RNA–Protein interactions for RNA: ENST00000556689.5

SHMT2-223, Transcript of serine hydroxymethyltransferase 2, human

TSL 3

Gene SHMT2, Length 768 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHMT2-223	ENST00000556689	C5AR1	P21730	350 aa		13.12	□□□□□ -0.31
SHMT2-223	ENST00000556689	EPHA8	P29322	1005 aa	Predicted RBP	13.12	□□□□□ -0.31
SHMT2-223	ENST00000556689	TBX4	P57082	545 aa		13.12	□□□□□ -0.31
SHMT2-223	ENST00000556689	NXPH1	P58417	271 aa		13.12	□□□□□ -0.31
SHMT2-223	ENST00000556689	YWHAE	P62258	255 aa	Known RBP	13.12	□□□□□ -0.31
SHMT2-223	ENST00000556689	DNM1	Q05193	864 aa	Known RBP	13.12	□□□□□ -0.31
SHMT2-223	ENST00000556689	CUL2	Q13617	745 aa		13.12	□□□□□ -0.31
SHMT2-223	ENST00000556689	TBC1D3G	Q6DHY5	549 aa		13.12	□□□□□ -0.31
SHMT2-223	ENST00000556689	TBC1D3C	Q6IPX1	549 aa		13.12	□□□□□ -0.31
SHMT2-223	ENST00000556689	GPR155	Q7Z3F1	870 aa		13.12	□□□□□ -0.31
SHMT2-223	ENST00000556689	TBC1D3	Q8IZP1	549 aa	Predicted RBP	13.12	□□□□□ -0.31
SHMT2-223	ENST00000556689	CACTIN-AS1	Q8N1I8	211 aa		13.12	□□□□□ -0.31
SHMT2-223	ENST00000556689	MFSD2A	Q8NA29	543 aa		13.12	□□□□□ -0.31
SHMT2-223	ENST00000556689	HJURP	Q8NCD3	748 aa	Predicted RBP	13.12	□□□□□ -0.31
SHMT2-223	ENST00000556689	IRGQ	Q8WZA9	623 aa		13.12	□□□□□ -0.31
SHMT2-223	ENST00000556689	EEF2KMT	Q96G04	330 aa		13.12	□□□□□ -0.31
SHMT2-223	ENST00000556689	TMEM131	Q92545	1883 aa		13.11	□□□□□ -0.31
SHMT2-223	ENST00000556689	EDDM13	A0A1B0GTR0	161 aa		13.11	□□□□□ -0.31
SHMT2-223	ENST00000556689	TEX51	A0A1B0GUA7	166 aa		13.11	□□□□□ -0.31
SHMT2-223	ENST00000556689		O00370	1275 aa		13.11	□□□□□ -0.31
SHMT2-223	ENST00000556689	CETN3	O15182	167 aa		13.11	□□□□□ -0.31
SHMT2-223	ENST00000556689	MOCS3	O95396	460 aa		13.11	□□□□□ -0.31
SHMT2-223	ENST00000556689	ADH1B	P00325	375 aa		13.11	□□□□□ -0.31
SHMT2-223	ENST00000556689	EPB41	P11171	864 aa	Known RBP	13.11	□□□□□ -0.31
SHMT2-223	ENST00000556689	GLDC	P23378	1020 aa		13.11	□□□□□ -0.31
SHMT2-223	ENST00000556689	ACTN2	P35609	894 aa		13.11	□□□□□ -0.31
SHMT2-223	ENST00000556689	CTSO	P43234	321 aa	Predicted RBP	13.11	□□□□□ -0.31
SHMT2-223	ENST00000556689	SYK	P43405	635 aa		13.11	□□□□□ -0.31
SHMT2-223	ENST00000556689	ADPRH	P54922	357 aa		13.11	□□□□□ -0.31
SHMT2-223	ENST00000556689	RPS24	P62847	133 aa	Known RBP	13.11	□□□□□ -0.31
SHMT2-223	ENST00000556689	ECT2L	Q008S8	904 aa		13.11	□□□□□ -0.31
SHMT2-223	ENST00000556689	CDH18	Q13634	790 aa		13.11	□□□□□ -0.31
SHMT2-223	ENST00000556689	EDRF1	Q3B7T1	1238 aa		13.11	□□□□□ -0.31
SHMT2-223	ENST00000556689	PKDCC	Q504Y2	493 aa		13.11	□□□□□ -0.31
SHMT2-223	ENST00000556689	FSCB	Q5H9T9	825 aa		13.11	□□□□□ -0.31
SHMT2-223	ENST00000556689	PITRM1	Q5JRX3	1037 aa		13.11	□□□□□ -0.31
SHMT2-223	ENST00000556689	RNF219	Q5W0B1	726 aa	Predicted RBP	13.11	□□□□□ -0.31
SHMT2-223	ENST00000556689	NADSYN1	Q6IA69	706 aa		13.11	□□□□□ -0.31
SHMT2-223	ENST00000556689	PRPF39	Q86UA1	669 aa	Known RBP	13.11	□□□□□ -0.31
SHMT2-223	ENST00000556689	STK40	Q8N2I9	435 aa		13.11	□□□□□ -0.31
SHMT2-223	ENST00000556689	ZNF843	Q8N446	348 aa		13.11	□□□□□ -0.31
SHMT2-223	ENST00000556689	AADAT	Q8N5Z0	425 aa		13.11	□□□□□ -0.31
SHMT2-223	ENST00000556689	SLC35F5	Q8WV83	523 aa		13.11	□□□□□ -0.31
SHMT2-223	ENST00000556689	SLCO3A1	Q9UIG8	710 aa		13.11	□□□□□ -0.31
SHMT2-223	ENST00000556689	CLCA2	Q9UQC9	943 aa		13.11	□□□□□ -0.31
SHMT2-223	ENST00000556689	HPSE	Q9Y251	543 aa		13.11	□□□□□ -0.31
SHMT2-223	ENST00000556689	COQ4	Q9Y3A0	265 aa		13.11	□□□□□ -0.31
SHMT2-223	ENST00000556689	CEP83	Q9Y592	693 aa		13.11	□□□□□ -0.31
SHMT2-223	ENST00000556689	PIK3R2	O00459	728 aa		13.1	□□□□□ -0.31
SHMT2-223	ENST00000556689	BRINP1	O60477	761 aa		13.1	□□□□□ -0.31
SHMT2-223	ENST00000556689	MAGEC1	O60732	1142 aa		13.1	□□□□□ -0.31
SHMT2-223	ENST00000556689	GABBR2	O75899	941 aa		13.1	□□□□□ -0.31
SHMT2-223	ENST00000556689	IL1B	P01584	269 aa		13.1	□□□□□ -0.31
SHMT2-223	ENST00000556689	LTF	P02788	710 aa		13.1	□□□□□ -0.31
SHMT2-223	ENST00000556689	PRR29	P0C7W0	189 aa		13.1	□□□□□ -0.31
SHMT2-223	ENST00000556689	PLA2G2A	P14555	144 aa		13.1	□□□□□ -0.31
SHMT2-223	ENST00000556689	NNMT	P40261	264 aa		13.1	□□□□□ -0.31
SHMT2-223	ENST00000556689	PSMD8	P48556	350 aa		13.1	□□□□□ -0.31
SHMT2-223	ENST00000556689	RGS7	P49802	495 aa		13.1	□□□□□ -0.31
SHMT2-223	ENST00000556689	E2F1	Q01094	437 aa		13.1	□□□□□ -0.31
SHMT2-223	ENST00000556689	DPYD	Q12882	1025 aa		13.1	□□□□□ -0.31
SHMT2-223	ENST00000556689	CBWD6	Q4V339	395 aa		13.1	□□□□□ -0.31
SHMT2-223	ENST00000556689	ZCWPW2	Q504Y3	356 aa		13.1	□□□□□ -0.31
SHMT2-223	ENST00000556689	MS4A13	Q5J8X5	152 aa		13.1	□□□□□ -0.31
SHMT2-223	ENST00000556689	CBWD3	Q5JTY5	395 aa		13.1	□□□□□ -0.31
SHMT2-223	ENST00000556689	CBWD5	Q5RIA9	395 aa		13.1	□□□□□ -0.31
SHMT2-223	ENST00000556689	SFMBT2	Q5VUG0	894 aa		13.1	□□□□□ -0.31
SHMT2-223	ENST00000556689	TCERG1L	Q5VWI1	586 aa		13.1	□□□□□ -0.31
SHMT2-223	ENST00000556689	PMF1	Q6P1K2	205 aa		13.1	□□□□□ -0.31
SHMT2-223	ENST00000556689	LCLAT1	Q6UWP7	414 aa		13.1	□□□□□ -0.31
SHMT2-223	ENST00000556689	RAB11FIP1	Q6WKZ4	1283 aa	Predicted RBP	13.1	□□□□□ -0.31
SHMT2-223	ENST00000556689	MMS22L	Q6ZRQ5	1243 aa		13.1	□□□□□ -0.31
SHMT2-223	ENST00000556689	SPATS2	Q86XZ4	545 aa	Known RBP	13.1	□□□□□ -0.31
SHMT2-223	ENST00000556689	CFAP52	Q8N1V2	620 aa		13.1	□□□□□ -0.31
SHMT2-223	ENST00000556689	RFFL	Q8WZ73	363 aa		13.1	□□□□□ -0.31
SHMT2-223	ENST00000556689	PTPRN2	Q92932	1015 aa		13.1	□□□□□ -0.31
SHMT2-223	ENST00000556689	MYEOV	Q96EZ4	313 aa		13.1	□□□□□ -0.31
SHMT2-223	ENST00000556689	RPL10L	Q96L21	214 aa	Known RBP	13.1	□□□□□ -0.31
SHMT2-223	ENST00000556689	PRICKLE1	Q96MT3	831 aa	Predicted RBP	13.1	□□□□□ -0.31
SHMT2-223	ENST00000556689	NUCKS1	Q9H1E3	243 aa	Known RBP	13.1	□□□□□ -0.31
SHMT2-223	ENST00000556689	KDM4C	Q9H3R0	1056 aa		13.1	□□□□□ -0.31
SHMT2-223	ENST00000556689	COL5A1	P20908	1838 aa	Predicted RBP	13.1	□□□□□ -0.31
SHMT2-223	ENST00000556689	SHROOM3	Q8TF72	1996 aa		13.09	□□□□□ -0.31
SHMT2-223	ENST00000556689	CAPN8	A6NHC0	703 aa		13.09	□□□□□ -0.31
SHMT2-223	ENST00000556689	LAT	O43561	262 aa		13.09	□□□□□ -0.31
SHMT2-223	ENST00000556689	LUC7L3	O95232	432 aa	Known RBP	13.09	□□□□□ -0.31
SHMT2-223	ENST00000556689	PAEP	P09466	180 aa		13.09	□□□□□ -0.31
SHMT2-223	ENST00000556689	ACP1	P24666	158 aa		13.09	□□□□□ -0.31
SHMT2-223	ENST00000556689	MZF1	P28698	734 aa	Predicted RBP	13.09	□□□□□ -0.31
SHMT2-223	ENST00000556689	NUDT1	P36639	197 aa		13.09	□□□□□ -0.31
SHMT2-223	ENST00000556689	INSM1	Q01101	510 aa	Predicted RBP	13.09	□□□□□ -0.31
SHMT2-223	ENST00000556689	TLE3	Q04726	772 aa		13.09	□□□□□ -0.31
SHMT2-223	ENST00000556689	CCDC173	Q0VFZ6	552 aa		13.09	□□□□□ -0.31
SHMT2-223	ENST00000556689	OVGP1	Q12889	678 aa		13.09	□□□□□ -0.31
SHMT2-223	ENST00000556689	STAT4	Q14765	748 aa		13.09	□□□□□ -0.31
SHMT2-223	ENST00000556689	CNGA2	Q16280	664 aa		13.09	□□□□□ -0.31
SHMT2-223	ENST00000556689	TBC1D25	Q3MII6	688 aa		13.09	□□□□□ -0.31
SHMT2-223	ENST00000556689	DCAF6	Q58WW2	860 aa		13.09	□□□□□ -0.31
SHMT2-223	ENST00000556689	DCAF17	Q5H9S7	520 aa	Predicted RBP	13.09	□□□□□ -0.31
SHMT2-223	ENST00000556689	NAPEPLD	Q6IQ20	393 aa		13.09	□□□□□ -0.31

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