RNA–Protein interactions for RNA: ENST00000558518.5

LDLR-208, Transcript of low density lipoprotein receptor, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LDLR, Length 3,617 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-208ENST00000558518 SERPINB9P50453 376 aa11.6□□□□□ -0.55
LDLR-208ENST00000558518 CSE1LP55060 971 aaKnown RBP11.6□□□□□ -0.55
LDLR-208ENST00000558518 EN1Q05925 392 aaPredicted RBP11.6□□□□□ -0.55
LDLR-208ENST00000558518 SPDYE2Q495Y8 402 aa11.6□□□□□ -0.55
LDLR-208ENST00000558518 WDR49Q8IV35 697 aa11.6□□□□□ -0.55
LDLR-208ENST00000558518 LILRA2Q8N149 483 aa11.6□□□□□ -0.55
LDLR-208ENST00000558518 THAP11Q96EK4 314 aa11.6□□□□□ -0.55
LDLR-208ENST00000558518 COQ10BQ9H8M1 238 aa11.6□□□□□ -0.55
LDLR-208ENST00000558518 PLAC1Q9HBJ0 212 aa11.6□□□□□ -0.55
LDLR-208ENST00000558518 GMPR2Q9P2T1 348 aaKnown RBP11.6□□□□□ -0.55
LDLR-208ENST00000558518 H3BNX3 289 aa11.59□□□□□ -0.55
LDLR-208ENST00000558518 PLSCR1O15162 318 aa11.59□□□□□ -0.55
LDLR-208ENST00000558518 CCNT2O60583 730 aaKnown RBP11.59□□□□□ -0.55
LDLR-208ENST00000558518 TIPRLO75663 272 aa11.59□□□□□ -0.55
LDLR-208ENST00000558518 ZNF189O75820 626 aaPredicted RBP11.59□□□□□ -0.55
LDLR-208ENST00000558518 LY6KQ17RY6 165 aa11.59□□□□□ -0.55
LDLR-208ENST00000558518 ANKDD1AQ495B1 522 aa11.59□□□□□ -0.55
LDLR-208ENST00000558518 SLC4A11Q8NBS3 891 aa11.59□□□□□ -0.55
LDLR-208ENST00000558518 ACVR1CQ8NER5 493 aa11.59□□□□□ -0.55
LDLR-208ENST00000558518 PDCD6IPQ8WUM4 868 aaKnown RBP11.59□□□□□ -0.55
LDLR-208ENST00000558518 MFSD3Q96ES6 412 aa11.59□□□□□ -0.55
LDLR-208ENST00000558518 RPL10LQ96L21 214 aaKnown RBP11.59□□□□□ -0.55
LDLR-208ENST00000558518 SORT1Q99523 831 aa11.59□□□□□ -0.55
LDLR-208ENST00000558518 RRN3Q9NYV6 651 aa11.59□□□□□ -0.55
LDLR-208ENST00000558518 ITGA11Q9UKX5 1188 aa11.59□□□□□ -0.55
LDLR-208ENST00000558518 PCDHA11Q9Y5I1 949 aa11.59□□□□□ -0.55
LDLR-208ENST00000558518 ZNF839A8K0R7 811 aa11.59□□□□□ -0.55
LDLR-208ENST00000558518 KCNU1A8MYU2 1149 aa11.59□□□□□ -0.55
LDLR-208ENST00000558518 CASQ2O14958 399 aaPredicted RBP11.59□□□□□ -0.55
LDLR-208ENST00000558518 GPC4O75487 556 aa11.59□□□□□ -0.55
LDLR-208ENST00000558518 ZNF143P52747 638 aaPredicted RBP11.59□□□□□ -0.55
LDLR-208ENST00000558518 CEACAM7Q14002 265 aa11.59□□□□□ -0.55
LDLR-208ENST00000558518 PABPC1LQ4VXU2 614 aaKnown RBP11.59□□□□□ -0.55
LDLR-208ENST00000558518 ATF7IP2Q5U623 682 aa11.59□□□□□ -0.55
LDLR-208ENST00000558518 MAP1SQ66K74 1059 aaPredicted RBP11.59□□□□□ -0.55
LDLR-208ENST00000558518 SEL1L3Q68CR1 1132 aa11.59□□□□□ -0.55
LDLR-208ENST00000558518 JADE1Q6IE81 842 aa11.59□□□□□ -0.55
LDLR-208ENST00000558518 CDKL3Q8IVW4 592 aaPredicted RBP11.59□□□□□ -0.55
LDLR-208ENST00000558518 FAM47BQ8NA70 645 aa11.59□□□□□ -0.55
LDLR-208ENST00000558518 HPDLQ96IR7 371 aa11.59□□□□□ -0.55
LDLR-208ENST00000558518 ZNF518BQ9C0D4 1074 aa11.59□□□□□ -0.55
LDLR-208ENST00000558518 ILKAPQ9H0C8 392 aaPredicted RBP11.59□□□□□ -0.55
LDLR-208ENST00000558518 NRBP2Q9NSY0 501 aa11.59□□□□□ -0.55
LDLR-208ENST00000558518 EPS15L1Q9UBC2 864 aa11.59□□□□□ -0.55
LDLR-208ENST00000558518 HESX1Q9UBX0 185 aa11.59□□□□□ -0.55
LDLR-208ENST00000558518 FETUBQ9UGM5 382 aa11.59□□□□□ -0.55
LDLR-208ENST00000558518 CDY2AQ9Y6F7 541 aa11.59□□□□□ -0.55
LDLR-208ENST00000558518 CDY1Q9Y6F8 540 aa11.59□□□□□ -0.55
LDLR-208ENST00000558518 PDLIM1O00151 329 aa11.59□□□□□ -0.55
LDLR-208ENST00000558518 TRDMT1O14717 391 aaKnown RBP11.59□□□□□ -0.55
LDLR-208ENST00000558518 STRNO43815 780 aa11.59□□□□□ -0.55
LDLR-208ENST00000558518 THRAP10827 490 aa11.59□□□□□ -0.55
LDLR-208ENST00000558518 RXRBP28702 533 aa11.59□□□□□ -0.55
LDLR-208ENST00000558518 ARL4AP40617 200 aa11.59□□□□□ -0.55
LDLR-208ENST00000558518 LPIN1Q14693 890 aa11.59□□□□□ -0.55
LDLR-208ENST00000558518 USP10Q14694 798 aaKnown RBP11.59□□□□□ -0.55
LDLR-208ENST00000558518 NEDD8Q15843 81 aa11.59□□□□□ -0.55
LDLR-208ENST00000558518 CCDC14Q49A88 953 aa11.59□□□□□ -0.55
LDLR-208ENST00000558518 LDLRAP1Q5SW96 308 aa11.59□□□□□ -0.55
LDLR-208ENST00000558518 PMF1Q6P1K2 205 aa11.59□□□□□ -0.55
LDLR-208ENST00000558518 DUS1LQ6P1R4 473 aaKnown RBP11.59□□□□□ -0.55
LDLR-208ENST00000558518 KLHL35Q6PF15 583 aa11.59□□□□□ -0.55
LDLR-208ENST00000558518 C16orf87Q6PH81 154 aa11.59□□□□□ -0.55
LDLR-208ENST00000558518 POTEAQ6S8J7 498 aa11.59□□□□□ -0.55
LDLR-208ENST00000558518 RYBPQ8N488 228 aaPredicted RBP11.59□□□□□ -0.55
LDLR-208ENST00000558518 UBR7Q8N806 425 aa11.59□□□□□ -0.55
LDLR-208ENST00000558518 GIPC3Q8TF64 312 aa11.59□□□□□ -0.55
LDLR-208ENST00000558518 DCDC2Q9UHG0 476 aa11.59□□□□□ -0.55
LDLR-208ENST00000558518 AP4E1Q9UPM8 1137 aa11.59□□□□□ -0.55
LDLR-208ENST00000558518 GJA3Q9Y6H8 435 aa11.59□□□□□ -0.55
LDLR-208ENST00000558518 TCRBV5S1A1TA0A578 114 aa11.58□□□□□ -0.56
LDLR-208ENST00000558518 RNF103O00237 685 aa11.58□□□□□ -0.56
LDLR-208ENST00000558518 VWA5AO00534 786 aa11.58□□□□□ -0.56
LDLR-208ENST00000558518 RNASEH2AO75792 299 aaKnown RBP11.58□□□□□ -0.56
LDLR-208ENST00000558518 ME2P23368 584 aa11.58□□□□□ -0.56
LDLR-208ENST00000558518 YAP1P46937 504 aaKnown RBP11.58□□□□□ -0.56
LDLR-208ENST00000558518 LAMTOR4Q0VGL1 99 aa11.58□□□□□ -0.56
LDLR-208ENST00000558518 TUBB3Q13509 450 aa11.58□□□□□ -0.56
LDLR-208ENST00000558518 HABP4Q5JVS0 413 aaKnown RBP11.58□□□□□ -0.56
LDLR-208ENST00000558518 PPP1R2P3Q6NXS1 205 aa11.58□□□□□ -0.56
LDLR-208ENST00000558518 XKR5Q6UX68 686 aa11.58□□□□□ -0.56
LDLR-208ENST00000558518 FASTKD5Q7L8L6 764 aaKnown RBP11.58□□□□□ -0.56
LDLR-208ENST00000558518 ARCQ7LC44 396 aa11.58□□□□□ -0.56
LDLR-208ENST00000558518 NCAPG2Q86XI2 1143 aa11.58□□□□□ -0.56
LDLR-208ENST00000558518 NLGN1Q8N2Q7 840 aa11.58□□□□□ -0.56
LDLR-208ENST00000558518 FERMT1Q9BQL6 677 aa11.58□□□□□ -0.56
LDLR-208ENST00000558518 GATA5Q9BWX5 397 aaPredicted RBP11.58□□□□□ -0.56
LDLR-208ENST00000558518 SFMBT1Q9UHJ3 866 aa11.58□□□□□ -0.56
LDLR-208ENST00000558518 NEMP2A6NFY4 417 aa11.58□□□□□ -0.56
LDLR-208ENST00000558518 LACTBL1A8MY62 500 aa11.58□□□□□ -0.56
LDLR-208ENST00000558518 WDR46O15213 610 aaKnown RBP11.58□□□□□ -0.56
LDLR-208ENST00000558518 SETSIPP0DME0 302 aa11.58□□□□□ -0.56
LDLR-208ENST00000558518 TGM2P21980 687 aa11.58□□□□□ -0.56
LDLR-208ENST00000558518 EPHX2P34913 555 aa11.58□□□□□ -0.56
LDLR-208ENST00000558518 GRIA4P48058 902 aa11.58□□□□□ -0.56
LDLR-208ENST00000558518 SLC5A3P53794 718 aa11.58□□□□□ -0.56
LDLR-208ENST00000558518 SNAPC2Q13487 334 aa11.58□□□□□ -0.56
LDLR-208ENST00000558518 ARL13AQ5H913 290 aaPredicted RBP11.58□□□□□ -0.56
LDLR-208ENST00000558518 CERCAMQ5T4B2 595 aa11.58□□□□□ -0.56
LDLR-208ENST00000558518 KBTBD6Q86V97 674 aa11.58□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms