RNA–Protein interactions for RNA: ENST00000543995.5

TNFRSF1A-216, Transcript of TNF receptor superfamily member 1A, humanhuman

TSL 5

Gene TNFRSF1A, Length 1,531 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF1A-216ENST00000543995 RFX8Q6ZV50 586 aa14.9□□□□□ -0.02
TNFRSF1A-216ENST00000543995 SUGP1Q8IWZ8 645 aaKnown RBP14.9□□□□□ -0.02
TNFRSF1A-216ENST00000543995 REXO1L1PQ8IX06 675 aa14.9□□□□□ -0.02
TNFRSF1A-216ENST00000543995 FLCNQ8NFG4 579 aa14.9□□□□□ -0.02
TNFRSF1A-216ENST00000543995 FIBINQ8TAL6 211 aa14.9□□□□□ -0.02
TNFRSF1A-216ENST00000543995 WFDC5Q8TCV5 224 aa14.9□□□□□ -0.02
TNFRSF1A-216ENST00000543995 TRIM44Q96DX7 344 aaPredicted RBP14.9□□□□□ -0.02
TNFRSF1A-216ENST00000543995 CALN1Q9BXU9 219 aa14.9□□□□□ -0.02
TNFRSF1A-216ENST00000543995 PCDH18Q9HCL0 1135 aa14.9□□□□□ -0.02
TNFRSF1A-216ENST00000543995 FBRSL1Q9HCM7 1045 aaKnown RBP14.9□□□□□ -0.02
TNFRSF1A-216ENST00000543995 ABCB8Q9NUT2 735 aa14.9□□□□□ -0.02
TNFRSF1A-216ENST00000543995 CWC15Q9P013 229 aaKnown RBP14.9□□□□□ -0.02
TNFRSF1A-216ENST00000543995 KIAA1522Q9P206 1035 aaPredicted RBP14.9□□□□□ -0.02
TNFRSF1A-216ENST00000543995 DNAI1Q9UI46 699 aa14.9□□□□□ -0.02
TNFRSF1A-216ENST00000543995 FBXO10Q9UK96 956 aa14.9□□□□□ -0.02
TNFRSF1A-216ENST00000543995 LRRD1A4D1F6 860 aa14.89□□□□□ -0.03
TNFRSF1A-216ENST00000543995 TMEM221A6NGB7 291 aa14.89□□□□□ -0.03
TNFRSF1A-216ENST00000543995 SHISA7A6NL88 538 aa14.89□□□□□ -0.03
TNFRSF1A-216ENST00000543995 M0R296 226 aa14.89□□□□□ -0.03
TNFRSF1A-216ENST00000543995 FGF10O15520 208 aaPredicted RBP14.89□□□□□ -0.03
TNFRSF1A-216ENST00000543995 FTCDO95954 541 aa14.89□□□□□ -0.03
TNFRSF1A-216ENST00000543995 RHOCP08134 193 aa14.89□□□□□ -0.03
TNFRSF1A-216ENST00000543995 CISD3P0C7P0 127 aa14.89□□□□□ -0.03
TNFRSF1A-216ENST00000543995 PABPC1P11940 636 aaKnown RBP14.89□□□□□ -0.03
TNFRSF1A-216ENST00000543995 TARSP26639 723 aaKnown RBP14.89□□□□□ -0.03
TNFRSF1A-216ENST00000543995 HLA-FP30511 346 aa14.89□□□□□ -0.03
TNFRSF1A-216ENST00000543995 HOXC13P31276 330 aa14.89□□□□□ -0.03
TNFRSF1A-216ENST00000543995 GRIA2P42262 883 aa14.89□□□□□ -0.03
TNFRSF1A-216ENST00000543995 MESP2Q0VG99 397 aa14.89□□□□□ -0.03
TNFRSF1A-216ENST00000543995 LMAN2Q12907 356 aa14.89□□□□□ -0.03
TNFRSF1A-216ENST00000543995 FSCBQ5H9T9 825 aa14.89□□□□□ -0.03
TNFRSF1A-216ENST00000543995 ARTNQ5T4W7 220 aa14.89□□□□□ -0.03
TNFRSF1A-216ENST00000543995 C6orf118Q5T5N4 469 aa14.89□□□□□ -0.03
TNFRSF1A-216ENST00000543995 RNF43Q68DV7 783 aa14.89□□□□□ -0.03
TNFRSF1A-216ENST00000543995 ASTLQ6HA08 431 aaPredicted RBP14.89□□□□□ -0.03
TNFRSF1A-216ENST00000543995 ANKS1BQ7Z6G8 1248 aa14.89□□□□□ -0.03
TNFRSF1A-216ENST00000543995 NT5DC3Q86UY8 548 aa14.89□□□□□ -0.03
TNFRSF1A-216ENST00000543995 TERB1Q8NA31 727 aa14.89□□□□□ -0.03
TNFRSF1A-216ENST00000543995 NELL2Q99435 816 aa14.89□□□□□ -0.03
TNFRSF1A-216ENST00000543995 FOXQ1Q9C009 403 aa14.89□□□□□ -0.03
TNFRSF1A-216ENST00000543995 LTB4R2Q9NPC1 389 aa14.89□□□□□ -0.03
TNFRSF1A-216ENST00000543995 TMEM248Q9NWD8 314 aa14.89□□□□□ -0.03
TNFRSF1A-216ENST00000543995 GGA2Q9UJY4 613 aa14.89□□□□□ -0.03
TNFRSF1A-216ENST00000543995 NEU3Q9UQ49 428 aa14.89□□□□□ -0.03
TNFRSF1A-216ENST00000543995 CCDC66A2RUB6 948 aa14.88□□□□□ -0.03
TNFRSF1A-216ENST00000543995 GOLGA6L9A6NEM1 432 aa14.88□□□□□ -0.03
TNFRSF1A-216ENST00000543995 FAM170BA6NMN3 283 aa14.88□□□□□ -0.03
TNFRSF1A-216ENST00000543995 EGFP01133 1207 aa14.88□□□□□ -0.03
TNFRSF1A-216ENST00000543995 CD48P09326 243 aa14.88□□□□□ -0.03
TNFRSF1A-216ENST00000543995 KDELR1P24390 212 aa14.88□□□□□ -0.03
TNFRSF1A-216ENST00000543995 CD70P32970 193 aa14.88□□□□□ -0.03
TNFRSF1A-216ENST00000543995 HCAR3P49019 387 aa14.88□□□□□ -0.03
TNFRSF1A-216ENST00000543995 OXCT1P55809 520 aa14.88□□□□□ -0.03
TNFRSF1A-216ENST00000543995 MMRN1Q13201 1228 aa14.88□□□□□ -0.03
TNFRSF1A-216ENST00000543995 DPYSL3Q14195 570 aa14.88□□□□□ -0.03
TNFRSF1A-216ENST00000543995 FSTL4Q6MZW2 842 aa14.88□□□□□ -0.03
TNFRSF1A-216ENST00000543995 CXorf57Q6NSI4 855 aaKnown RBP14.88□□□□□ -0.03
TNFRSF1A-216ENST00000543995 SETD3Q86TU7 594 aaPredicted RBP14.88□□□□□ -0.03
TNFRSF1A-216ENST00000543995 NLRP14Q86W24 1093 aa14.88□□□□□ -0.03
TNFRSF1A-216ENST00000543995 AHI1Q8N157 1196 aa14.88□□□□□ -0.03
TNFRSF1A-216ENST00000543995 PHTF2Q8N3S3 785 aa14.88□□□□□ -0.03
TNFRSF1A-216ENST00000543995 UBL4BQ8N7F7 174 aa14.88□□□□□ -0.03
TNFRSF1A-216ENST00000543995 RTL3Q8N8U3 475 aaKnown RBP14.88□□□□□ -0.03
TNFRSF1A-216ENST00000543995 TRIM58Q8NG06 486 aa14.88□□□□□ -0.03
TNFRSF1A-216ENST00000543995 RAPGEF5Q92565 580 aa14.88□□□□□ -0.03
TNFRSF1A-216ENST00000543995 RNF25Q96BH1 459 aaPredicted RBP14.88□□□□□ -0.03
TNFRSF1A-216ENST00000543995 CSPG4P5Q96PW8 444 aa14.88□□□□□ -0.03
TNFRSF1A-216ENST00000543995 MUC3BQ9H195 1237 aa14.88□□□□□ -0.03
TNFRSF1A-216ENST00000543995 RETREG1Q9H6L5 497 aa14.88□□□□□ -0.03
TNFRSF1A-216ENST00000543995 DONSONQ9NYP3 566 aa14.88□□□□□ -0.03
TNFRSF1A-216ENST00000543995 PACSIN2Q9UNF0 486 aaPredicted RBP14.88□□□□□ -0.03
TNFRSF1A-216ENST00000543995 TBC1D30Q9Y2I9 924 aa14.88□□□□□ -0.03
TNFRSF1A-216ENST00000543995 SLC27A6Q9Y2P4 619 aa14.88□□□□□ -0.03
TNFRSF1A-216ENST00000543995 USP27XA6NNY8 438 aa14.87□□□□□ -0.03
TNFRSF1A-216ENST00000543995 NCAM2O15394 837 aa14.87□□□□□ -0.03
TNFRSF1A-216ENST00000543995 PDGFBP01127 241 aaPredicted RBP14.87□□□□□ -0.03
TNFRSF1A-216ENST00000543995 ERCC2P18074 760 aa14.87□□□□□ -0.03
TNFRSF1A-216ENST00000543995 CTNNA1P35221 906 aaKnown RBP14.87□□□□□ -0.03
TNFRSF1A-216ENST00000543995 CSKP41240 450 aa14.87□□□□□ -0.03
TNFRSF1A-216ENST00000543995 MARCKSL1P49006 195 aa14.87□□□□□ -0.03
TNFRSF1A-216ENST00000543995 MAPKAPK2P49137 400 aa14.87□□□□□ -0.03
TNFRSF1A-216ENST00000543995 NUMBP49757 651 aa14.87□□□□□ -0.03
TNFRSF1A-216ENST00000543995 ARSEP51690 589 aa14.87□□□□□ -0.03
TNFRSF1A-216ENST00000543995 GEN1Q17RS7 908 aa14.87□□□□□ -0.03
TNFRSF1A-216ENST00000543995 RNF219Q5W0B1 726 aaPredicted RBP14.87□□□□□ -0.03
TNFRSF1A-216ENST00000543995 CCDC50Q8IVM0 306 aa14.87□□□□□ -0.03
TNFRSF1A-216ENST00000543995 SFTPA1Q8IWL2 248 aa14.87□□□□□ -0.03
TNFRSF1A-216ENST00000543995 FAM71BQ8TC56 605 aa14.87□□□□□ -0.03
TNFRSF1A-216ENST00000543995 KRT35Q92764 455 aa14.87□□□□□ -0.03
TNFRSF1A-216ENST00000543995 ZNF670Q9BS34 389 aa14.87□□□□□ -0.03
TNFRSF1A-216ENST00000543995 CIPCQ9C0C6 399 aa14.87□□□□□ -0.03
TNFRSF1A-216ENST00000543995 EPHX3Q9H6B9 360 aa14.87□□□□□ -0.03
TNFRSF1A-216ENST00000543995 RCOR3Q9P2K3 495 aaPredicted RBP14.87□□□□□ -0.03
TNFRSF1A-216ENST00000543995 MTF2Q9Y483 593 aaPredicted RBP14.87□□□□□ -0.03
TNFRSF1A-216ENST00000543995 PCDHA3Q9Y5H8 950 aa14.87□□□□□ -0.03
TNFRSF1A-216ENST00000543995 WASH4PA8MWX3 477 aa14.87□□□□□ -0.03
TNFRSF1A-216ENST00000543995 MIF4GDA9UHW6 222 aaKnown RBP14.87□□□□□ -0.03
TNFRSF1A-216ENST00000543995 PRRT4C9JH25 899 aa14.87□□□□□ -0.03
TNFRSF1A-216ENST00000543995 KIF5CO60282 957 aa14.87□□□□□ -0.03
TNFRSF1A-216ENST00000543995 ZRANB2O95218 330 aaKnown RBP eCLIP14.87□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms