RNA–Protein interactions for RNA: ENST00000548945.6

PTCH1-218, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 243 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-218ENST00000548945 CAMK2BQ13554 666 aa13.31□□□□□ -0.28
PTCH1-218ENST00000548945 CCDC40Q4G0X9 1142 aa13.31□□□□□ -0.28
PTCH1-218ENST00000548945 PITRM1Q5JRX3 1037 aa13.31□□□□□ -0.28
PTCH1-218ENST00000548945 KCNT1Q5JUK3 1230 aa13.31□□□□□ -0.28
PTCH1-218ENST00000548945 ELOA2Q8IYF1 753 aaPredicted RBP13.31□□□□□ -0.28
PTCH1-218ENST00000548945 CARNMT1Q8N4J0 409 aa13.31□□□□□ -0.28
PTCH1-218ENST00000548945 OR2T34Q8NGX1 318 aa13.31□□□□□ -0.28
PTCH1-218ENST00000548945 GANCQ8TET4 914 aa13.31□□□□□ -0.28
PTCH1-218ENST00000548945 STK32AQ8WU08 396 aa13.31□□□□□ -0.28
PTCH1-218ENST00000548945 NUCKS1Q9H1E3 243 aaKnown RBP13.31□□□□□ -0.28
PTCH1-218ENST00000548945 CNTN6Q9UQ52 1028 aa13.31□□□□□ -0.28
PTCH1-218ENST00000548945 ERVW-1Q9UQF0 538 aa13.31□□□□□ -0.28
PTCH1-218ENST00000548945 PCDHGA1Q9Y5H4 931 aa13.31□□□□□ -0.28
PTCH1-218ENST00000548945 DOCK9Q9BZ29 2069 aa13.3□□□□□ -0.28
PTCH1-218ENST00000548945 MID1O15344 667 aa13.3□□□□□ -0.28
PTCH1-218ENST00000548945 ADH1BP00325 375 aa13.3□□□□□ -0.28
PTCH1-218ENST00000548945 APOEP02649 317 aa13.3□□□□□ -0.28
PTCH1-218ENST00000548945 SLC8A1P32418 973 aa13.3□□□□□ -0.28
PTCH1-218ENST00000548945 GPD2P43304 727 aa13.3□□□□□ -0.28
PTCH1-218ENST00000548945 SLC12A1Q13621 1099 aa13.3□□□□□ -0.28
PTCH1-218ENST00000548945 DCAF6Q58WW2 860 aa13.3□□□□□ -0.28
PTCH1-218ENST00000548945 FSCBQ5H9T9 825 aa13.3□□□□□ -0.28
PTCH1-218ENST00000548945 NCEH1Q6PIU2 408 aa13.3□□□□□ -0.28
PTCH1-218ENST00000548945 LAYNQ6UX15 382 aa13.3□□□□□ -0.28
PTCH1-218ENST00000548945 PDZD3Q86UT5 571 aa13.3□□□□□ -0.28
PTCH1-218ENST00000548945 TMPRSS12Q86WS5 348 aa13.3□□□□□ -0.28
PTCH1-218ENST00000548945 DHX40Q8IX18 779 aaKnown RBP13.3□□□□□ -0.28
PTCH1-218ENST00000548945 SCUBE3Q8IX30 993 aa13.3□□□□□ -0.28
PTCH1-218ENST00000548945 PDCD7Q8N8D1 485 aaKnown RBP13.3□□□□□ -0.28
PTCH1-218ENST00000548945 KAT5Q92993 513 aa13.3□□□□□ -0.28
PTCH1-218ENST00000548945 FAM149B1Q96BN6 582 aa13.3□□□□□ -0.28
PTCH1-218ENST00000548945 BTN2A3PQ96KV6 586 aa13.3□□□□□ -0.28
PTCH1-218ENST00000548945 ELF4Q99607 663 aaPredicted RBP13.3□□□□□ -0.28
PTCH1-218ENST00000548945 OMDQ99983 421 aa13.3□□□□□ -0.28
PTCH1-218ENST00000548945 MIS12Q9H081 205 aa13.3□□□□□ -0.28
PTCH1-218ENST00000548945 NEUROG2Q9H2A3 272 aa13.3□□□□□ -0.28
PTCH1-218ENST00000548945 MTG2Q9H4K7 406 aa13.3□□□□□ -0.28
PTCH1-218ENST00000548945 FTSJ1Q9UET6 329 aa13.3□□□□□ -0.28
PTCH1-218ENST00000548945 SERGEFQ9UGK8 458 aa13.3□□□□□ -0.28
PTCH1-218ENST00000548945 NAALADL1Q9UQQ1 740 aa13.3□□□□□ -0.28
PTCH1-218ENST00000548945 RAXQ9Y2V3 346 aa13.3□□□□□ -0.28
PTCH1-218ENST00000548945 PTPRQQ9UMZ3 2332 aa13.3□□□□□ -0.28
PTCH1-218ENST00000548945 MYLKQ15746 1914 aa13.29□□□□□ -0.28
PTCH1-218ENST00000548945 A0A1W2PP55 124 aa13.29□□□□□ -0.28
PTCH1-218ENST00000548945 BICDL2A1A5D9 508 aa13.29□□□□□ -0.28
PTCH1-218ENST00000548945 TRABD2BA6NFA1 517 aa13.29□□□□□ -0.28
PTCH1-218ENST00000548945 FAM47DPA6NHR8 397 aa13.29□□□□□ -0.28
PTCH1-218ENST00000548945 KCNK3O14649 394 aa13.29□□□□□ -0.28
PTCH1-218ENST00000548945 RNASEH2AO75792 299 aaKnown RBP13.29□□□□□ -0.28
PTCH1-218ENST00000548945 IGLV3-25P01717 112 aa13.29□□□□□ -0.28
PTCH1-218ENST00000548945 C1SP09871 688 aa13.29□□□□□ -0.28
PTCH1-218ENST00000548945 GOT1P17174 413 aa13.29□□□□□ -0.28
PTCH1-218ENST00000548945 C5AR1P21730 350 aa13.29□□□□□ -0.28
PTCH1-218ENST00000548945 CD38P28907 300 aa13.29□□□□□ -0.28
PTCH1-218ENST00000548945 VASPP50552 380 aaPredicted RBP13.29□□□□□ -0.28
PTCH1-218ENST00000548945 SULT2A1Q06520 285 aa13.29□□□□□ -0.28
PTCH1-218ENST00000548945 ELAVL3Q14576 367 aaKnown RBP13.29□□□□□ -0.28
PTCH1-218ENST00000548945 COL28A1Q2UY09 1125 aa13.29□□□□□ -0.28
PTCH1-218ENST00000548945 RNF219Q5W0B1 726 aaPredicted RBP13.29□□□□□ -0.28
PTCH1-218ENST00000548945 TTI2Q6NXR4 508 aa13.29□□□□□ -0.28
PTCH1-218ENST00000548945 C19orf48Q6RUI8 117 aa13.29□□□□□ -0.28
PTCH1-218ENST00000548945 SND1Q7KZF4 910 aaKnown RBP eCLIP13.29□□□□□ -0.28
PTCH1-218ENST00000548945 RRAGAQ7L523 313 aa13.29□□□□□ -0.28
PTCH1-218ENST00000548945 TAC4Q86UU9 113 aa13.29□□□□□ -0.28
PTCH1-218ENST00000548945 MMAAQ8IVH4 418 aaKnown RBP13.29□□□□□ -0.28
PTCH1-218ENST00000548945 EHBP1Q8NDI1 1231 aa13.29□□□□□ -0.28
PTCH1-218ENST00000548945 MYEOVQ96EZ4 313 aa13.29□□□□□ -0.28
PTCH1-218ENST00000548945 SLC6A18Q96N87 628 aa13.29□□□□□ -0.28
PTCH1-218ENST00000548945 MED15Q96RN5 788 aa13.29□□□□□ -0.28
PTCH1-218ENST00000548945 FAM129BQ96TA1 746 aa13.29□□□□□ -0.28
PTCH1-218ENST00000548945 SLC4A5Q9BY07 1137 aa13.29□□□□□ -0.28
PTCH1-218ENST00000548945 POPDC2Q9HBU9 364 aa13.29□□□□□ -0.28
PTCH1-218ENST00000548945 ST7Q9NRC1 585 aa13.29□□□□□ -0.28
PTCH1-218ENST00000548945 TJP2Q9UDY2 1190 aa13.29□□□□□ -0.28
PTCH1-218ENST00000548945 A0A1W2PR77 199 aa13.28□□□□□ -0.28
PTCH1-218ENST00000548945 GOLGA8CPA6NN73 597 aa13.28□□□□□ -0.28
PTCH1-218ENST00000548945 TTC34A8MYJ7 566 aa13.28□□□□□ -0.28
PTCH1-218ENST00000548945 CAPN9O14815 690 aa13.28□□□□□ -0.28
PTCH1-218ENST00000548945 MED7O43513 233 aa13.28□□□□□ -0.28
PTCH1-218ENST00000548945 LATO43561 262 aa13.28□□□□□ -0.28
PTCH1-218ENST00000548945 GNA14O95837 355 aa13.28□□□□□ -0.28
PTCH1-218ENST00000548945 SLC2A3P11169 496 aa13.28□□□□□ -0.28
PTCH1-218ENST00000548945 TACR2P21452 398 aa13.28□□□□□ -0.28
PTCH1-218ENST00000548945 NUDT1P36639 197 aa13.28□□□□□ -0.28
PTCH1-218ENST00000548945 NNMTP40261 264 aa13.28□□□□□ -0.28
PTCH1-218ENST00000548945 CTSOP43234 321 aaPredicted RBP13.28□□□□□ -0.28
PTCH1-218ENST00000548945 OXCT1P55809 520 aa13.28□□□□□ -0.28
PTCH1-218ENST00000548945 MARSP56192 900 aaKnown RBP13.28□□□□□ -0.28
PTCH1-218ENST00000548945 KCNH2Q12809 1159 aa13.28□□□□□ -0.28
PTCH1-218ENST00000548945 EIF4EBP2Q13542 120 aaPredicted RBP13.28□□□□□ -0.28
PTCH1-218ENST00000548945 KCNJ12Q14500 433 aa13.28□□□□□ -0.28
PTCH1-218ENST00000548945 SLC45A4Q5BKX6 768 aa13.28□□□□□ -0.28
PTCH1-218ENST00000548945 TTC39BQ5VTQ0 682 aaPredicted RBP13.28□□□□□ -0.28
PTCH1-218ENST00000548945 SYPL2Q5VXT5 272 aa13.28□□□□□ -0.28
PTCH1-218ENST00000548945 MMS22LQ6ZRQ5 1243 aa13.28□□□□□ -0.28
PTCH1-218ENST00000548945 TMEM110Q86TL2 294 aa13.28□□□□□ -0.28
PTCH1-218ENST00000548945 ARHGEF19Q8IW93 802 aa13.28□□□□□ -0.28
PTCH1-218ENST00000548945 TRIM59Q8IWR1 403 aa13.28□□□□□ -0.28
PTCH1-218ENST00000548945 LGI2Q8N0V4 545 aa13.28□□□□□ -0.28
PTCH1-218ENST00000548945 CFAP52Q8N1V2 620 aa13.28□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms