RNA–Protein interactions for RNA: ENST00000566078.1

CTCF-203, Transcript of CCCTC-binding factor, humanhuman

TSL 2

Gene CTCF, Length 1,627 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-203ENST00000566078 CIR1Q86X95 450 aaPredicted RBP31.44■■■□□ 2.62
CTCF-203ENST00000566078 ITFG1Q8TB96 612 aa31.44■■■□□ 2.62
CTCF-203ENST00000566078 CELF6Q96J87 481 aaKnown RBP31.44■■■□□ 2.62
CTCF-203ENST00000566078 KLC2Q9H0B6 622 aa31.44■■■□□ 2.62
CTCF-203ENST00000566078 TTYH1Q9H313 450 aaPredicted RBP31.44■■■□□ 2.62
CTCF-203ENST00000566078 TMEM248Q9NWD8 314 aa31.44■■■□□ 2.62
CTCF-203ENST00000566078 LMCD1Q9NZU5 365 aa31.44■■■□□ 2.62
CTCF-203ENST00000566078 STOML2Q9UJZ1 356 aa31.44■■■□□ 2.62
CTCF-203ENST00000566078 BCLAF3A2AJT9 711 aaKnown RBP31.43■■■□□ 2.62
CTCF-203ENST00000566078 HACD1B0YJ81 288 aa31.43■■■□□ 2.62
CTCF-203ENST00000566078 PPP1R12AO14974 1030 aaPredicted RBP31.43■■■□□ 2.62
CTCF-203ENST00000566078 IFNB1P01574 187 aa31.43■■■□□ 2.62
CTCF-203ENST00000566078 TUBBP07437 444 aa31.43■■■□□ 2.62
CTCF-203ENST00000566078 TRADDQ15628 312 aa31.43■■■□□ 2.62
CTCF-203ENST00000566078 RABGAP1LQ5R372 815 aa31.43■■■□□ 2.62
CTCF-203ENST00000566078 ANKRD54Q6NXT1 300 aa31.43■■■□□ 2.62
CTCF-203ENST00000566078 FAM71DQ8N9W8 422 aa31.43■■■□□ 2.62
CTCF-203ENST00000566078 GLIS1Q8NBF1 620 aa31.43■■■□□ 2.62
CTCF-203ENST00000566078 TFB1MQ8WVM0 346 aaKnown RBP31.43■■■□□ 2.62
CTCF-203ENST00000566078 PRICKLE1Q96MT3 831 aaPredicted RBP31.43■■■□□ 2.62
CTCF-203ENST00000566078 NDFIP2Q9NV92 336 aa31.43■■■□□ 2.62
CTCF-203ENST00000566078 ZMYM5Q9UJ78 669 aa31.43■■■□□ 2.62
CTCF-203ENST00000566078 CCL26Q9Y258 94 aa31.43■■■□□ 2.62
CTCF-203ENST00000566078 CFAP69A5D8W1 941 aa31.42■■■□□ 2.62
CTCF-203ENST00000566078 TRDMT1O14717 391 aaKnown RBP31.42■■■□□ 2.62
CTCF-203ENST00000566078 ETS1P14921 441 aa31.42■■■□□ 2.62
CTCF-203ENST00000566078 RBL1P28749 1068 aa31.42■■■□□ 2.62
CTCF-203ENST00000566078 VPS41P49754 854 aa31.42■■■□□ 2.62
CTCF-203ENST00000566078 C5orf22Q49AR2 442 aa31.42■■■□□ 2.62
CTCF-203ENST00000566078 DDX42Q86XP3 938 aaKnown RBP eCLIP31.42■■■□□ 2.62
CTCF-203ENST00000566078 LZTR1Q8N653 840 aa31.42■■■□□ 2.62
CTCF-203ENST00000566078 CCDC89Q8N998 374 aa31.42■■■□□ 2.62
CTCF-203ENST00000566078 SEC14L1Q92503 715 aa31.42■■■□□ 2.62
CTCF-203ENST00000566078 LGMNQ99538 433 aa31.42■■■□□ 2.62
CTCF-203ENST00000566078 TMEM265A0A087WTH1 108 aa31.42■■■□□ 2.62
CTCF-203ENST00000566078 KCNN4O15554 427 aa31.42■■■□□ 2.62
CTCF-203ENST00000566078 GALNT2Q10471 571 aa31.42■■■□□ 2.62
CTCF-203ENST00000566078 CFAP52Q8N1V2 620 aa31.42■■■□□ 2.62
CTCF-203ENST00000566078 SH3RF2Q8TEC5 729 aa31.42■■■□□ 2.62
CTCF-203ENST00000566078 IFT81Q8WYA0 676 aa31.42■■■□□ 2.62
CTCF-203ENST00000566078 SNX24Q9Y343 169 aa31.42■■■□□ 2.62
CTCF-203ENST00000566078 ZFP37Q9Y6Q3 630 aaPredicted RBP31.42■■■□□ 2.62
CTCF-203ENST00000566078 ZSCAN5DPP0CG00 497 aa31.41■■■□□ 2.62
CTCF-203ENST00000566078 TNFRSF8P28908 595 aa31.41■■■□□ 2.62
CTCF-203ENST00000566078 PRKD1Q15139 912 aaPredicted RBP31.41■■■□□ 2.62
CTCF-203ENST00000566078 HTR3DQ70Z44 454 aa31.41■■■□□ 2.62
CTCF-203ENST00000566078 GPR149Q86SP6 731 aa31.41■■■□□ 2.62
CTCF-203ENST00000566078 CCNYQ8ND76 341 aa31.41■■■□□ 2.62
CTCF-203ENST00000566078 USP13Q92995 863 aaPredicted RBP31.41■■■□□ 2.62
CTCF-203ENST00000566078 PCDH9Q9HC56 1237 aa31.41■■■□□ 2.62
CTCF-203ENST00000566078 FAM114A2Q9NRY5 505 aa31.41■■■□□ 2.62
CTCF-203ENST00000566078 ZNF510Q9Y2H8 683 aa31.41■■■□□ 2.62
CTCF-203ENST00000566078 NCAM2O15394 837 aa31.4■■■□□ 2.62
CTCF-203ENST00000566078 TSPAN3O60637 253 aa31.4■■■□□ 2.62
CTCF-203ENST00000566078 MX2P20592 715 aa31.4■■■□□ 2.62
CTCF-203ENST00000566078 RPL21P46778 160 aaKnown RBP31.4■■■□□ 2.62
CTCF-203ENST00000566078 AP1B1Q10567 949 aa31.4■■■□□ 2.62
CTCF-203ENST00000566078 GRIN2CQ14957 1233 aa31.4■■■□□ 2.62
CTCF-203ENST00000566078 HEATR6Q6AI08 1181 aaKnown RBP31.4■■■□□ 2.62
CTCF-203ENST00000566078 SYCE2Q6PIF2 218 aa31.4■■■□□ 2.62
CTCF-203ENST00000566078 ARHGAP12Q8IWW6 846 aa31.4■■■□□ 2.62
CTCF-203ENST00000566078 GSPT2Q8IYD1 628 aaKnown RBP31.4■■■□□ 2.62
CTCF-203ENST00000566078 ZSWIM3Q96MP5 696 aa31.4■■■□□ 2.62
CTCF-203ENST00000566078 USP29Q9HBJ7 922 aa31.4■■■□□ 2.62
CTCF-203ENST00000566078 TDP1Q9NUW8 608 aa31.4■■■□□ 2.62
CTCF-203ENST00000566078 DONSONQ9NYP3 566 aa31.4■■■□□ 2.62
CTCF-203ENST00000566078 MYO18AQ92614 2054 aaKnown RBP31.4■■■□□ 2.62
CTCF-203ENST00000566078 DENND4AQ7Z401 1863 aa31.39■■■□□ 2.62
CTCF-203ENST00000566078 DFFAO00273 331 aa31.39■■■□□ 2.62
CTCF-203ENST00000566078 PRAMEF12O95522 483 aa31.39■■■□□ 2.62
CTCF-203ENST00000566078 VAV1P15498 845 aa31.39■■■□□ 2.62
CTCF-203ENST00000566078 STIP1P31948 543 aaKnown RBP31.39■■■□□ 2.62
CTCF-203ENST00000566078 CARSP49589 748 aaKnown RBP31.39■■■□□ 2.62
CTCF-203ENST00000566078 SGSHP51688 502 aa31.39■■■□□ 2.62
CTCF-203ENST00000566078 POTEHQ6S545 545 aa31.39■■■□□ 2.62
CTCF-203ENST00000566078 CCHCR1Q8TD31 782 aa31.39■■■□□ 2.62
CTCF-203ENST00000566078 ZNF212Q9UDV6 495 aa31.39■■■□□ 2.62
CTCF-203ENST00000566078 FSHRP23945 695 aa31.38■■■□□ 2.61
CTCF-203ENST00000566078 GARSP41250 739 aaKnown RBP31.38■■■□□ 2.61
CTCF-203ENST00000566078 NRLP54845 237 aa31.38■■■□□ 2.61
CTCF-203ENST00000566078 RPS24P62847 133 aaKnown RBP31.38■■■□□ 2.61
CTCF-203ENST00000566078 ADAM15Q13444 863 aa31.38■■■□□ 2.61
CTCF-203ENST00000566078 CUL1Q13616 776 aa31.38■■■□□ 2.61
CTCF-203ENST00000566078 CBX2Q14781 532 aaPredicted RBP31.38■■■□□ 2.61
CTCF-203ENST00000566078 CCNI2Q6ZMN8 369 aaPredicted RBP31.38■■■□□ 2.61
CTCF-203ENST00000566078 BBS7Q8IWZ6 715 aa31.38■■■□□ 2.61
CTCF-203ENST00000566078 HDAC11Q96DB2 347 aa31.38■■■□□ 2.61
CTCF-203ENST00000566078 SLC39A8Q9C0K1 460 aa31.38■■■□□ 2.61
CTCF-203ENST00000566078 CDH22Q9UJ99 828 aa31.38■■■□□ 2.61
CTCF-203ENST00000566078 MTCH2Q9Y6C9 303 aa31.38■■■□□ 2.61
CTCF-203ENST00000566078 MYOFQ9NZM1 2061 aa31.38■■■□□ 2.61
CTCF-203ENST00000566078 MYBL2P10244 700 aa31.38■■■□□ 2.61
CTCF-203ENST00000566078 ADCY8P40145 1251 aa31.38■■■□□ 2.61
CTCF-203ENST00000566078 AFMIDQ63HM1 303 aa31.38■■■□□ 2.61
CTCF-203ENST00000566078 FAM217AQ8IXS0 508 aa31.38■■■□□ 2.61
CTCF-203ENST00000566078 UMODL1-AS1Q8N2C9 162 aa31.38■■■□□ 2.61
CTCF-203ENST00000566078 HTR3CQ8WXA8 447 aa31.38■■■□□ 2.61
CTCF-203ENST00000566078 RTP4Q96DX8 246 aa31.38■■■□□ 2.61
CTCF-203ENST00000566078 MAPKAPK2P49137 400 aa31.37■■■□□ 2.61
CTCF-203ENST00000566078 PPIDQ08752 370 aaKnown RBP31.37■■■□□ 2.61
Retrieved 100 of 20,778 RNA–protein pairs in 62.2 ms