RNA–Protein interactions for RNA: ENST00000553437.1

CCDC88C-206, Transcript of coiled-coil domain containing 88C, human

TSL 2

Gene CCDC88C, Length 550 nt, Biotype retained intron, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CCDC88C-206	ENST00000553437	AGPAT1	Q99943	283 aa		10.61	□□□□□ -0.71
CCDC88C-206	ENST00000553437	TKTL2	Q9H0I9	626 aa		10.61	□□□□□ -0.71
CCDC88C-206	ENST00000553437	WDCP	Q9H6R7	721 aa		10.61	□□□□□ -0.71
CCDC88C-206	ENST00000553437	PRDM16	Q9HAZ2	1276 aa		10.61	□□□□□ -0.71
CCDC88C-206	ENST00000553437	CBX8	Q9HC52	389 aa		10.61	□□□□□ -0.71
CCDC88C-206	ENST00000553437	PRSS16	Q9NQE7	514 aa		10.61	□□□□□ -0.71
CCDC88C-206	ENST00000553437	ITM2C	Q9NQX7	267 aa		10.61	□□□□□ -0.71
CCDC88C-206	ENST00000553437	KIAA1522	Q9P206	1035 aa	Predicted RBP	10.61	□□□□□ -0.71
CCDC88C-206	ENST00000553437	USP36	Q9P275	1121 aa	Known RBP	10.61	□□□□□ -0.71
CCDC88C-206	ENST00000553437	STAP1	Q9ULZ2	295 aa		10.61	□□□□□ -0.71
CCDC88C-206	ENST00000553437	CYP8B1	Q9UNU6	501 aa		10.61	□□□□□ -0.71
CCDC88C-206	ENST00000553437	SNX10	Q9Y5X0	201 aa		10.61	□□□□□ -0.71
CCDC88C-206	ENST00000553437	CEP250	Q9BV73	2442 aa		10.6	□□□□□ -0.71
CCDC88C-206	ENST00000553437	LOC105378220	A0A1B0GUY1	285 aa	Predicted RBP	10.6	□□□□□ -0.71
CCDC88C-206	ENST00000553437		A0A1W2PQC6	194 aa		10.6	□□□□□ -0.71
CCDC88C-206	ENST00000553437	GJB6	O95452	261 aa		10.6	□□□□□ -0.71
CCDC88C-206	ENST00000553437	F9	P00740	461 aa		10.6	□□□□□ -0.71
CCDC88C-206	ENST00000553437	IGLV3-19	P01714	112 aa		10.6	□□□□□ -0.71
CCDC88C-206	ENST00000553437	ASL	P04424	464 aa		10.6	□□□□□ -0.71
CCDC88C-206	ENST00000553437	MZF1	P28698	734 aa	Predicted RBP	10.6	□□□□□ -0.71
CCDC88C-206	ENST00000553437	GGCX	P38435	758 aa		10.6	□□□□□ -0.71
CCDC88C-206	ENST00000553437	CTSO	P43234	321 aa	Predicted RBP	10.6	□□□□□ -0.71
CCDC88C-206	ENST00000553437	PLK1	P53350	603 aa		10.6	□□□□□ -0.71
CCDC88C-206	ENST00000553437	GSC	P56915	257 aa	Predicted RBP	10.6	□□□□□ -0.71
CCDC88C-206	ENST00000553437	DEUP1	Q05D60	604 aa		10.6	□□□□□ -0.71
CCDC88C-206	ENST00000553437	NR1I3	Q14994	352 aa		10.6	□□□□□ -0.71
CCDC88C-206	ENST00000553437	RAB6C	Q53S08	254 aa		10.6	□□□□□ -0.71
CCDC88C-206	ENST00000553437	RABGAP1L	Q5R372	815 aa		10.6	□□□□□ -0.71
CCDC88C-206	ENST00000553437	TTC39B	Q5VTQ0	682 aa	Predicted RBP	10.6	□□□□□ -0.71
CCDC88C-206	ENST00000553437	KIAA1324	Q6UXG2	1013 aa	Known RBP	10.6	□□□□□ -0.71
CCDC88C-206	ENST00000553437	ARMCX6	Q7L4S7	300 aa		10.6	□□□□□ -0.71
CCDC88C-206	ENST00000553437	CYP2U1	Q7Z449	544 aa		10.6	□□□□□ -0.71
CCDC88C-206	ENST00000553437	PHLDB2	Q86SQ0	1253 aa		10.6	□□□□□ -0.71
CCDC88C-206	ENST00000553437	PHF13	Q86YI8	300 aa	Predicted RBP	10.6	□□□□□ -0.71
CCDC88C-206	ENST00000553437	SLC41A1	Q8IVJ1	513 aa		10.6	□□□□□ -0.71
CCDC88C-206	ENST00000553437	DEFB119	Q8N690	84 aa		10.6	□□□□□ -0.71
CCDC88C-206	ENST00000553437	EMC1	Q8N766	993 aa		10.6	□□□□□ -0.71
CCDC88C-206	ENST00000553437	KDM1B	Q8NB78	822 aa		10.6	□□□□□ -0.71
CCDC88C-206	ENST00000553437	OR52K2	Q8NGK3	314 aa		10.6	□□□□□ -0.71
CCDC88C-206	ENST00000553437	JOSD2	Q8TAC2	188 aa		10.6	□□□□□ -0.71
CCDC88C-206	ENST00000553437	NETO1	Q8TDF5	533 aa		10.6	□□□□□ -0.71
CCDC88C-206	ENST00000553437	SIPA1	Q96FS4	1042 aa		10.6	□□□□□ -0.71
CCDC88C-206	ENST00000553437	C1orf74	Q96LT6	269 aa		10.6	□□□□□ -0.71
CCDC88C-206	ENST00000553437	CFAP57	Q96MR6	1250 aa		10.6	□□□□□ -0.71
CCDC88C-206	ENST00000553437	RPRD1A	Q96P16	312 aa	Predicted RBP	10.6	□□□□□ -0.71
CCDC88C-206	ENST00000553437	PHF12	Q96QT6	1004 aa		10.6	□□□□□ -0.71
CCDC88C-206	ENST00000553437	C11orf70	Q9BRQ4	267 aa		10.6	□□□□□ -0.71
CCDC88C-206	ENST00000553437	SIK2	Q9H0K1	926 aa		10.6	□□□□□ -0.71
CCDC88C-206	ENST00000553437	RAB6C	Q9H0N0	254 aa		10.6	□□□□□ -0.71
CCDC88C-206	ENST00000553437	MTG2	Q9H4K7	406 aa		10.6	□□□□□ -0.71
CCDC88C-206	ENST00000553437	METTL5	Q9NRN9	209 aa	Known RBP	10.6	□□□□□ -0.71
CCDC88C-206	ENST00000553437	TMPRSS4	Q9NRS4	437 aa		10.6	□□□□□ -0.71
CCDC88C-206	ENST00000553437	TMEM74B	Q9NUR3	256 aa		10.6	□□□□□ -0.71
CCDC88C-206	ENST00000553437	TMEM51	Q9NW97	253 aa		10.6	□□□□□ -0.71
CCDC88C-206	ENST00000553437	WSB2	Q9NYS7	404 aa	Predicted RBP	10.6	□□□□□ -0.71
CCDC88C-206	ENST00000553437	VANGL2	Q9ULK5	521 aa		10.6	□□□□□ -0.71
CCDC88C-206	ENST00000553437	MYO6	Q9UM54	1294 aa		10.6	□□□□□ -0.71
CCDC88C-206	ENST00000553437	ERVW-1	Q9UQF0	538 aa		10.6	□□□□□ -0.71
CCDC88C-206	ENST00000553437	USP24	Q9UPU5	2620 aa		10.6	□□□□□ -0.71
CCDC88C-206	ENST00000553437	IGLV3-10	A0A075B6K4	115 aa		10.59	□□□□□ -0.71
CCDC88C-206	ENST00000553437		A0A1B0GVM2	712 aa		10.59	□□□□□ -0.71
CCDC88C-206	ENST00000553437	TCRBV5S1A1T	A0A578	114 aa		10.59	□□□□□ -0.71
CCDC88C-206	ENST00000553437	TCAF2	A6NFQ2	919 aa		10.59	□□□□□ -0.71
CCDC88C-206	ENST00000553437	C2CD4B	A6NLJ0	364 aa		10.59	□□□□□ -0.71
CCDC88C-206	ENST00000553437	DRGX	A6NNA5	263 aa		10.59	□□□□□ -0.71
CCDC88C-206	ENST00000553437	PATE3	B3GLJ2	98 aa		10.59	□□□□□ -0.71
CCDC88C-206	ENST00000553437	SLC30A4	O14863	429 aa		10.59	□□□□□ -0.71
CCDC88C-206	ENST00000553437	AP5Z1	O43299	807 aa		10.59	□□□□□ -0.71
CCDC88C-206	ENST00000553437	CNTN5	O94779	1100 aa		10.59	□□□□□ -0.71
CCDC88C-206	ENST00000553437	SRPRA	P08240	638 aa	Known RBP	10.59	□□□□□ -0.71
CCDC88C-206	ENST00000553437	PDGFRA	P16234	1089 aa		10.59	□□□□□ -0.71
CCDC88C-206	ENST00000553437	FER	P16591	822 aa		10.59	□□□□□ -0.71
CCDC88C-206	ENST00000553437	SDHB	P21912	280 aa		10.59	□□□□□ -0.71
CCDC88C-206	ENST00000553437	ITPKA	P23677	461 aa		10.59	□□□□□ -0.71
CCDC88C-206	ENST00000553437	CD6	P30203	668 aa		10.59	□□□□□ -0.71
CCDC88C-206	ENST00000553437	RDX	P35241	583 aa	Known RBP	10.59	□□□□□ -0.71
CCDC88C-206	ENST00000553437	NSF	P46459	744 aa	Known RBP	10.59	□□□□□ -0.71
CCDC88C-206	ENST00000553437	TPMT	P51580	245 aa		10.59	□□□□□ -0.71
CCDC88C-206	ENST00000553437	LIMK1	P53667	647 aa		10.59	□□□□□ -0.71
CCDC88C-206	ENST00000553437	ECT2L	Q008S8	904 aa		10.59	□□□□□ -0.71
CCDC88C-206	ENST00000553437	RPL6	Q02878	288 aa	Known RBP	10.59	□□□□□ -0.71
CCDC88C-206	ENST00000553437	ZNF33A	Q06730	810 aa		10.59	□□□□□ -0.71
CCDC88C-206	ENST00000553437	SLC12A1	Q13621	1099 aa		10.59	□□□□□ -0.71
CCDC88C-206	ENST00000553437	ARID5B	Q14865	1188 aa		10.59	□□□□□ -0.71
CCDC88C-206	ENST00000553437	HNRNPA1L2	Q32P51	320 aa	Known RBP	10.59	□□□□□ -0.71
CCDC88C-206	ENST00000553437	CCDC14	Q49A88	953 aa		10.59	□□□□□ -0.71
CCDC88C-206	ENST00000553437	FILIP1L	Q4L180	1135 aa		10.59	□□□□□ -0.71
CCDC88C-206	ENST00000553437	AASDH	Q4L235	1098 aa	Predicted RBP	10.59	□□□□□ -0.71
CCDC88C-206	ENST00000553437	SH3PXD2A	Q5TCZ1	1133 aa		10.59	□□□□□ -0.71
CCDC88C-206	ENST00000553437	PEAR1	Q5VY43	1037 aa	Predicted RBP	10.59	□□□□□ -0.71
CCDC88C-206	ENST00000553437	LYSMD4	Q5XG99	296 aa		10.59	□□□□□ -0.71
CCDC88C-206	ENST00000553437	MON1B	Q7L1V2	547 aa		10.59	□□□□□ -0.71
CCDC88C-206	ENST00000553437	LUZP1	Q86V48	1076 aa		10.59	□□□□□ -0.71
CCDC88C-206	ENST00000553437	SYT12	Q8IV01	421 aa		10.59	□□□□□ -0.71
CCDC88C-206	ENST00000553437	CCDC117	Q8IWD4	279 aa	Predicted RBP	10.59	□□□□□ -0.71
CCDC88C-206	ENST00000553437	RXFP2	Q8WXD0	754 aa		10.59	□□□□□ -0.71
CCDC88C-206	ENST00000553437	PIGK	Q92643	395 aa		10.59	□□□□□ -0.71
CCDC88C-206	ENST00000553437	PRCC	Q92733	491 aa	Predicted RBP	10.59	□□□□□ -0.71
CCDC88C-206	ENST00000553437	ZNF419	Q96HQ0	510 aa	Predicted RBP	10.59	□□□□□ -0.71
CCDC88C-206	ENST00000553437	TTYH3	Q9C0H2	523 aa		10.59	□□□□□ -0.71

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