22 296 aaPredicted RBP12.21□□□□□ -0.45
CLK3-222ENST00000568232 PAXBP1Q9Y5B6 917 aa12.21□□□□□ -0.45
CLK3-222ENST00000568232 GTF3C3Q9Y5Q9 886 aa12.21□□□□□ -0.45
CLK3-222ENST00000568232 CLIC4Q9Y696 253 aa12.21□□□□□ -0.45
CLK3-222ENST00000568232 LRRK2Q5S007 2527 aa12.2□□□□□ -0.46
CLK3-222ENST00000568232 NEBLO76041 1014 aa12.2□□□□□ -0.46
CLK3-222ENST00000568232 BMP15O95972 392 aa12.2□□□□□ -0.46
CLK3-222ENST00000568232 IL1BP01584 269 aa12.2□□□□□ -0.46
CLK3-222ENST00000568232 THEGLP0DJG4 465 aa12.2□□□□□ -0.46
CLK3-222ENST00000568232 C5AR1P21730 350 aa12.2□□□□□ -0.46
CLK3-222ENST00000568232 GJB2P29033 226 aa12.2□□□□□ -0.46
CLK3-222ENST00000568232 DRD3P35462 400 aa12.2□□□□□ -0.46
CLK3-222ENST00000568232 NUMBP49757 651 aa12.2□□□□□ -0.46
CLK3-222ENST00000568232 DLG4P78352 724 aa12.2□□□□□ -0.46
CLK3-222ENST00000568232 KCNMA1Q12791 1236 aa12.2□□□□□ -0.46
CLK3-222ENST00000568232 OVGP1Q12889 678 aa12.2□□□□□ -0.46
CLK3-222ENST00000568232 TGIF1Q15583 401 aa12.2□□□□□ -0.46
CLK3-222ENST00000568232 IGFBP7Q16270 282 aa12.2□□□□□ -0.46
CLK3-222ENST00000568232 SGSM1Q2NKQ1 1148 aa12.2□□□□□ -0.46
CLK3-222ENST00000568232 CRTC1Q6UUV9 634 aa12.2□□□□□ -0.46
CLK3-222ENST00000568232 PARD3BQ8TEW8 1205 aa12.2□□□□□ -0.46
CLK3-222ENST00000568232 SGF29Q96ES7 293 aa12.2□□□□□ -0.46
CLK3-222ENST00000568232 KLHDC7BQ96G42 594 aa12.2□□□□□ -0.46
CLK3-222ENST00000568232 STOML2Q9UJZ1 356 aa12.2□□□□□ -0.46
CLK3-222ENST00000568232 ATXN7L1Q9ULK2 861 aaPredicted RBP12.2□□□□□ -0.46
CLK3-222ENST00000568232 ERVW-1Q9UQF0 538 aa12.2□□□□□ -0.46
CLK3-222ENST00000568232 PCDHGA8Q9Y5G5 932 aa12.2□□□□□ -0.46
CLK3-222ENST00000568232 TARSL2A2RTX5 802 aaKnown RBP12.19□□□□□ -0.46
CLK3-222ENST00000568232 CPED1A4D0V7 1026 aa12.19□□□□□ -0.46
CLK3-222ENST00000568232 MSI1O43347 362 aaKnown RBP12.19□□□□□ -0.46
CLK3-222ENST00000568232 LZTS3O60299 673 aaPredicted RBP12.19□□□□□ -0.46
CLK3-222ENST00000568232 EXOC3O60645 756 aa12.19□□□□□ -0.46
CLK3-222ENST00000568232 PIAS2O75928 621 aa12.19□□□□□ -0.46
CLK3-222ENST00000568232 GJB6O95452 261 aa12.19□□□□□ -0.46
CLK3-222ENST00000568232 P4HA1P13674 534 aa12.19□□□□□ -0.46
CLK3-222ENST00000568232 VAV1P15498 845 aa12.19□□□□□ -0.46
CLK3-222ENST00000568232 MZF1P28698 734 aaPredicted RBP12.19□□□□□ -0.46
CLK3-222ENST00000568232 SLC6A4P31645 630 aa12.19□□□□□ -0.46
CLK3-222ENST00000568232 STAT6P42226 847 aa12.19□□□□□ -0.46
CLK3-222ENST00000568232 DUSP3P51452 185 aaPredicted RBP12.19□□□□□ -0.46
CLK3-222ENST00000568232 LSM11P83369 360 aaKnown RBP eCLIP12.19□□□□□ -0.46
CLK3-222ENST00000568232 ARID5BQ14865 1188 aa12.19□□□□□ -0.46
CLK3-222ENST00000568232 CDKN3Q16667 212 aa12.19□□□□□ -0.46
CLK3-222ENST00000568232 ZNF542PQ5EBM4 170 aa12.19□□□□□ -0.46
CLK3-222ENST00000568232 FSCBQ5H9T9 825 aa12.19□□□□□ -0.46
CLK3-222ENST00000568232 PIK3R6Q5UE93 754 aa12.19□□□□□ -0.46
CLK3-222ENST00000568232 XKR5Q6UX68 686 aa12.19□□□□□ -0.46
CLK3-222ENST00000568232 CLEC14AQ86T13 490 aa12.19□□□□□ -0.46
CLK3-222ENST00000568232 MFN1Q8IWA4 741 aa12.19□□□□□ -0.46
CLK3-222ENST00000568232 ARHGAP18Q8N392 663 aa12.19□□□□□ -0.46
CLK3-222ENST00000568232 ARL14Q8N4G2 192 aa12.19□□□□□ -0.46
CLK3-222ENST00000568232 EDEM1Q92611 657 aa12.19□□□□□ -0.46
CLK3-222ENST00000568232 KLK6Q92876 244 aa12.19□□□□□ -0.46
CLK3-222ENST00000568232 PTPRN2Q92932 1015 aa12.19□□□□□ -0.46
CLK3-222ENST00000568232 MYEOVQ96EZ4 313 aa12.19□□□□□ -0.46
CLK3-222ENST00000568232 NT5C1AQ9BXI3 368 aa12.19□□□□□ -0.46
CLK3-222ENST00000568232 KLHL11Q9NVR0 708 aa12.19□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms