RNA–Protein interactions for RNA: ENST00000555557.5

SRP54-208, Transcript of signal recognition particle 54, humanhuman

TSL 2 BASIC

Gene SRP54, Length 1,949 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54-208ENST00000555557 DDX42Q86XP3 938 aaKnown RBP eCLIP10.5□□□□□ -0.73
SRP54-208ENST00000555557 FAM71DQ8N9W8 422 aa10.5□□□□□ -0.73
SRP54-208ENST00000555557 ZSCAN18Q8TBC5 510 aaPredicted RBP10.5□□□□□ -0.73
SRP54-208ENST00000555557 DEPDC1BQ8WUY9 529 aa10.5□□□□□ -0.73
SRP54-208ENST00000555557 BHMTQ93088 406 aa10.5□□□□□ -0.73
SRP54-208ENST00000555557 NKD2Q969F2 451 aaPredicted RBP10.5□□□□□ -0.73
SRP54-208ENST00000555557 AZIN2Q96A70 460 aa10.5□□□□□ -0.73
SRP54-208ENST00000555557 P2RY11Q96G91 374 aa10.5□□□□□ -0.73
SRP54-208ENST00000555557 PRICKLE1Q96MT3 831 aaPredicted RBP10.5□□□□□ -0.73
SRP54-208ENST00000555557 EPB41L5Q9HCM4 733 aa10.5□□□□□ -0.73
SRP54-208ENST00000555557 PPARGC1AQ9UBK2 798 aaKnown RBP10.5□□□□□ -0.73
SRP54-208ENST00000555557 DRG1Q9Y295 367 aaKnown RBP10.5□□□□□ -0.73
SRP54-208ENST00000555557 COL6A3P12111 3177 aa10.49□□□□□ -0.73
SRP54-208ENST00000555557 FGF10O15520 208 aaPredicted RBP10.49□□□□□ -0.73
SRP54-208ENST00000555557 ITGAVP06756 1048 aa10.49□□□□□ -0.73
SRP54-208ENST00000555557 PFKLP17858 780 aa10.49□□□□□ -0.73
SRP54-208ENST00000555557 RBL1P28749 1068 aa10.49□□□□□ -0.73
SRP54-208ENST00000555557 LTBRP36941 435 aa10.49□□□□□ -0.73
SRP54-208ENST00000555557 NR2C2P49116 596 aa10.49□□□□□ -0.73
SRP54-208ENST00000555557 TUBB4BP68371 445 aa10.49□□□□□ -0.73
SRP54-208ENST00000555557 DHX34Q14147 1143 aaKnown RBP10.49□□□□□ -0.73
SRP54-208ENST00000555557 PPP1R7Q15435 360 aa10.49□□□□□ -0.73
SRP54-208ENST00000555557 ARHGAP36Q6ZRI8 547 aa10.49□□□□□ -0.73
SRP54-208ENST00000555557 HTR3DQ70Z44 454 aa10.49□□□□□ -0.73
SRP54-208ENST00000555557 ALLCQ8N6M5 410 aa10.49□□□□□ -0.73
SRP54-208ENST00000555557 GPR161Q8N6U8 529 aaKnown RBP10.49□□□□□ -0.73
SRP54-208ENST00000555557 RTL3Q8N8U3 475 aaKnown RBP10.49□□□□□ -0.73
SRP54-208ENST00000555557 CCNYQ8ND76 341 aa10.49□□□□□ -0.73
SRP54-208ENST00000555557 FGF13Q92913 245 aa10.49□□□□□ -0.73
SRP54-208ENST00000555557 OLFM3Q96PB7 478 aa10.49□□□□□ -0.73
SRP54-208ENST00000555557 FRMD8P1Q9BZ68 369 aaPredicted RBP10.49□□□□□ -0.73
SRP54-208ENST00000555557 S1PR5Q9H228 398 aa10.49□□□□□ -0.73
SRP54-208ENST00000555557 DPH5Q9H2P9 285 aa10.49□□□□□ -0.73
SRP54-208ENST00000555557 ADAM7Q9H2U9 754 aa10.49□□□□□ -0.73
SRP54-208ENST00000555557 STOML2Q9UJZ1 356 aa10.49□□□□□ -0.73
SRP54-208ENST00000555557 LSM7Q9UK45 103 aaKnown RBP10.49□□□□□ -0.73
SRP54-208ENST00000555557 TMEM265A0A087WTH1 108 aa10.48□□□□□ -0.73
SRP54-208ENST00000555557 DFFAO00273 331 aa10.48□□□□□ -0.73
SRP54-208ENST00000555557 RHOQP17081 205 aa10.48□□□□□ -0.73
SRP54-208ENST00000555557 HTR7P34969 479 aa10.48□□□□□ -0.73
SRP54-208ENST00000555557 VIPR2P41587 438 aa10.48□□□□□ -0.73
SRP54-208ENST00000555557 VSNL1P62760 191 aa10.48□□□□□ -0.73
SRP54-208ENST00000555557 AP1B1Q10567 949 aa10.48□□□□□ -0.73
SRP54-208ENST00000555557 MTA1Q13330 715 aa10.48□□□□□ -0.73
SRP54-208ENST00000555557 CTC1Q2NKJ3 1217 aa10.48□□□□□ -0.73
SRP54-208ENST00000555557 TPGS1Q6ZTW0 290 aa10.48□□□□□ -0.73
SRP54-208ENST00000555557 ARHGAP12Q8IWW6 846 aa10.48□□□□□ -0.73
SRP54-208ENST00000555557 NPAS3Q8IXF0 933 aa10.48□□□□□ -0.73
SRP54-208ENST00000555557 TAB3Q8N5C8 712 aaPredicted RBP10.48□□□□□ -0.73
SRP54-208ENST00000555557 GRK7Q8WTQ7 553 aa10.48□□□□□ -0.73
SRP54-208ENST00000555557 RSAD2Q8WXG1 361 aa10.48□□□□□ -0.73
SRP54-208ENST00000555557 LRRC3BQ96PB8 259 aa10.48□□□□□ -0.73
SRP54-208ENST00000555557 SLC39A8Q9C0K1 460 aa10.48□□□□□ -0.73
SRP54-208ENST00000555557 LINC00597Q9H2U6 94 aa10.48□□□□□ -0.73
SRP54-208ENST00000555557 NOL6Q9H6R4 1146 aaKnown RBP10.48□□□□□ -0.73
SRP54-208ENST00000555557 PRDM16Q9HAZ2 1276 aa10.48□□□□□ -0.73
SRP54-208ENST00000555557 USP29Q9HBJ7 922 aa10.48□□□□□ -0.73
SRP54-208ENST00000555557 TMEM248Q9NWD8 314 aa10.48□□□□□ -0.73
SRP54-208ENST00000555557 PLK2Q9NYY3 685 aa10.48□□□□□ -0.73
SRP54-208ENST00000555557 ZNF212Q9UDV6 495 aa10.48□□□□□ -0.73
SRP54-208ENST00000555557 SNX24Q9Y343 169 aa10.48□□□□□ -0.73
SRP54-208ENST00000555557 NEU2Q9Y3R4 380 aa10.48□□□□□ -0.73
SRP54-208ENST00000555557 DENND4CQ5VZ89 1909 aa10.48□□□□□ -0.73
SRP54-208ENST00000555557 FAM187AA6NFU0 413 aa10.48□□□□□ -0.73
SRP54-208ENST00000555557 WASH4PA8MWX3 477 aa10.48□□□□□ -0.73
SRP54-208ENST00000555557 KCNN4O15554 427 aa10.48□□□□□ -0.73
SRP54-208ENST00000555557 KRT14P02533 472 aa10.48□□□□□ -0.73
SRP54-208ENST00000555557 VAV1P15498 845 aa10.48□□□□□ -0.73
SRP54-208ENST00000555557 OR1E1P30953 314 aa10.48□□□□□ -0.73
SRP54-208ENST00000555557 SERPINB6P35237 376 aa10.48□□□□□ -0.73
SRP54-208ENST00000555557 FAM78AQ5JUQ0 283 aa10.48□□□□□ -0.73
SRP54-208ENST00000555557 ATAT1Q5SQI0 421 aa10.48□□□□□ -0.73
SRP54-208ENST00000555557 ACBD5Q5T8D3 534 aaPredicted RBP10.48□□□□□ -0.73
SRP54-208ENST00000555557 Q7L0L9 218 aa10.48□□□□□ -0.73
SRP54-208ENST00000555557 BZW1Q7L1Q6 419 aaKnown RBP10.48□□□□□ -0.73
SRP54-208ENST00000555557 GSPT2Q8IYD1 628 aaKnown RBP10.48□□□□□ -0.73
SRP54-208ENST00000555557 OR52K2Q8NGK3 314 aa10.48□□□□□ -0.73
SRP54-208ENST00000555557 TFB1MQ8WVM0 346 aaKnown RBP10.48□□□□□ -0.73
SRP54-208ENST00000555557 CASKIN2Q8WXE0 1202 aa10.48□□□□□ -0.73
SRP54-208ENST00000555557 IFT81Q8WYA0 676 aa10.48□□□□□ -0.73
SRP54-208ENST00000555557 SLCO2A1Q92959 643 aa10.48□□□□□ -0.73
SRP54-208ENST00000555557 RSPRY1Q96DX4 576 aa10.48□□□□□ -0.73
SRP54-208ENST00000555557 RUNDC3BQ96NL0 473 aa10.48□□□□□ -0.73
SRP54-208ENST00000555557 ERP44Q9BS26 406 aa10.48□□□□□ -0.73
SRP54-208ENST00000555557 FEZ2Q9UHY8 353 aaPredicted RBP10.48□□□□□ -0.73
SRP54-208ENST00000555557 UTP11Q9Y3A2 253 aaKnown RBP10.48□□□□□ -0.73
SRP54-208ENST00000555557 CLUHO75153 1309 aa10.48□□□□□ -0.73
SRP54-208ENST00000555557 PRUNE2Q8WUY3 3088 aa10.47□□□□□ -0.73
SRP54-208ENST00000555557 E2F8A0AVK6 867 aa10.47□□□□□ -0.73
SRP54-208ENST00000555557 BCLAF3A2AJT9 711 aaKnown RBP10.47□□□□□ -0.73
SRP54-208ENST00000555557 TARSL2A2RTX5 802 aaKnown RBP10.47□□□□□ -0.73
SRP54-208ENST00000555557 SOBPA7XYQ1 873 aa10.47□□□□□ -0.73
SRP54-208ENST00000555557 TBL1XO60907 577 aa10.47□□□□□ -0.73
SRP54-208ENST00000555557 LATS1O95835 1130 aa10.47□□□□□ -0.73
SRP54-208ENST00000555557 GAS8O95995 478 aa10.47□□□□□ -0.73
SRP54-208ENST00000555557 HOXB8P17481 243 aaPredicted RBP10.47□□□□□ -0.73
SRP54-208ENST00000555557 GARSP41250 739 aaKnown RBP10.47□□□□□ -0.73
SRP54-208ENST00000555557 CARSP49589 748 aaKnown RBP10.47□□□□□ -0.73
SRP54-208ENST00000555557 PAPOLAP51003 745 aaKnown RBP10.47□□□□□ -0.73
SRP54-208ENST00000555557 LMNB2Q03252 620 aa10.47□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms