RNA–Protein interactions for RNA: ENST00000549578.5

VPS29-206, Transcript of VPS29, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS29, Length 1,523 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-206ENST00000549578 C3orf70A6NLC5 250 aaPredicted RBP21.8■■□□□ 1.08
VPS29-206ENST00000549578 MIF4GDA9UHW6 222 aaKnown RBP21.8■■□□□ 1.08
VPS29-206ENST00000549578 DDX3YO15523 660 aaKnown RBP21.8■■□□□ 1.08
VPS29-206ENST00000549578 RHOQP17081 205 aa21.8■■□□□ 1.08
VPS29-206ENST00000549578 HTR7P34969 479 aa21.8■■□□□ 1.08
VPS29-206ENST00000549578 PEX5P50542 639 aa21.8■■□□□ 1.08
VPS29-206ENST00000549578 ZNF135P52742 658 aaPredicted RBP21.8■■□□□ 1.08
VPS29-206ENST00000549578 AMPD2Q01433 879 aa21.8■■□□□ 1.08
VPS29-206ENST00000549578 KDSRQ06136 332 aa21.8■■□□□ 1.08
VPS29-206ENST00000549578 DPYSQ14117 519 aa21.8■■□□□ 1.08
VPS29-206ENST00000549578 MEI1Q5TIA1 1274 aa21.8■■□□□ 1.08
VPS29-206ENST00000549578 MAP7D3Q8IWC1 876 aa21.8■■□□□ 1.08
VPS29-206ENST00000549578 HES6Q96HZ4 224 aa21.8■■□□□ 1.08
VPS29-206ENST00000549578 FBRSL1Q9HCM7 1045 aaKnown RBP21.8■■□□□ 1.08
VPS29-206ENST00000549578 NDFIP2Q9NV92 336 aa21.8■■□□□ 1.08
VPS29-206ENST00000549578 DEC1Q9P2X7 70 aa21.8■■□□□ 1.08
VPS29-206ENST00000549578 FBXO10Q9UK96 956 aa21.8■■□□□ 1.08
VPS29-206ENST00000549578 KIAA1549LQ6ZVL6 1849 aa21.8■■□□□ 1.08
VPS29-206ENST00000549578 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP21.8■■□□□ 1.08
VPS29-206ENST00000549578 GLULP15104 373 aa21.8■■□□□ 1.08
VPS29-206ENST00000549578 ERCC2P18074 760 aa21.8■■□□□ 1.08
VPS29-206ENST00000549578 CD72P21854 359 aa21.8■■□□□ 1.08
VPS29-206ENST00000549578 AMPD1P23109 780 aa21.8■■□□□ 1.08
VPS29-206ENST00000549578 HLA-FP30511 346 aa21.8■■□□□ 1.08
VPS29-206ENST00000549578 HCAR3P49019 387 aa21.8■■□□□ 1.08
VPS29-206ENST00000549578 DGKGP49619 791 aa21.8■■□□□ 1.08
VPS29-206ENST00000549578 ZNF177Q13360 481 aaPredicted RBP21.8■■□□□ 1.08
VPS29-206ENST00000549578 CXorf57Q6NSI4 855 aaKnown RBP21.8■■□□□ 1.08
VPS29-206ENST00000549578 ANKS1BQ7Z6G8 1248 aa21.8■■□□□ 1.08
VPS29-206ENST00000549578 CCDC117Q8IWD4 279 aaPredicted RBP21.8■■□□□ 1.08
VPS29-206ENST00000549578 SIX5Q8N196 739 aa21.8■■□□□ 1.08
VPS29-206ENST00000549578 SLC35F6Q8N357 371 aa21.8■■□□□ 1.08
VPS29-206ENST00000549578 UBL4BQ8N7F7 174 aa21.8■■□□□ 1.08
VPS29-206ENST00000549578 RTL3Q8N8U3 475 aaKnown RBP21.8■■□□□ 1.08
VPS29-206ENST00000549578 OR52K2Q8NGK3 314 aa21.8■■□□□ 1.08
VPS29-206ENST00000549578 FIBINQ8TAL6 211 aa21.8■■□□□ 1.08
VPS29-206ENST00000549578 P2RY13Q9BPV8 354 aa21.8■■□□□ 1.08
VPS29-206ENST00000549578 ZNF670Q9BS34 389 aa21.8■■□□□ 1.08
VPS29-206ENST00000549578 SLC2A11Q9BYW1 496 aa21.8■■□□□ 1.08
VPS29-206ENST00000549578 CATSPERBQ9H7T0 1116 aa21.8■■□□□ 1.08
VPS29-206ENST00000549578 ARHGEF4Q9NR80 690 aa21.8■■□□□ 1.08
VPS29-206ENST00000549578 TMEM248Q9NWD8 314 aa21.8■■□□□ 1.08
VPS29-206ENST00000549578 RCOR3Q9P2K3 495 aaPredicted RBP21.8■■□□□ 1.08
VPS29-206ENST00000549578 DNAI1Q9UI46 699 aa21.8■■□□□ 1.08
VPS29-206ENST00000549578 FGF10O15520 208 aaPredicted RBP21.79■■□□□ 1.08
VPS29-206ENST00000549578 DCXO43602 365 aa21.79■■□□□ 1.08
VPS29-206ENST00000549578 ZRANB2O95218 330 aaKnown RBP eCLIP21.79■■□□□ 1.081e-7■■■■□ 19.3
VPS29-206ENST00000549578 CISD3P0C7P0 127 aa21.79■■□□□ 1.08
VPS29-206ENST00000549578 OR1E1P30953 314 aa21.79■■□□□ 1.08
VPS29-206ENST00000549578 CD70P32970 193 aa21.79■■□□□ 1.08
VPS29-206ENST00000549578 EIF2DP41214 584 aaKnown RBP21.79■■□□□ 1.08
VPS29-206ENST00000549578 NUMBP49757 651 aa21.79■■□□□ 1.08
VPS29-206ENST00000549578 GALK1P51570 392 aa21.79■■□□□ 1.08
VPS29-206ENST00000549578 RWDD2BP57060 319 aa21.79■■□□□ 1.08
VPS29-206ENST00000549578 PON2Q15165 354 aa21.79■■□□□ 1.08
VPS29-206ENST00000549578 LLGL1Q15334 1064 aa21.79■■□□□ 1.08
VPS29-206ENST00000549578 GRAMD4Q6IC98 578 aa21.79■■□□□ 1.08
VPS29-206ENST00000549578 MFSD7Q6UXD7 560 aa21.79■■□□□ 1.08
VPS29-206ENST00000549578 PHTF2Q8N3S3 785 aa21.79■■□□□ 1.08
VPS29-206ENST00000549578 PNKPQ96T60 521 aa21.79■■□□□ 1.08
VPS29-206ENST00000549578 ABCB8Q9NUT2 735 aa21.79■■□□□ 1.08
VPS29-206ENST00000549578 MFHAS1Q9Y4C4 1052 aa21.79■■□□□ 1.08
VPS29-206ENST00000549578 PALM2-AKAP2B1ALY0 433 aaPredicted RBP21.78■■□□□ 1.08
VPS29-206ENST00000549578 SLC34A2O95436 690 aa21.78■■□□□ 1.08
VPS29-206ENST00000549578 PRKCQQ04759 706 aa21.78■■□□□ 1.08
VPS29-206ENST00000549578 LMAN2Q12907 356 aa21.78■■□□□ 1.08
VPS29-206ENST00000549578 ANKRD20A8PQ5CZ79 823 aa21.78■■□□□ 1.08
VPS29-206ENST00000549578 CCDC50Q8IVM0 306 aa21.78■■□□□ 1.08
VPS29-206ENST00000549578 SFTPA1Q8IWL2 248 aa21.78■■□□□ 1.08
VPS29-206ENST00000549578 EXD1Q8NHP7 514 aa21.78■■□□□ 1.08
VPS29-206ENST00000549578 PCDH19Q8TAB3 1148 aa21.78■■□□□ 1.08
VPS29-206ENST00000549578 FAM3CQ92520 227 aa21.78■■□□□ 1.08
VPS29-206ENST00000549578 FAF2Q96CS3 445 aa21.78■■□□□ 1.08
VPS29-206ENST00000549578 MSANTD3Q96H12 275 aa21.78■■□□□ 1.08
VPS29-206ENST00000549578 ETNK2Q9NVF9 386 aa21.78■■□□□ 1.08
VPS29-206ENST00000549578 TBC1D30Q9Y2I9 924 aa21.78■■□□□ 1.08
VPS29-206ENST00000549578 WASH4PA8MWX3 477 aa21.77■■□□□ 1.08
VPS29-206ENST00000549578 ENC1O14682 589 aa21.77■■□□□ 1.08
VPS29-206ENST00000549578 RHOCP08134 193 aa21.77■■□□□ 1.08
VPS29-206ENST00000549578 MAPKAPK2P49137 400 aa21.77■■□□□ 1.08
VPS29-206ENST00000549578 GNG11P61952 73 aa21.77■■□□□ 1.08
VPS29-206ENST00000549578 RPS6KA1Q15418 735 aa21.77■■□□□ 1.08
VPS29-206ENST00000549578 GEN1Q17RS7 908 aa21.77■■□□□ 1.08
VPS29-206ENST00000549578 SPOCD1Q6ZMY3 1216 aa21.77■■□□□ 1.08
VPS29-206ENST00000549578 RCOR2Q8IZ40 523 aa21.77■■□□□ 1.08
VPS29-206ENST00000549578 EDAQ92838 391 aa21.77■■□□□ 1.08
VPS29-206ENST00000549578 RBM41Q96IZ5 413 aaKnown RBP21.77■■□□□ 1.08
VPS29-206ENST00000549578 LMLNQ96KR4 655 aa21.77■■□□□ 1.08
VPS29-206ENST00000549578 TLR10Q9BXR5 811 aa21.77■■□□□ 1.08
VPS29-206ENST00000549578 GGA2Q9UJY4 613 aa21.77■■□□□ 1.08
VPS29-206ENST00000549578 DCLK1O15075 740 aa21.76■■□□□ 1.07
VPS29-206ENST00000549578 KAT7O95251 611 aa21.76■■□□□ 1.07
VPS29-206ENST00000549578 PYGMP11217 842 aa21.76■■□□□ 1.07
VPS29-206ENST00000549578 PABPC1P11940 636 aaKnown RBP21.76■■□□□ 1.07
VPS29-206ENST00000549578 MZF1P28698 734 aaPredicted RBP21.76■■□□□ 1.07
VPS29-206ENST00000549578 CSKP41240 450 aa21.76■■□□□ 1.07
VPS29-206ENST00000549578 CDKN2BP42772 138 aa21.76■■□□□ 1.07
VPS29-206ENST00000549578 ZNF211Q13398 564 aaPredicted RBP21.76■■□□□ 1.07
VPS29-206ENST00000549578 C6orf118Q5T5N4 469 aa21.76■■□□□ 1.07
VPS29-206ENST00000549578 DCAF12L1Q5VU92 463 aa21.76■■□□□ 1.07
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms