RNA–Protein interactions for RNA: ENST00000554604.5

SHMT2-214, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 879 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-214ENST00000554604 CTNNBL1Q8WYA6 563 aaPredicted RBP12.88□□□□□ -0.35
SHMT2-214ENST00000554604 TMA16Q96EY4 203 aaKnown RBP12.88□□□□□ -0.35
SHMT2-214ENST00000554604 ACOX2Q99424 681 aa12.88□□□□□ -0.35
SHMT2-214ENST00000554604 SLC2A11Q9BYW1 496 aa12.88□□□□□ -0.35
SHMT2-214ENST00000554604 ISCUQ9H1K1 167 aa12.88□□□□□ -0.35
SHMT2-214ENST00000554604 ZNF446Q9NWS9 450 aa12.88□□□□□ -0.35
SHMT2-214ENST00000554604 FAM53CQ9NYF3 392 aa12.88□□□□□ -0.35
SHMT2-214ENST00000554604 NOCTQ9UK39 431 aaKnown RBP12.88□□□□□ -0.35
SHMT2-214ENST00000554604 FBXO10Q9UK96 956 aa12.88□□□□□ -0.35
SHMT2-214ENST00000554604 SLC27A6Q9Y2P4 619 aa12.88□□□□□ -0.35
SHMT2-214ENST00000554604 PCDHGA5Q9Y5G8 931 aa12.88□□□□□ -0.35
SHMT2-214ENST00000554604 LOC105378220A0A1B0GUY1 285 aaPredicted RBP12.87□□□□□ -0.35
SHMT2-214ENST00000554604 E5RJQ4 531 aa12.87□□□□□ -0.35
SHMT2-214ENST00000554604 RTN2O75298 545 aa12.87□□□□□ -0.35
SHMT2-214ENST00000554604 CHRNB2P17787 502 aa12.87□□□□□ -0.35
SHMT2-214ENST00000554604 MPLP40238 635 aa12.87□□□□□ -0.35
SHMT2-214ENST00000554604 RPL34P49207 117 aaKnown RBP12.87□□□□□ -0.35
SHMT2-214ENST00000554604 RING1Q06587 406 aa12.87□□□□□ -0.35
SHMT2-214ENST00000554604 STARD3Q14849 445 aa12.87□□□□□ -0.35
SHMT2-214ENST00000554604 AASDHQ4L235 1098 aaPredicted RBP12.87□□□□□ -0.35
SHMT2-214ENST00000554604 CCDC181Q5TID7 509 aa12.87□□□□□ -0.35
SHMT2-214ENST00000554604 CCDC70Q6NSX1 233 aa12.87□□□□□ -0.35
SHMT2-214ENST00000554604 RHOT2Q8IXI1 618 aa12.87□□□□□ -0.35
SHMT2-214ENST00000554604 EPS8L1Q8TE68 723 aa12.87□□□□□ -0.35
SHMT2-214ENST00000554604 RLN3Q8WXF3 142 aa12.87□□□□□ -0.35
SHMT2-214ENST00000554604 ERLEC1Q96DZ1 483 aa12.87□□□□□ -0.35
SHMT2-214ENST00000554604 P2RY11Q96G91 374 aa12.87□□□□□ -0.35
SHMT2-214ENST00000554604 PBKQ96KB5 322 aa12.87□□□□□ -0.35
SHMT2-214ENST00000554604 SERPINB11Q96P15 392 aa12.87□□□□□ -0.35
SHMT2-214ENST00000554604 SLC4A5Q9BY07 1137 aa12.87□□□□□ -0.35
SHMT2-214ENST00000554604 CIPCQ9C0C6 399 aa12.87□□□□□ -0.35
SHMT2-214ENST00000554604 ARFGAP3Q9NP61 516 aa12.87□□□□□ -0.35
SHMT2-214ENST00000554604 CACNA2D2Q9NY47 1150 aa12.87□□□□□ -0.35
SHMT2-214ENST00000554604 DLL3Q9NYJ7 618 aa12.87□□□□□ -0.35
SHMT2-214ENST00000554604 OGFRQ9NZT2 677 aa12.87□□□□□ -0.35
SHMT2-214ENST00000554604 HCN2Q9UL51 889 aa12.87□□□□□ -0.35
SHMT2-214ENST00000554604 CEP83Q9Y592 693 aa12.87□□□□□ -0.35
SHMT2-214ENST00000554604 CKAP5Q14008 2032 aa12.87□□□□□ -0.35
SHMT2-214ENST00000554604 DNAH14Q0VDD8 3507 aa12.86□□□□□ -0.35
SHMT2-214ENST00000554604 TYW5A2RUC4 315 aaKnown RBP12.86□□□□□ -0.35
SHMT2-214ENST00000554604 GFRA2O00451 464 aa12.86□□□□□ -0.35
SHMT2-214ENST00000554604 NPC1O15118 1278 aa12.86□□□□□ -0.35
SHMT2-214ENST00000554604 FTCDO95954 541 aa12.86□□□□□ -0.35
SHMT2-214ENST00000554604 RHOXF2BP0C7M4 288 aa12.86□□□□□ -0.35
SHMT2-214ENST00000554604 ZNF806P0C7X5 589 aa12.86□□□□□ -0.35
SHMT2-214ENST00000554604 GABRG2P18507 467 aa12.86□□□□□ -0.35
SHMT2-214ENST00000554604 BCKDHBP21953 392 aa12.86□□□□□ -0.35
SHMT2-214ENST00000554604 HOXD9P28356 352 aaPredicted RBP12.86□□□□□ -0.35
SHMT2-214ENST00000554604 P2RY2P41231 377 aa12.86□□□□□ -0.35
SHMT2-214ENST00000554604 DHPSP49366 369 aaPredicted RBP12.86□□□□□ -0.35
SHMT2-214ENST00000554604 SNX16P57768 344 aa12.86□□□□□ -0.35
SHMT2-214ENST00000554604 BPIFB4P59827 614 aa12.86□□□□□ -0.35
SHMT2-214ENST00000554604 YWHAZP63104 245 aaKnown RBP12.86□□□□□ -0.35
SHMT2-214ENST00000554604 FOXK2Q01167 660 aa12.86□□□□□ -0.35
SHMT2-214ENST00000554604 CDR2Q01850 454 aa12.86□□□□□ -0.35
SHMT2-214ENST00000554604 PDCLQ13371 301 aa12.86□□□□□ -0.35
SHMT2-214ENST00000554604 EIF4HQ15056 248 aaKnown RBP12.86□□□□□ -0.35
SHMT2-214ENST00000554604 RPS6KA1Q15418 735 aa12.86□□□□□ -0.35
SHMT2-214ENST00000554604 SF3A2Q15428 464 aaKnown RBP12.86□□□□□ -0.35
SHMT2-214ENST00000554604 GEN1Q17RS7 908 aa12.86□□□□□ -0.35
SHMT2-214ENST00000554604 PMS2CLQ68D20 193 aa12.86□□□□□ -0.35
SHMT2-214ENST00000554604 LPCAT2Q7L5N7 544 aa12.86□□□□□ -0.35
SHMT2-214ENST00000554604 TMEM110Q86TL2 294 aa12.86□□□□□ -0.35
SHMT2-214ENST00000554604 NOP9Q86U38 636 aaKnown RBP12.86□□□□□ -0.35
SHMT2-214ENST00000554604 PASD1Q8IV76 773 aa12.86□□□□□ -0.35
SHMT2-214ENST00000554604 NETO1Q8TDF5 533 aa12.86□□□□□ -0.35
SHMT2-214ENST00000554604 DQX1Q8TE96 717 aaKnown RBP12.86□□□□□ -0.35
SHMT2-214ENST00000554604 IPO4Q8TEX9 1081 aaKnown RBP12.86□□□□□ -0.35
SHMT2-214ENST00000554604 SLC20A1Q8WUM9 679 aa12.86□□□□□ -0.35
SHMT2-214ENST00000554604 PIWIL1Q96J94 861 aaKnown RBP12.86□□□□□ -0.35
SHMT2-214ENST00000554604 GABRG3Q99928 467 aa12.86□□□□□ -0.35
SHMT2-214ENST00000554604 DDX50Q9BQ39 737 aaKnown RBP12.86□□□□□ -0.35
SHMT2-214ENST00000554604 RHOXF2Q9BQY4 288 aa12.86□□□□□ -0.35
SHMT2-214ENST00000554604 SYNCQ9H7C4 482 aa12.86□□□□□ -0.35
SHMT2-214ENST00000554604 POPDC2Q9HBU9 364 aa12.86□□□□□ -0.35
SHMT2-214ENST00000554604 VPS45Q9NRW7 570 aa12.86□□□□□ -0.35
SHMT2-214ENST00000554604 ELOVL2Q9NXB9 296 aa12.86□□□□□ -0.35
SHMT2-214ENST00000554604 CYTH4Q9UIA0 394 aa12.86□□□□□ -0.35
SHMT2-214ENST00000554604 STOML2Q9UJZ1 356 aa12.86□□□□□ -0.35
SHMT2-214ENST00000554604 NAALADL1Q9UQQ1 740 aa12.86□□□□□ -0.35
SHMT2-214ENST00000554604 TLR6Q9Y2C9 796 aa12.86□□□□□ -0.35
SHMT2-214ENST00000554604 TNRC6BQ9UPQ9 1833 aaKnown RBP12.85□□□□□ -0.35
SHMT2-214ENST00000554604 NCOR2Q9Y618 2525 aa12.85□□□□□ -0.35
SHMT2-214ENST00000554604 A0A1W2PQF6 199 aa12.85□□□□□ -0.35
SHMT2-214ENST00000554604 WASH3PC4AMC7 463 aa12.85□□□□□ -0.35
SHMT2-214ENST00000554604 IRAK2O43187 625 aa12.85□□□□□ -0.35
SHMT2-214ENST00000554604 PAPSS1O43252 624 aaPredicted RBP12.85□□□□□ -0.35
SHMT2-214ENST00000554604 TIMM44O43615 452 aa12.85□□□□□ -0.35
SHMT2-214ENST00000554604 ACSL4O60488 711 aa12.85□□□□□ -0.35
SHMT2-214ENST00000554604 MTA2O94776 668 aa12.85□□□□□ -0.35
SHMT2-214ENST00000554604 IGLV3-27P01718 113 aa12.85□□□□□ -0.35
SHMT2-214ENST00000554604 FYNP06241 537 aa12.85□□□□□ -0.35
SHMT2-214ENST00000554604 CYP11B1P15538 503 aa12.85□□□□□ -0.35
SHMT2-214ENST00000554604 FMO1Q01740 532 aa12.85□□□□□ -0.35
SHMT2-214ENST00000554604 NNTQ13423 1086 aa12.85□□□□□ -0.35
SHMT2-214ENST00000554604 KIAA1211LQ6NV74 962 aa12.85□□□□□ -0.35
SHMT2-214ENST00000554604 RFWD3Q6PCD5 774 aa12.85□□□□□ -0.35
SHMT2-214ENST00000554604 PEX26Q7Z412 305 aa12.85□□□□□ -0.35
SHMT2-214ENST00000554604 CYP2U1Q7Z449 544 aa12.85□□□□□ -0.35
SHMT2-214ENST00000554604 SLC47A2Q86VL8 602 aa12.85□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms